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MCL coexpression mm9:145: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000073!3.09e-26!54;UBERON:0001049!3.02e-24!52;UBERON:0005068!3.02e-24!52;UBERON:0006241!3.02e-24!52;UBERON:0007135!3.02e-24!52;UBERON:0002346!2.22e-22!64;UBERON:0003075!2.22e-22!64;UBERON:0007284!2.22e-22!64;UBERON:0002020!7.77e-22!34;UBERON:0000955!4.65e-20!47;UBERON:0006238!4.65e-20!47;UBERON:0001017!1.90e-19!73;UBERON:0002616!2.36e-19!46;UBERON:0001016!1.95e-18!75;UBERON:0003056!5.31e-18!49;UBERON:0003080!6.53e-18!40;UBERON:0003528!9.03e-18!29;UBERON:0002791!9.03e-18!29;UBERON:0001893!9.03e-18!29;UBERON:0010371!2.19e-17!73;UBERON:0002780!4.53e-17!39;UBERON:0001890!4.53e-17!39;UBERON:0006240!4.53e-17!39;UBERON:0010314!1.55e-15!92;UBERON:0004121!7.23e-15!95;UBERON:0000924!7.23e-15!95;UBERON:0006601!7.23e-15!95;UBERON:0000956!1.94e-11!21;UBERON:0001869!1.94e-11!21;UBERON:0000203!1.94e-11!21;UBERON:0002021!6.07e-11!10;UBERON:0000411!6.07e-11!10;UBERON:0001950!6.07e-11!10;UBERON:0000025!3.27e-10!114;UBERON:0002619!9.71e-10!17;UBERON:0004111!2.09e-08!122;UBERON:0002420!9.12e-08!8;UBERON:0007245!9.12e-08!8;UBERON:0010009!9.12e-08!8;UBERON:0010011!9.12e-08!8;UBERON:0000454!9.12e-08!8;UBERON:0003076!6.10e-07!12;UBERON:0003057!6.10e-07!12
|ontology_enrichment_uberon=UBERON:0000073!3.09e-26!54;UBERON:0001049!3.02e-24!52;UBERON:0005068!3.02e-24!52;UBERON:0006241!3.02e-24!52;UBERON:0007135!3.02e-24!52;UBERON:0002346!2.22e-22!64;UBERON:0003075!2.22e-22!64;UBERON:0007284!2.22e-22!64;UBERON:0002020!7.77e-22!34;UBERON:0000955!4.65e-20!47;UBERON:0006238!4.65e-20!47;UBERON:0001017!1.90e-19!73;UBERON:0002616!2.36e-19!46;UBERON:0001016!1.95e-18!75;UBERON:0003056!5.31e-18!49;UBERON:0003080!6.53e-18!40;UBERON:0003528!9.03e-18!29;UBERON:0002791!9.03e-18!29;UBERON:0001893!9.03e-18!29;UBERON:0010371!2.19e-17!73;UBERON:0002780!4.53e-17!39;UBERON:0001890!4.53e-17!39;UBERON:0006240!4.53e-17!39;UBERON:0010314!1.55e-15!92;UBERON:0004121!7.23e-15!95;UBERON:0000924!7.23e-15!95;UBERON:0006601!7.23e-15!95;UBERON:0000956!1.94e-11!21;UBERON:0001869!1.94e-11!21;UBERON:0000203!1.94e-11!21;UBERON:0002021!6.07e-11!10;UBERON:0000411!6.07e-11!10;UBERON:0001950!6.07e-11!10;UBERON:0000025!3.27e-10!114;UBERON:0002619!9.71e-10!17;UBERON:0004111!2.09e-08!122;UBERON:0002420!9.12e-08!8;UBERON:0007245!9.12e-08!8;UBERON:0010009!9.12e-08!8;UBERON:0010011!9.12e-08!8;UBERON:0000454!9.12e-08!8;UBERON:0003076!6.10e-07!12;UBERON:0003057!6.10e-07!12
|tfbs_overrepresentation_for_novel_motifs=0.0171017,3.28562e-05,0.0120747,0.33458,1.01744,0.581576,0.0157521,1.07396,0.0472879,0.000433729,0.0508948,0.868518,0.123402,0.0176077,0.682851,0,0.0669724,2.81067,0.0535606,0.0779065,0.243085,0.002701,0.0792935,2.17697,0.013402,0.453895,0.393756,0.0401606,0.0162654,0.0842771,0.0349811,0.713885,2.06696,0.00195224,0.0002802,0.00286358,0.000108882,0.0135833,4.22353,0.114226,0.276238,0.0368275,0.0881477,1.74883,4.65543e-06,0.0760394,0.0418043,0.0465099,1.43177,0.0170483,0.0608725,0.115299,0.0228162,0.183641,0.194092,0.0840632,1.18695,0.0124152,0.109115,0.0184223,0.671762,0.0296263,0.0595405,0.0571113,0.0909234,0.0712657,0.774573,0.560216,0.66206,0.437083,0.00917551,2.19172,4.77531e-08,1.15636,2.07732e-05,0.0014944,0.138914,0.152138,1.06242,0.143433,1.38324,0.0733631,0.849267,0.491618,0.451029,9.41232e-12,0.678784,0.19403,0.377435,0.703643,0.888273,0.14997,0.741247,1.32566,5.06364e-05,0.757155,0.117702,0.370979,0.0418739,0.849887,0.0789183,0.108488,0.173448,0.220151,0.2191,0.00687733,0.0828978,0.00875609,0.0290628,0.0010013,0.0514436,0.174479,0.403494,1.44766,0.339344,0.753557,1.24946e-05,0.087326,0.0674403,0.221288,0.218281,0.420342,9.29877,0.151385,0.380615,0.311679,0.637399,0.111428,0.282532,0.0256519,0.491987,0.0788667,0.72526,1.44285,0.355631,2.15487,1.1956,0.401338,0.318925,1.04798,0.674956,0.286919,0.485112,0.113522,0.0585397,0.39896,0.0426605,1.01005,0.651583,0.00745781,0.0300726,4.41406e-10,0.184571,0.00191388,0.437023,0.235652,0.279141,0.0351637,0.397783,0.139145,1.56644,0.146829,1.5876,0.0151667,0.798202,0.6881,0.228336,1.59736,8.05454e-09
}}
}}

Revision as of 17:52, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:20679401..20679449,+p3@Ahi1
Mm9::chr10:20679500..20679516,+p4@Ahi1
Mm9::chr10:4518506..4518520,+p@chr10:4518506..4518520
+
Mm9::chr11:29606788..29606818,+p@chr11:29606788..29606818
+
Mm9::chr11:46009553..46009569,-p@chr11:46009553..46009569
-
Mm9::chr12:110797474..110797501,+p@chr12:110797474..110797501
+
Mm9::chr12:110797581..110797592,+p@chr12:110797581..110797592
+
Mm9::chr12:110797743..110797758,+p@chr12:110797743..110797758
+
Mm9::chr12:110797815..110797839,+p@chr12:110797815..110797839
+
Mm9::chr12:110797998..110798011,+p@chr12:110797998..110798011
+
Mm9::chr12:110798076..110798100,+p@chr12:110798076..110798100
+
Mm9::chr12:110798131..110798147,+p@chr12:110798131..110798147
+
Mm9::chr12:110798797..110798817,+p@chr12:110798797..110798817
+
Mm9::chr12:110798843..110798863,+p@chr12:110798843..110798863
+
Mm9::chr12:110798961..110798974,+p@chr12:110798961..110798974
+
Mm9::chr12:110799232..110799264,+p@chr12:110799232..110799264
+
Mm9::chr12:110804528..110804542,+p@chr12:110804528..110804542
+
Mm9::chr13:89367072..89367078,+p@chr13:89367072..89367078
+
Mm9::chr14:60262375..60262378,-p@chr14:60262375..60262378
-
Mm9::chr14:94030548..94030563,-p@chr14:94030548..94030563
-
Mm9::chr16:94632430..94632468,+p@chr16:94632430..94632468
+
Mm9::chr16:94641908..94641927,+p@chr16:94641908..94641927
+
Mm9::chr17:90435182..90435203,-p@chr17:90435182..90435203
-
Mm9::chr18:34476135..34476174,+p@chr18:34476135..34476174
+
Mm9::chr1:161861211..161861223,+p@chr1:161861211..161861223
+
Mm9::chr1:66459526..66459545,+p@chr1:66459526..66459545
+
Mm9::chr1:94972803..94972815,-p@chr1:94972803..94972815
-
Mm9::chr2:102240542..102240553,-p6@Trim44
Mm9::chr2:104516801..104516810,-p@chr2:104516801..104516810
-
Mm9::chr2:119430487..119430509,+p@chr2:119430487..119430509
+
Mm9::chr3:107467992..107468037,-p@chr3:107467992..107468037
-
Mm9::chr4:150436922..150436948,-p@chr4:150436922..150436948
-
Mm9::chr4:46690502..46690514,-p@chr4:46690502..46690514
-
Mm9::chr5:71351703..71351705,-p1@uc008xqu.1
Mm9::chr5:71351741..71351785,-p2@uc008xqu.1
Mm9::chr6:30701694..30701705,+p@chr6:30701694..30701705
+
Mm9::chr6:30701907..30701918,+p@chr6:30701907..30701918
+
Mm9::chr6:30702466..30702486,+p@chr6:30702466..30702486
+
Mm9::chr6:30753209..30753228,+p@chr6:30753209..30753228
+
Mm9::chr6:30753354..30753370,+p@chr6:30753354..30753370
+
Mm9::chr6:30753374..30753390,+p@chr6:30753374..30753390
+
Mm9::chr6:30753821..30753836,+p@chr6:30753821..30753836
+
Mm9::chr6:30753917..30753929,+p@chr6:30753917..30753929
+
Mm9::chr6:30754185..30754209,+p@chr6:30754185..30754209
+
Mm9::chr6:30754298..30754311,+p6@uc009bfw.1
Mm9::chr6:30754795..30754817,+p2@uc009bfw.1
Mm9::chr6:30754834..30754841,+p11@uc009bfw.1
Mm9::chr6:30754878..30754887,+p9@uc009bfw.1
Mm9::chr6:30754881..30754893,-p@chr6:30754881..30754893
-
Mm9::chr6:30754900..30754914,+p7@uc009bfw.1
Mm9::chr6:30754949..30754965,+p5@uc009bfw.1
Mm9::chr6:30754970..30754980,+p8@uc009bfw.1
Mm9::chr6:30754983..30755006,+p1@uc009bfw.1
Mm9::chr6:30755031..30755044,+p3@uc009bfw.1
Mm9::chr6:30755066..30755080,+p4@uc009bfw.1
Mm9::chr6:30755165..30755176,+p14@uc009bfw.1
Mm9::chr6:30755186..30755195,+p13@uc009bfw.1
Mm9::chr6:30755202..30755212,+p10@uc009bfw.1
Mm9::chr6:30755457..30755467,+p@chr6:30755457..30755467
+
Mm9::chr6:30755535..30755546,+p@chr6:30755535..30755546
+
Mm9::chr6:30755610..30755624,+p@chr6:30755610..30755624
+
Mm9::chr6:30755657..30755666,+p@chr6:30755657..30755666
+
Mm9::chr6:30755739..30755758,+p@chr6:30755739..30755758
+
Mm9::chr6:30756217..30756237,+p@chr6:30756217..30756237
+
Mm9::chr6:30756310..30756328,+p@chr6:30756310..30756328
+
Mm9::chr6:30756395..30756409,+p@chr6:30756395..30756409
+
Mm9::chr6:30756493..30756516,+p@chr6:30756493..30756516
+
Mm9::chr6:30756543..30756583,+p@chr6:30756543..30756583
+
Mm9::chr6:30756791..30756804,-p@chr6:30756791..30756804
-
Mm9::chr6:42619857..42619871,-p@chr6:42619857..42619871
-
Mm9::chr7:107425158..107425160,+p@chr7:107425158..107425160
+
Mm9::chr7:148613267..148613289,-p@chr7:148613267..148613289
-
Mm9::chr7:66497946..66497972,-p@chr7:66497946..66497972
-
Mm9::chr7:67123756..67123760,-p1@ENSMUST00000104003
Mm9::chr9:75415128..75415161,-p@chr9:75415128..75415161
-
Mm9::chrX:102503327..102503344,-p@chrX:102503327..102503344
-
Mm9::chrX:56316066..56316079,-p@chrX:56316066..56316079
-
Mm9::chrX:58439053..58439064,+p@chrX:58439053..58439064
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)1.20e-1323
neuroblast (sensu Vertebrata)1.20e-1323
neuron2.86e-0733
neuronal stem cell2.86e-0733
neuroblast2.86e-0733
electrically signaling cell2.86e-0733

Uber Anatomy
Ontology termp-valuen
regional part of nervous system3.09e-2654
neural tube3.02e-2452
neural rod3.02e-2452
future spinal cord3.02e-2452
neural keel3.02e-2452
neurectoderm2.22e-2264
neural plate2.22e-2264
presumptive neural plate2.22e-2264
gray matter7.77e-2234
brain4.65e-2047
future brain4.65e-2047
central nervous system1.90e-1973
regional part of brain2.36e-1946
nervous system1.95e-1875
pre-chordal neural plate5.31e-1849
anterior neural tube6.53e-1840
brain grey matter9.03e-1829
regional part of telencephalon9.03e-1829
telencephalon9.03e-1829
ecto-epithelium2.19e-1773
regional part of forebrain4.53e-1739
forebrain4.53e-1739
future forebrain4.53e-1739
structure with developmental contribution from neural crest1.55e-1592
ectoderm-derived structure7.23e-1595
ectoderm7.23e-1595
presumptive ectoderm7.23e-1595
cerebral cortex1.94e-1121
cerebral hemisphere1.94e-1121
pallium1.94e-1121
occipital lobe6.07e-1110
visual cortex6.07e-1110
neocortex6.07e-1110
tube3.27e-10114
regional part of cerebral cortex9.71e-1017
anatomical conduit2.09e-08122
basal ganglion9.12e-088
nuclear complex of neuraxis9.12e-088
aggregate regional part of brain9.12e-088
collection of basal ganglia9.12e-088
cerebral subcortex9.12e-088
posterior neural tube6.10e-0712
chordal neural plate6.10e-0712


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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