FFCP PHASE1:Mm9::chr10:74499822..74499845,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=76877|HGNC=|MCL_coexpression_id=1|UniProt=Q8CAM5,Q9D372|association_with_transcript=0bp_to_ENSMUST00000020391,NM_029781,uc007fpw.1,uc007fpx.1,uc007fpy.1_5end|description=CAGE_peak_3_at_Rab36_5end|id=chr10:74499822..74499845,+|ontology_enrichment_celltype=CL:0000117!3.33e-09!23;CL:0000337!3.33e-09!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.20e-11,23;CL:0000337,1.20e-11,23;CL:0000221,4.55e-09,44;CL:0000133,4.55e-09,44;CL:0002319,1.51e-08,43;CL:0000540,3.02e-07,33;CL:0000047,3.02e-07,33;CL:0000031,3.02e-07,33;CL:0000404,3.02e-07,33;CL:0000393,8.16e-07,39;CL:0000211,8.16e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.57e-24!52;UBERON:0005068!1.57e-24!52;UBERON:0006241!1.57e-24!52;UBERON:0007135!1.57e-24!52;UBERON:0000033!1.69e-24!63;UBERON:0000955!4.99e-24!50;UBERON:0006238!4.99e-24!50;UBERON:0002616!2.33e-23!49;UBERON:0001017!6.12e-22!73;UBERON:0005743!6.12e-22!73;UBERON:0000073!4.18e-21!75;UBERON:0001016!4.18e-21!75;UBERON:0004121!1.51e-20!102;UBERON:0000924!1.51e-20!102;UBERON:0006601!1.51e-20!102;UBERON:0002346!1.91e-20!71;UBERON:0003075!1.91e-20!71;UBERON:0007284!1.91e-20!71;UBERON:0003056!2.99e-19!49;UBERON:0003080!1.10e-18!40;UBERON:0002780!5.30e-18!39;UBERON:0001890!5.30e-18!39;UBERON:0006240!5.30e-18!39;UBERON:0002020!3.05e-17!34;UBERON:0002791!4.14e-15!29;UBERON:0003528!4.14e-15!29;UBERON:0001893!4.14e-15!29;UBERON:0000956!3.30e-11!21;UBERON:0001869!3.30e-11!21;UBERON:0000203!3.30e-11!21;UBERON:0007811!9.87e-11!86;UBERON:0002619!2.88e-10!17;UBERON:0000153!3.08e-10!94;UBERON:0004111!1.03e-08!122;UBERON:0000025!2.89e-08!114;UBERON:0002021!5.08e-08!10;UBERON:0000411!5.08e-08!10;UBERON:0001950!5.08e-08!10;UBERON:0000475!1.96e-07!200|ontology_enrichment_uberon_v019_2=UBERON:0000073,7.83e-35,54;UBERON:0001049,5.15e-33,52;UBERON:0005068,5.15e-33,52;UBERON:0006241,5.15e-33,52;UBERON:0007135,5.15e-33,52;UBERON:0001017,1.00e-32,73;UBERON:0001016,2.80e-31,75;UBERON:0000955,1.59e-29,47;UBERON:0006238,1.59e-29,47;UBERON:0002346,1.17e-28,64;UBERON:0003075,1.17e-28,64;UBERON:0007284,1.17e-28,64;UBERON:0002616,1.51e-28,46;UBERON:0010371,7.06e-27,73;UBERON:0004121,8.02e-27,95;UBERON:0000924,8.02e-27,95;UBERON:0006601,8.02e-27,95;UBERON:0003080,3.27e-25,40;UBERON:0002780,3.46e-24,39;UBERON:0001890,3.46e-24,39;UBERON:0006240,3.46e-24,39;UBERON:0002020,1.33e-23,34;UBERON:0003056,3.61e-23,49;UBERON:0003528,2.42e-20,29;UBERON:0002791,2.42e-20,29;UBERON:0001893,2.42e-20,29;UBERON:0010314,6.89e-18,92;UBERON:0004111,1.72e-15,122;UBERON:0000025,1.39e-14,114;UBERON:0000956,1.98e-14,21;UBERON:0001869,1.98e-14,21;UBERON:0000203,1.98e-14,21;UBERON:0002619,6.41e-14,17;UBERON:0002021,2.01e-11,10;UBERON:0000411,2.01e-11,10;UBERON:0001950,2.01e-11,10;UBERON:0003076,4.75e-08,12;UBERON:0003057,4.75e-08,12;UBERON:0002420,4.26e-07,8;UBERON:0007245,4.26e-07,8;UBERON:0010009,4.26e-07,8;UBERON:0010011,4.26e-07,8;UBERON:0000454,4.26e-07,8|phase1_expression=4.96461426024861,0,0,0,0,0.16787927191189,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0.274228867211478,0,1.78590909317247,1.58865521921416,1.82839852397255,0.319984845586813,0,0,0,0,0,0.252030129759931,0.221730510655305,0,0,0,0,0,0,0.418531630736908,0,0,0,0,0.971020706062307,2.26614272356039,2.63580021170738,0.917733760808408,2.34717403304412,0.872100625521786,1.97717564461025,1.94429899074283,1.39986421625363,1.43752564364972,0,0,0,0.257259436035947,0,0,1.82084814773638,1.05798195854407,1.26766280701236,1.0165335962074,1.77858959222228,0,0,0,0.299600110518405,2.30530983192933,1.03689612308478,0.810035629990144,1.68259969081106,2.28520787523043,3.53389665522582,1.10241719293459,0.670918297127655,1.83843757322004,2.20231761998777,4.59674417106676,4.6081959976873,1.45074916503213,1.46380229763855,1.56274011167028,4.74611098302348,6.75315132038016,4.73674568108111,2.35702868378934,1.28134512719193,1.4911955666024,0.075726193333184,0.453429360640713,2.31891590961342,0,0,0.539703191637817,0,0,0.421333260395256,1.1930122580464,1.29893002301434,0.70667914902068,2.11265129665021,0,0,0,0.216491041011214,0,1.01104889002957,0.34255163915718,0,1.03909497345377,0,0.608930956624282,0,0.904335843315735,0.117588707135705,1.13099932196708,0,0.289198713839823,0,0.161766849947409,0.220841518460394,0.484875253135222,0,2.34224637609238,2.72280718857492,0,0.599075622529601,1.19980546198682,0.127070227073065,8.53806644607489,5.94750783664214,3.14135880282161,7.47444576826789,6.64860189058859,5.61027720310812,9.40999325792994,1.52759045775474,0.622034853050465,0.758168275301024,1.05220927943237,0.390361328888111,0.459804208866946,0.540186389416048,0.753524089178575,1.7009124787832,0.768682321709099,1.68663104207512,3.62184719034622,0.215567992932842,0.378212160335639,0.527853372491847,0.219195732427575,1.39023624612799,1.39300866608867,0.823128545631774,1.19420560091096,0,0.257347907114715,0.284163499395593,0.207125772535502,0,0,0.23674473558521,0,0.308534225774757,0.232533944750408,0.268273401399619,0.1167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| ||
|EntrezGene=76877 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q8CAM5,Q9D372 | |||
|association_with_transcript=0bp_to_ENSMUST00000020391,NM_029781,uc007fpw.1,uc007fpx.1,uc007fpy.1_5end | |||
|description=CAGE_peak_3_at_Rab36_5end | |||
|id=chr10:74499822..74499845,+ | |||
|ontology_enrichment_celltype=CL:0000117!3.33e-09!23;CL:0000337!3.33e-09!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.20e-11,23;CL:0000337,1.20e-11,23;CL:0000221,4.55e-09,44;CL:0000133,4.55e-09,44;CL:0002319,1.51e-08,43;CL:0000540,3.02e-07,33;CL:0000047,3.02e-07,33;CL:0000031,3.02e-07,33;CL:0000404,3.02e-07,33;CL:0000393,8.16e-07,39;CL:0000211,8.16e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.57e-24!52;UBERON:0005068!1.57e-24!52;UBERON:0006241!1.57e-24!52;UBERON:0007135!1.57e-24!52;UBERON:0000033!1.69e-24!63;UBERON:0000955!4.99e-24!50;UBERON:0006238!4.99e-24!50;UBERON:0002616!2.33e-23!49;UBERON:0001017!6.12e-22!73;UBERON:0005743!6.12e-22!73;UBERON:0000073!4.18e-21!75;UBERON:0001016!4.18e-21!75;UBERON:0004121!1.51e-20!102;UBERON:0000924!1.51e-20!102;UBERON:0006601!1.51e-20!102;UBERON:0002346!1.91e-20!71;UBERON:0003075!1.91e-20!71;UBERON:0007284!1.91e-20!71;UBERON:0003056!2.99e-19!49;UBERON:0003080!1.10e-18!40;UBERON:0002780!5.30e-18!39;UBERON:0001890!5.30e-18!39;UBERON:0006240!5.30e-18!39;UBERON:0002020!3.05e-17!34;UBERON:0002791!4.14e-15!29;UBERON:0003528!4.14e-15!29;UBERON:0001893!4.14e-15!29;UBERON:0000956!3.30e-11!21;UBERON:0001869!3.30e-11!21;UBERON:0000203!3.30e-11!21;UBERON:0007811!9.87e-11!86;UBERON:0002619!2.88e-10!17;UBERON:0000153!3.08e-10!94;UBERON:0004111!1.03e-08!122;UBERON:0000025!2.89e-08!114;UBERON:0002021!5.08e-08!10;UBERON:0000411!5.08e-08!10;UBERON:0001950!5.08e-08!10;UBERON:0000475!1.96e-07!200 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,7.83e-35,54;UBERON:0001049,5.15e-33,52;UBERON:0005068,5.15e-33,52;UBERON:0006241,5.15e-33,52;UBERON:0007135,5.15e-33,52;UBERON:0001017,1.00e-32,73;UBERON:0001016,2.80e-31,75;UBERON:0000955,1.59e-29,47;UBERON:0006238,1.59e-29,47;UBERON:0002346,1.17e-28,64;UBERON:0003075,1.17e-28,64;UBERON:0007284,1.17e-28,64;UBERON:0002616,1.51e-28,46;UBERON:0010371,7.06e-27,73;UBERON:0004121,8.02e-27,95;UBERON:0000924,8.02e-27,95;UBERON:0006601,8.02e-27,95;UBERON:0003080,3.27e-25,40;UBERON:0002780,3.46e-24,39;UBERON:0001890,3.46e-24,39;UBERON:0006240,3.46e-24,39;UBERON:0002020,1.33e-23,34;UBERON:0003056,3.61e-23,49;UBERON:0003528,2.42e-20,29;UBERON:0002791,2.42e-20,29;UBERON:0001893,2.42e-20,29;UBERON:0010314,6.89e-18,92;UBERON:0004111,1.72e-15,122;UBERON:0000025,1.39e-14,114;UBERON:0000956,1.98e-14,21;UBERON:0001869,1.98e-14,21;UBERON:0000203,1.98e-14,21;UBERON:0002619,6.41e-14,17;UBERON:0002021,2.01e-11,10;UBERON:0000411,2.01e-11,10;UBERON:0001950,2.01e-11,10;UBERON:0003076,4.75e-08,12;UBERON:0003057,4.75e-08,12;UBERON:0002420,4.26e-07,8;UBERON:0007245,4.26e-07,8;UBERON:0010009,4.26e-07,8;UBERON:0010011,4.26e-07,8;UBERON:0000454,4.26e-07,8 | |||
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| |||
|short_description=p3@Rab36 | |||
}} |
Revision as of 17:20, 12 September 2013
Short description: | p3@Rab36 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Rab36_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000020391, NM_029781, uc007fpw.1, uc007fpx.1, uc007fpy.1_5end |
EntrezGene: | Rab36 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.20e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.20e-11 | 23 |
ectodermal cell | 4.55e-09 | 44 |
neurectodermal cell | 4.55e-09 | 44 |
neural cell | 1.51e-08 | 43 |
neuron | 3.02e-07 | 33 |
neuronal stem cell | 3.02e-07 | 33 |
neuroblast | 3.02e-07 | 33 |
electrically signaling cell | 3.02e-07 | 33 |
electrically responsive cell | 8.16e-07 | 39 |
electrically active cell | 8.16e-07 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.