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MCL coexpression mm9:66: Difference between revisions

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|coexpression_dpi_cluster_scores_median=0,0,0,0.114765798731257,0.0332228421052852,0.0497110725538271,0,0.780735532495689,0.381636141962868,0.394201672885709,0.11001975387204,0.0642873521037868,0.645816551409534,0.644604087009647,0,0.055196538487147,0,0.208351108345567,0.160707698715713,0.153628809860867,0.00583314082043396,0.100371788236022,0.100783889465809,0,0,0,0,0,0,0,0,0,0,0,0.110202921672641,0.000770481329870842,0.0806875710728457,0.594361763569348,0.496366326941122,0.479671268153543,0.983582702093688,0.67572133588867,0.468648781556237,0,0,0,0,0,0,0,0,0,0.480359819535978,0.591225886078848,0.528275438967845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389045962020779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0239874142643769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235248273739134,0.204093579732844,0.213611016799815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.180325425270187,0.179661587112782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00696511790926786,0,0.0464477452123786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225286977023002,0.326256291421351,0.262261155392021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0492938041367021,0.0463814129009717,0.0417740847988257,0.031895734489288,0.041718751492076,0.0403878614760544,0.076282929407615,0.091228504856109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|coexpression_dpi_cluster_scores_median=0,0,0,0.114765798731257,0.0332228421052852,0.0497110725538271,0,0.780735532495689,0.381636141962868,0.394201672885709,0.11001975387204,0.0642873521037868,0.645816551409534,0.644604087009647,0,0.055196538487147,0,0.208351108345567,0.160707698715713,0.153628809860867,0.00583314082043396,0.100371788236022,0.100783889465809,0,0,0,0,0,0,0,0,0,0,0,0.110202921672641,0.000770481329870842,0.0806875710728457,0.594361763569348,0.496366326941122,0.479671268153543,0.983582702093688,0.67572133588867,0.468648781556237,0,0,0,0,0,0,0,0,0,0.480359819535978,0.591225886078848,0.528275438967845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389045962020779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0239874142643769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235248273739134,0.204093579732844,0.213611016799815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.180325425270187,0.179661587112782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00696511790926786,0,0.0464477452123786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225286977023002,0.326256291421351,0.262261155392021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0492938041367021,0.0463814129009717,0.0417740847988257,0.031895734489288,0.041718751492076,0.0403878614760544,0.076282929407615,0.091228504856109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=GO:0005515;protein binding;0.00969600233514886;20658,20747,16598,73469,67150,22724,11796,59069,107976,12752,12226,240832,387609,12916,109711,18626,21652!GO:0005938;cell cortex;0.0108215793183714;109711,59069!GO:0043283;biopolymer metabolic process;0.0316809120672433;20747,16598,67150,22724,15388,12752,107976,107328,12226,67235,26412,387609,12916,27389,18626!GO:0030863;cortical cytoskeleton;0.0316809120672433;109711,59069!
|gostat_on_MCL_coexpression=GO:0005515;protein binding;0.00969600233514886;20658,20747,16598,73469,67150,22724,11796,59069,107976,12752,12226,240832,387609,12916,109711,18626,21652!GO:0005938;cell cortex;0.0108215793183714;109711,59069!GO:0043283;biopolymer metabolic process;0.0316809120672433;20747,16598,67150,22724,15388,12752,107976,107328,12226,67235,26412,387609,12916,27389,18626!GO:0030863;cortical cytoskeleton;0.0316809120672433;109711,59069!
|ontology_enrichment_celltype=CL:0000988!1.02e-22!32;CL:0002032!1.02e-22!32;CL:0000037!1.02e-22!32;CL:0000566!1.02e-22!32;CL:0000837!1.02e-22!32;CL:0000838!1.13e-22!12;CL:0000084!8.85e-21!11;CL:0000827!8.85e-21!11;CL:0000542!1.09e-20!13;CL:0000051!1.09e-20!13;CL:0000791!8.31e-18!9;CL:0000789!8.31e-18!9;CL:0002420!8.31e-18!9;CL:0002419!8.31e-18!9;CL:0000790!8.31e-18!9;CL:0002031!5.20e-17!25;CL:0002242!3.11e-16!16;CL:0000624!6.78e-16!8;CL:0002320!9.00e-16!46;CL:0000134!9.00e-16!46;CL:0000738!4.24e-15!17;CL:0002087!4.24e-15!17;CL:0000219!1.42e-12!54;CL:0000034!2.43e-12!97;CL:0000893!5.90e-12!6;CL:0002489!5.90e-12!6;CL:0000898!5.90e-12!6;CL:0000809!5.90e-12!6;CL:0000810!5.90e-12!6;CL:0000895!5.90e-12!6;CL:0000808!5.90e-12!6;CL:0000894!5.90e-12!6;CL:0000806!5.90e-12!6;CL:0000807!5.90e-12!6;CL:0000805!5.90e-12!6;CL:0002425!5.90e-12!6;CL:0002436!5.90e-12!6;CL:0002427!5.90e-12!6;CL:0002428!5.90e-12!6;CL:0002429!5.90e-12!6;CL:0002433!5.90e-12!6;CL:0002431!5.90e-12!6;CL:0002432!5.90e-12!6;CL:0000723!2.61e-10!91;CL:0000048!2.61e-10!91;CL:0002371!1.58e-08!118
|ontology_enrichment_disease=DOID:0060100!2.95e-07!3;DOID:4045!2.95e-07!3
|ontology_enrichment_uberon=UBERON:0002384!9.00e-16!46;UBERON:0002370!1.94e-12!23;UBERON:0000974!1.94e-12!23;UBERON:0004807!1.94e-12!23;UBERON:0005058!1.94e-12!23;UBERON:0003351!1.94e-12!23;UBERON:0009113!1.94e-12!23;UBERON:0003295!1.94e-12!23;UBERON:0009722!1.94e-12!23;UBERON:0005562!1.94e-12!23;UBERON:0007690!1.94e-12!23;UBERON:0006562!8.77e-12!24;UBERON:0003408!8.77e-12!24;UBERON:0001557!8.77e-12!24;UBERON:0001042!8.77e-12!24;UBERON:0008814!8.77e-12!24;UBERON:0009145!8.77e-12!24;UBERON:0002193!1.06e-11!48;UBERON:0002405!1.06e-11!48;UBERON:0002390!1.54e-11!45;UBERON:0003061!1.54e-11!45;UBERON:0000490!2.76e-10!66;UBERON:0000072!4.11e-10!27;UBERON:0003929!2.21e-09!55;UBERON:0004177!3.41e-09!29;UBERON:0005057!3.41e-09!29;UBERON:0000077!2.13e-08!35;UBERON:0005911!3.88e-08!69;UBERON:0000065!1.63e-07!41;UBERON:0001004!2.99e-07!42;UBERON:0000063!4.37e-07!35;UBERON:0007811!8.34e-07!36
}}
}}

Revision as of 21:03, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:117282143..117282150,-p@chr10:117282143..117282150
-
Mm9::chr10:120911291..120911303,+p@chr10:120911291..120911303
+
Mm9::chr10:18781934..18781943,-p@chr10:18781934..18781943
-
Mm9::chr10:18781972..18781989,-p@chr10:18781972..18781989
-
Mm9::chr10:18782001..18782006,-p@chr10:18782001..18782006
-
Mm9::chr10:34004711..34004717,+p@chr10:34004711..34004717
+
Mm9::chr10:61970649..61970662,+p@chr10:61970649..61970662
+
Mm9::chr10:80086352..80086393,-p@chr10:80086352..80086393
-
Mm9::chr10:96079268..96079300,-p@chr10:96079268..96079300
-
Mm9::chr10:96084020..96084029,+p@chr10:96084020..96084029
+
Mm9::chr10:98376789..98376802,-p@chr10:98376789..98376802
-
Mm9::chr10:98724503..98724525,+p@chr10:98724503..98724525
+
Mm9::chr11:102156783..102156788,+p@chr11:102156783..102156788
+
Mm9::chr11:106648032..106648081,-p@chr11:106648032..106648081
-
Mm9::chr11:106649374..106649377,-p@chr11:106649374..106649377
-
Mm9::chr11:109333550..109333561,+p@chr11:109333550..109333561
+
Mm9::chr11:118007362..118007377,+p@chr11:118007362..118007377
+
Mm9::chr11:51398143..51398189,-p@chr11:51398143..51398189
-
Mm9::chr11:6526123..6526194,+p@chr11:6526123..6526194
+
Mm9::chr11:68908217..68908228,-p@chr11:68908217..68908228
-
Mm9::chr11:68912225..68912230,+p5@Per1
Mm9::chr11:74645296..74645306,-p@chr11:74645296..74645306
-
Mm9::chr11:74645684..74645707,-p@chr11:74645684..74645707
-
Mm9::chr11:74645721..74645737,-p@chr11:74645721..74645737
-
Mm9::chr11:82891834..82891854,+p@chr11:82891834..82891854
+
Mm9::chr11:86618773..86618777,-p@chr11:86618773..86618777
-
Mm9::chr11:96849386..96849396,+p@chr11:96849386..96849396
+
Mm9::chr12:110030851..110030864,-p@chr12:110030851..110030864
-
Mm9::chr12:81361129..81361196,-p2@Actn1
Mm9::chr12:81893979..81894023,-p@chr12:81893979..81894023
-
Mm9::chr12:85516589..85516609,-p@chr12:85516589..85516609
-
Mm9::chr12:85584362..85584377,+p@chr12:85584362..85584377
+
Mm9::chr12:92826788..92826814,-p@chr12:92826788..92826814
-
Mm9::chr12:92826918..92826933,+p@chr12:92826918..92826933
+
Mm9::chr13:114390934..114390939,-p@chr13:114390934..114390939
-
Mm9::chr13:114390947..114390958,-p@chr13:114390947..114390958
-
Mm9::chr13:14158252..14158263,+p@chr13:14158252..14158263
+
Mm9::chr13:49311029..49311045,+p@chr13:49311029..49311045
+
Mm9::chr13:49311525..49311571,+p@chr13:49311525..49311571
+
Mm9::chr13:49403283..49403306,+p@chr13:49403283..49403306
+
Mm9::chr13:5863551..5863560,-p@chr13:5863551..5863560
-
Mm9::chr13:91947385..91947398,+p@chr13:91947385..91947398
+
Mm9::chr14:122277671..122277685,-p@chr14:122277671..122277685
-
Mm9::chr14:22570597..22570606,-p8@Dusp13
Mm9::chr14:37948659..37948687,+p@chr14:37948659..37948687
+
Mm9::chr14:56179177..56179232,-p@chr14:56179177..56179232
-
Mm9::chr14:70180426..70180437,+p@chr14:70180426..70180437
+
Mm9::chr14:76245950..76245954,+p4@Tpt1
Mm9::chr15:36721001..36721006,-p13@Ywhaz
Mm9::chr15:57527217..57527240,+p6@Zhx2
Mm9::chr15:59484457..59484469,-p@chr15:59484457..59484469
-
Mm9::chr15:59484966..59484978,+p@chr15:59484966..59484978
+
Mm9::chr15:81977472..81977489,-p@chr15:81977472..81977489
-
Mm9::chr15:98398453..98398467,+p@chr15:98398453..98398467
+
Mm9::chr16:23988649..23988660,-p@chr16:23988649..23988660
-
Mm9::chr16:91647305..91647351,+p4@Son
Mm9::chr16:91647936..91647959,-p@chr16:91647936..91647959
-
Mm9::chr17:25321327..25321347,-p@chr17:25321327..25321347
-
Mm9::chr17:26698310..26698331,-p1@ENSMUST00000011196
Mm9::chr17:26708047..26708069,+p@chr17:26708047..26708069
+
Mm9::chr17:27070015..27070103,+p1@Phf1
Mm9::chr17:29629785..29629804,-p@chr17:29629785..29629804
-
Mm9::chr17:36053922..36053938,+p1@Ppp1r10
Mm9::chr17:36107001..36107013,+p@chr17:36107001..36107013
+
Mm9::chr17:5189899..5189917,+p@chr17:5189899..5189917
+
Mm9::chr17:73457181..73457216,-p@chr17:73457181..73457216
-
Mm9::chr17:8067736..8067745,-p@chr17:8067736..8067745
-
Mm9::chr17:84545440..84545456,+p@chr17:84545440..84545456
+
Mm9::chr18:3337249..3337274,-p17@Crem
Mm9::chr18:3337844..3337868,+p@chr18:3337844..3337868
+
Mm9::chr18:3338209..3338212,+p@chr18:3338209..3338212
+
Mm9::chr19:24552099..24552117,+p@chr19:24552099..24552117
+
Mm9::chr19:34267072..34267110,-p@chr19:34267072..34267110
-
Mm9::chr19:3769104..3769112,+p@chr19:3769104..3769112
+
Mm9::chr19:41923002..41923005,+p@chr19:41923002..41923005
+
Mm9::chr19:53269820..53269851,+p@chr19:53269820..53269851
+
Mm9::chr19:53465371..53465420,+p@chr19:53465371..53465420
+
Mm9::chr19:53603385..53603399,-p@chr19:53603385..53603399
-
Mm9::chr19:6342562..6342573,+p7@Map4k2
Mm9::chr19:7281173..7281203,+p@chr19:7281173..7281203
+
Mm9::chr1:127331460..127331471,+p@chr1:127331460..127331471
+
Mm9::chr1:133903747..133903752,-p@chr1:133903747..133903752
-
Mm9::chr1:154135165..154135176,-p@chr1:154135165..154135176
-
Mm9::chr1:156945862..156945876,-p@chr1:156945862..156945876
-
Mm9::chr1:157883318..157883388,+p4@Tor1aip2
Mm9::chr1:164501604..164501618,-p@chr1:164501604..164501618
-
Mm9::chr1:174306419..174306449,-p@chr1:174306419..174306449
-
Mm9::chr1:184271857..184271866,+p@chr1:184271857..184271866
+
Mm9::chr1:31006734..31006754,+p@chr1:31006734..31006754
+
Mm9::chr1:33726706..33726725,+p1@ENSMUST00000051203
Mm9::chr1:53841164..53841180,-p@chr1:53841164..53841180
-
Mm9::chr1:53841311..53841320,+p@chr1:53841311..53841320
+
Mm9::chr1:55109442..55109466,-p@chr1:55109442..55109466
-
Mm9::chr1:58479688..58479693,-p@chr1:58479688..58479693
-
Mm9::chr1:7078821..7078863,-p@chr1:7078821..7078863
-
Mm9::chr2:126500378..126500382,+p@chr2:126500378..126500382
+
Mm9::chr2:154483735..154483770,-p@chr2:154483735..154483770
-
Mm9::chr2:154483777..154483786,-p@chr2:154483777..154483786
-
Mm9::chr2:156022259..156022297,-p@chr2:156022259..156022297
-
Mm9::chr2:163900952..163900967,-p@chr2:163900952..163900967
-
Mm9::chr2:164705545..164705561,+p3@Pcif1
Mm9::chr2:167600890..167600901,-p@chr2:167600890..167600901
-
Mm9::chr2:180011557..180011577,-p@chr2:180011557..180011577
-
Mm9::chr2:181116012..181116070,+p1@Lime1
Mm9::chr2:181231683..181231713,-p@chr2:181231683..181231713
-
Mm9::chr2:22923536..22923578,-p@chr2:22923536..22923578
-
Mm9::chr2:24830828..24830840,+p@chr2:24830828..24830840
+
Mm9::chr2:24830856..24830866,+p@chr2:24830856..24830866
+
Mm9::chr2:24831637..24831660,+p4@Pnpla7
Mm9::chr2:25111185..25111205,+p2@Tmem203
Mm9::chr2:28373002..28373004,+p@chr2:28373002..28373004
+
Mm9::chr2:3430364..3430399,+p2@Cdnf
Mm9::chr2:43594536..43594549,-p@chr2:43594536..43594549
-
Mm9::chr2:58009520..58009532,-p9@Cytip
Mm9::chr2:60048486..60048510,-p@chr2:60048486..60048510
-
Mm9::chr2:72818011..72818033,+p@chr2:72818011..72818033
+
Mm9::chr2:75542186..75542197,+p@chr2:75542186..75542197
+
Mm9::chr3:106588322..106588344,+p@chr3:106588322..106588344
+
Mm9::chr3:108714746..108714774,+p@chr3:108714746..108714774
+
Mm9::chr3:120994516..120994532,-p@chr3:120994516..120994532
-
Mm9::chr3:16083833..16083844,-p@chr3:16083833..16083844
-
Mm9::chr3:65762229..65762257,+p@chr3:65762229..65762257
+
Mm9::chr3:68960718..68960760,+p@chr3:68960718..68960760
+
Mm9::chr3:89191054..89191070,-p5@Zbtb7b
Mm9::chr3:89892015..89892019,+p2@Tpm3
Mm9::chr3:90017558..90017592,-p1@Gm9846
p1@Rps27
Mm9::chr3:90070315..90070319,-p@chr3:90070315..90070319
-
Mm9::chr4:107973920..107973932,+p@chr4:107973920..107973932
+
Mm9::chr4:124804695..124804707,+p@chr4:124804695..124804707
+
Mm9::chr4:154574866..154574880,-p@chr4:154574866..154574880
-
Mm9::chr4:154998394..154998430,-p@chr4:154998394..154998430
-
Mm9::chr4:33159911..33159924,-p@chr4:33159911..33159924
-
Mm9::chr4:35173449..35173470,+p@chr4:35173449..35173470
+
Mm9::chr4:35173472..35173491,+p@chr4:35173472..35173491
+
Mm9::chr4:44180641..44180651,-p14@Rnf38
Mm9::chr4:48056387..48056413,+p@chr4:48056387..48056413
+
Mm9::chr4:59594299..59594310,-p@chr4:59594299..59594310
-
Mm9::chr4:94828204..94828213,+p@chr4:94828204..94828213
+
Mm9::chr5:141072537..141072557,-p@chr5:141072537..141072557
-
Mm9::chr5:145962698..145962742,-p1@Zkscan14
Mm9::chr5:149211568..149211585,+p@chr5:149211568..149211585
+
Mm9::chr5:22924332..22924375,-p@chr5:22924332..22924375
-
Mm9::chr5:22924427..22924468,+p@chr5:22924427..22924468
+
Mm9::chr5:22938527..22938545,-p@chr5:22938527..22938545
-
Mm9::chr5:22938568..22938597,-p@chr5:22938568..22938597
-
Mm9::chr5:22939771..22939781,-p3@ENSMUST00000101522
Mm9::chr5:22941071..22941082,-p@chr5:22941071..22941082
-
Mm9::chr5:32000423..32000440,+p3@Bre
Mm9::chr5:65197600..65197603,+p@chr5:65197600..65197603
+
Mm9::chr5:65782624..65782644,-p2@Gm5451
p2@Rpl9
Mm9::chr5:73648195..73648207,+p@chr5:73648195..73648207
+
Mm9::chr5:86602063..86602077,+p@chr5:86602063..86602077
+
Mm9::chr6:112646329..112646343,+p3@ENSMUST00000146834
Mm9::chr6:113646694..113646700,-p@chr6:113646694..113646700
-
Mm9::chr6:122761207..122761239,+p@chr6:122761207..122761239
+
Mm9::chr6:122761522..122761539,+p@chr6:122761522..122761539
+
Mm9::chr6:136752463..136752480,+p@chr6:136752463..136752480
+
Mm9::chr6:145288611..145288628,-p@chr6:145288611..145288628
-
Mm9::chr6:145289534..145289555,+p@chr6:145289534..145289555
+
Mm9::chr6:31076737..31076742,+p@chr6:31076737..31076742
+
Mm9::chr6:38304687..38304702,+p@chr6:38304687..38304702
+
Mm9::chr6:38304706..38304719,+p@chr6:38304706..38304719
+
Mm9::chr6:38304753..38304767,+p@chr6:38304753..38304767
+
Mm9::chr6:38304768..38304780,+p@chr6:38304768..38304780
+
Mm9::chr6:38501212..38501256,-p@chr6:38501212..38501256
-
Mm9::chr6:39155493..39155505,+p@chr6:39155493..39155505
+
Mm9::chr7:109359106..109359134,+p@chr7:109359106..109359134
+
Mm9::chr7:109398734..109398769,+p@chr7:109398734..109398769
+
Mm9::chr7:133728149..133728162,-p10@Cln3
p10@LOC100047702
Mm9::chr7:16880787..16880801,-p@chr7:16880787..16880801
-
Mm9::chr7:16880808..16880835,-p@chr7:16880808..16880835
-
Mm9::chr7:26541097..26541116,-p@chr7:26541097..26541116
-
Mm9::chr7:29160789..29160811,+p@chr7:29160789..29160811
+
Mm9::chr7:29165300..29165304,-p@chr7:29165300..29165304
-
Mm9::chr7:29166033..29166040,-p@chr7:29166033..29166040
-
Mm9::chr7:29166045..29166061,-p@chr7:29166045..29166061
-
Mm9::chr7:29594249..29594270,+p7@Hnrnpl
Mm9::chr7:46773325..46773363,-p@chr7:46773325..46773363
-
Mm9::chr7:7251540..7251560,+p@chr7:7251540..7251560
+
Mm9::chr7:80682573..80682652,-p3@Chd2
Mm9::chr7:80682897..80682944,+p@chr7:80682897..80682944
+
Mm9::chr7:80682950..80682978,+p@chr7:80682950..80682978
+
Mm9::chr7:80703713..80703770,+p@chr7:80703713..80703770
+
Mm9::chr8:125566563..125566572,+p2@2810013P06Rik
Mm9::chr8:125898214..125898227,-p@chr8:125898214..125898227
-
Mm9::chr8:13105353..13105376,-p3@Pcid2
Mm9::chr8:26712542..26712562,-p@chr8:26712542..26712562
-
Mm9::chr8:35218097..35218110,-p@chr8:35218097..35218110
-
Mm9::chr8:48799843..48799865,-p@chr8:48799843..48799865
-
Mm9::chr8:72240314..72240323,-p4@Zfp869
Mm9::chr8:72240336..72240391,-p2@Zfp869
Mm9::chr8:74660628..74660650,-p@chr8:74660628..74660650
-
Mm9::chr8:74660673..74660688,-p@chr8:74660673..74660688
-
Mm9::chr8:74842952..74842970,+p1@Klf2
Mm9::chr8:74843432..74843470,+p@chr8:74843432..74843470
+
Mm9::chr8:74843482..74843506,+p@chr8:74843482..74843506
+
Mm9::chr8:86272895..86272904,+p@chr8:86272895..86272904
+
Mm9::chr8:86721303..86721315,+p@chr8:86721303..86721315
+
Mm9::chr8:86725882..86725891,-p@chr8:86725882..86725891
-
Mm9::chr8:86727567..86727570,-p@chr8:86727567..86727570
-
Mm9::chr8:87502871..87502886,+p@chr8:87502871..87502886
+
Mm9::chr9:108392852..108392878,-p@chr9:108392852..108392878
-
Mm9::chr9:117950276..117950280,+p@chr9:117950276..117950280
+
Mm9::chr9:36575597..36575616,+p2@ENSMUST00000126325
p2@uc009otz.1
Mm9::chr9:45753130..45753140,-p16@Sidt2
Mm9::chr9:45753402..45753433,+p@chr9:45753402..45753433
+
Mm9::chr9:63585614..63585634,+p@chr9:63585614..63585634
+
Mm9::chr9:77764951..77764971,-p@chr9:77764951..77764971
-
Mm9::chr9:7871936..7871947,+p@chr9:7871936..7871947
+
Mm9::chr9:7872985..7873009,-p4@Birc3
Mm9::chrX:138825261..138825274,+p@chrX:138825261..138825274
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005515protein binding0.00969600233514886
GO:0005938cell cortex0.0108215793183714
GO:0043283biopolymer metabolic process0.0316809120672433
GO:0030863cortical cytoskeleton0.0316809120672433



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen
hematopoietic cell1.02e-2232
hematopoietic oligopotent progenitor cell1.02e-2232
hematopoietic stem cell1.02e-2232
angioblastic mesenchymal cell1.02e-2232
hematopoietic multipotent progenitor cell1.02e-2232
lymphoid lineage restricted progenitor cell1.13e-2212
T cell8.85e-2111
pro-T cell8.85e-2111
lymphocyte1.09e-2013
common lymphoid progenitor1.09e-2013
mature alpha-beta T cell8.31e-189
alpha-beta T cell8.31e-189
immature T cell8.31e-189
mature T cell8.31e-189
immature alpha-beta T cell8.31e-189
hematopoietic lineage restricted progenitor cell5.20e-1725
nucleate cell3.11e-1616
CD4-positive, alpha-beta T cell6.78e-168
connective tissue cell9.00e-1646
mesenchymal cell9.00e-1646
leukocyte4.24e-1517
nongranular leukocyte4.24e-1517
motile cell1.42e-1254
stem cell2.43e-1297
thymocyte5.90e-126
double negative thymocyte5.90e-126
naive T cell5.90e-126
double-positive, alpha-beta thymocyte5.90e-126
CD4-positive, alpha-beta thymocyte5.90e-126
naive thymus-derived CD4-positive, alpha-beta T cell5.90e-126
DN4 thymocyte5.90e-126
DN1 thymic pro-T cell5.90e-126
DN2 thymocyte5.90e-126
DN3 thymocyte5.90e-126
immature single positive thymocyte5.90e-126
early T lineage precursor5.90e-126
mature CD4 single-positive thymocyte5.90e-126
resting double-positive thymocyte5.90e-126
double-positive blast5.90e-126
CD69-positive double-positive thymocyte5.90e-126
CD69-positive, CD4-positive single-positive thymocyte5.90e-126
CD4-positive, CD8-intermediate double-positive thymocyte5.90e-126
CD24-positive, CD4 single-positive thymocyte5.90e-126
somatic stem cell2.61e-1091
multi fate stem cell2.61e-1091
somatic cell1.58e-08118

Uber Anatomy
Ontology termp-valuen
connective tissue9.00e-1646
thymus1.94e-1223
neck1.94e-1223
respiratory system epithelium1.94e-1223
hemolymphoid system gland1.94e-1223
pharyngeal epithelium1.94e-1223
thymic region1.94e-1223
pharyngeal gland1.94e-1223
entire pharyngeal arch endoderm1.94e-1223
thymus primordium1.94e-1223
early pharyngeal endoderm1.94e-1223
pharynx8.77e-1224
gland of gut8.77e-1224
upper respiratory tract8.77e-1224
chordate pharynx8.77e-1224
pharyngeal arch system8.77e-1224
pharyngeal region of foregut8.77e-1224
hemolymphoid system1.06e-1148
immune system1.06e-1148
hematopoietic system1.54e-1145
blood island1.54e-1145
unilaminar epithelium2.76e-1066
segment of respiratory tract4.11e-1027
gut epithelium2.21e-0955
hemopoietic organ3.41e-0929
immune organ3.41e-0929
mixed endoderm/mesoderm-derived structure2.13e-0835
endo-epithelium3.88e-0869
respiratory tract1.63e-0741
respiratory system2.99e-0742
organ segment4.37e-0735
craniocervical region8.34e-0736

Disease
Ontology termp-valuen
musculoskeletal system cancer2.95e-073
muscle cancer2.95e-073


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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