FFCP PHASE1:Mm9::chr11:110813223..110813228,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=1020|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr11:110813223..110813228,-|id=chr11:110813223..110813228,-|ontology_enrichment_celltype=CL:0002319!1.79e-19!43;CL:0000034!6.39e-19!97;CL:0000723!1.57e-18!91;CL:0000048!1.57e-18!91;CL:0000221!1.75e-18!44;CL:0000133!1.75e-18!44;CL:0000055!1.30e-17!50;CL:0000548!8.50e-17!115;CL:0000004!8.50e-17!115;CL:0000255!8.50e-17!115;CL:0000540!2.64e-16!33;CL:0000047!2.64e-16!33;CL:0000031!2.64e-16!33;CL:0000404!2.64e-16!33;CL:0002371!1.24e-15!118;CL:0000144!1.96e-15!121;CL:0000012!1.96e-15!121;CL:0000393!2.17e-15!39;CL:0000211!2.17e-15!39;CL:0000117!2.12e-13!23;CL:0000337!2.12e-13!23;CL:0002321!3.36e-13!70;CL:0000220!3.36e-13!70;CL:0000219!2.57e-08!54|ontology_enrichment_celltype_v019_2=CL:0002319,5.53e-29,43;CL:0000221,5.70e-28,44;CL:0000133,5.70e-28,44;CL:0000723,8.63e-27,91;CL:0000048,8.63e-27,91;CL:0000034,7.09e-26,97;CL:0000540,6.05e-25,33;CL:0000047,6.05e-25,33;CL:0000031,6.05e-25,33;CL:0000404,6.05e-25,33;CL:0002321,7.41e-25,70;CL:0000393,9.59e-24,39;CL:0000211,9.59e-24,39;CL:0000117,6.21e-20,23;CL:0000337,6.21e-20,23;CL:0000219,8.53e-10,54;CL:0002320,2.59e-07,46;CL:0000134,2.59e-07,46;CL:0000107,3.21e-07,9;CL:0002453,5.57e-07,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.37e-20!73;UBERON:0005743!2.37e-20!73;UBERON:0000073!6.35e-20!75;UBERON:0001016!6.35e-20!75;UBERON:0002020!6.43e-13!34;UBERON:0001049!3.57e-11!52;UBERON:0005068!3.57e-11!52;UBERON:0006241!3.57e-11!52;UBERON:0007135!3.57e-11!52;UBERON:0004121!4.44e-11!102;UBERON:0000924!4.44e-11!102;UBERON:0006601!4.44e-11!102;UBERON:0000955!9.85e-11!50;UBERON:0006238!9.85e-11!50;UBERON:0002791!1.32e-10!29;UBERON:0003528!1.32e-10!29;UBERON:0001893!1.32e-10!29;UBERON:0002616!1.64e-10!49;UBERON:0000956!1.76e-09!21;UBERON:0001869!1.76e-09!21;UBERON:0000203!1.76e-09!21;UBERON:0002346!7.88e-09!71;UBERON:0003075!7.88e-09!71;UBERON:0007284!7.88e-09!71;UBERON:0002780!1.71e-08!39;UBERON:0001890!1.71e-08!39;UBERON:0006240!1.71e-08!39;UBERON:0002619!2.28e-08!17;UBERON:0003080!2.89e-08!40;UBERON:0000033!6.55e-08!63;UBERON:0000153!1.39e-07!94;UBERON:0002021!6.83e-07!10;UBERON:0000411!6.83e-07!10;UBERON:0001950!6.83e-07!10;UBERON:0003056!7.66e-07!49;UBERON:0007811!8.38e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.22e-25,73;UBERON:0001016,9.27e-24,75;UBERON:0002020,4.54e-19,34;UBERON:0004121,1.44e-15,95;UBERON:0000924,1.44e-15,95;UBERON:0006601,1.44e-15,95;UBERON:0003528,1.74e-15,29;UBERON:0002791,1.74e-15,29;UBERON:0001893,1.74e-15,29;UBERON:0000073,2.63e-14,54;UBERON:0000956,1.01e-12,21;UBERON:0001869,1.01e-12,21;UBERON:0000203,1.01e-12,21;UBERON:0001049,1.40e-11,52;UBERON:0005068,1.40e-11,52;UBERON:0006241,1.40e-11,52;UBERON:0007135,1.40e-11,52;UBERON:0002619,2.29e-11,17;UBERON:0002780,3.31e-10,39;UBERON:0001890,3.31e-10,39;UBERON:0006240,3.31e-10,39;UBERON:0002346,5.54e-10,64;UBERON:0003075,5.54e-10,64;UBERON:0007284,5.54e-10,64;UBERON:0002021,7.66e-10,10;UBERON:0000411,7.66e-10,10;UBERON:0001950,7.66e-10,10;UBERON:0003080,9.70e-10,40;UBERON:0000955,1.86e-09,47;UBERON:0006238,1.86e-09,47;UBERON:0002616,3.75e-09,46;UBERON:0010371,2.08e-07,73;UBERON:0002384,2.59e-07,46;UBERON:0002410,3.21e-07,9;UBERON:0011216,5.68e-07,194|phase1_expression=0.160148847104794,0,0,0,0,0,0.467225281191051,0.774739940649458,0.281577444303333,0.70219357896598,1.36974374580404,0.558405112967355,1.19840510951844,0.34968160967599,11.9919514253639,0.809901069559304,2.79824751251259,0.946386496074713,1.37114433605739,1.69755860719212,0.680346321208558,0.992909512008853,1.82839852397255,0,0,0,0.430761996159075,0.215471232685889,0.190023419456374,0,0,34.9266870402797,96.5651716507775,15.8481681015439,0.288851619751275,0.332469290716985,1.02084678131185,0,0.7813353445238,0,0,0,0,0.125896817975577,0.405507724878058,0.367093504323363,2.34717403304412,7.63088047331563,1.31811709640683,6.41618666945135,7.97922603264566,10.062679505548,0.335565212115473,0,1.34437519656986,2.82985379639542,4.01146815914259,3.09403255366465,5.86717736492834,4.7609188134483,19.6487735086916,3.72728985276045,8.89294796111139,2.6996991518442,0.988866362566974,1.4209602298922,3.59520132622086,4.61061966385865,3.7328260431052,6.34527910158946,8.2026734927039,3.42781181284564,6.18431914664518,6.36952155917761,8.4344014496048,22.9804696652505,7.70811166995721,9.70423769447427,8.90917892886212,5.01167893374737,9.5147149346506,3.64639359389732,6.14202597803038,2.8138130501584,9.16789486660861,4.71405736757868,7.11858403995515,3.54158947068071,0.530083353332288,0.529000920747499,3.18850937571846,0,2.03991400112325,3.2382191498269,7.79731700937203,6.72040330646003,0,0,0.259786004602869,0,0.14084341977668,0,0,0,1.73192832808971,1.52015919285059,3.53867111510348,0.22836775943812,0.258937883647172,0.593768556259299,0.867426633830679,0,0,0.301445281105245,0.470354828542819,0.125666591329675,0.247194967734374,0.144599356919912,0,0.323533699894818,0,0,0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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=1020 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr11:110813223..110813228,- | |||
|id=chr11:110813223..110813228,- | |||
|ontology_enrichment_celltype=CL:0002319!1.79e-19!43;CL:0000034!6.39e-19!97;CL:0000723!1.57e-18!91;CL:0000048!1.57e-18!91;CL:0000221!1.75e-18!44;CL:0000133!1.75e-18!44;CL:0000055!1.30e-17!50;CL:0000548!8.50e-17!115;CL:0000004!8.50e-17!115;CL:0000255!8.50e-17!115;CL:0000540!2.64e-16!33;CL:0000047!2.64e-16!33;CL:0000031!2.64e-16!33;CL:0000404!2.64e-16!33;CL:0002371!1.24e-15!118;CL:0000144!1.96e-15!121;CL:0000012!1.96e-15!121;CL:0000393!2.17e-15!39;CL:0000211!2.17e-15!39;CL:0000117!2.12e-13!23;CL:0000337!2.12e-13!23;CL:0002321!3.36e-13!70;CL:0000220!3.36e-13!70;CL:0000219!2.57e-08!54 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,5.53e-29,43;CL:0000221,5.70e-28,44;CL:0000133,5.70e-28,44;CL:0000723,8.63e-27,91;CL:0000048,8.63e-27,91;CL:0000034,7.09e-26,97;CL:0000540,6.05e-25,33;CL:0000047,6.05e-25,33;CL:0000031,6.05e-25,33;CL:0000404,6.05e-25,33;CL:0002321,7.41e-25,70;CL:0000393,9.59e-24,39;CL:0000211,9.59e-24,39;CL:0000117,6.21e-20,23;CL:0000337,6.21e-20,23;CL:0000219,8.53e-10,54;CL:0002320,2.59e-07,46;CL:0000134,2.59e-07,46;CL:0000107,3.21e-07,9;CL:0002453,5.57e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.37e-20!73;UBERON:0005743!2.37e-20!73;UBERON:0000073!6.35e-20!75;UBERON:0001016!6.35e-20!75;UBERON:0002020!6.43e-13!34;UBERON:0001049!3.57e-11!52;UBERON:0005068!3.57e-11!52;UBERON:0006241!3.57e-11!52;UBERON:0007135!3.57e-11!52;UBERON:0004121!4.44e-11!102;UBERON:0000924!4.44e-11!102;UBERON:0006601!4.44e-11!102;UBERON:0000955!9.85e-11!50;UBERON:0006238!9.85e-11!50;UBERON:0002791!1.32e-10!29;UBERON:0003528!1.32e-10!29;UBERON:0001893!1.32e-10!29;UBERON:0002616!1.64e-10!49;UBERON:0000956!1.76e-09!21;UBERON:0001869!1.76e-09!21;UBERON:0000203!1.76e-09!21;UBERON:0002346!7.88e-09!71;UBERON:0003075!7.88e-09!71;UBERON:0007284!7.88e-09!71;UBERON:0002780!1.71e-08!39;UBERON:0001890!1.71e-08!39;UBERON:0006240!1.71e-08!39;UBERON:0002619!2.28e-08!17;UBERON:0003080!2.89e-08!40;UBERON:0000033!6.55e-08!63;UBERON:0000153!1.39e-07!94;UBERON:0002021!6.83e-07!10;UBERON:0000411!6.83e-07!10;UBERON:0001950!6.83e-07!10;UBERON:0003056!7.66e-07!49;UBERON:0007811!8.38e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.22e-25,73;UBERON:0001016,9.27e-24,75;UBERON:0002020,4.54e-19,34;UBERON:0004121,1.44e-15,95;UBERON:0000924,1.44e-15,95;UBERON:0006601,1.44e-15,95;UBERON:0003528,1.74e-15,29;UBERON:0002791,1.74e-15,29;UBERON:0001893,1.74e-15,29;UBERON:0000073,2.63e-14,54;UBERON:0000956,1.01e-12,21;UBERON:0001869,1.01e-12,21;UBERON:0000203,1.01e-12,21;UBERON:0001049,1.40e-11,52;UBERON:0005068,1.40e-11,52;UBERON:0006241,1.40e-11,52;UBERON:0007135,1.40e-11,52;UBERON:0002619,2.29e-11,17;UBERON:0002780,3.31e-10,39;UBERON:0001890,3.31e-10,39;UBERON:0006240,3.31e-10,39;UBERON:0002346,5.54e-10,64;UBERON:0003075,5.54e-10,64;UBERON:0007284,5.54e-10,64;UBERON:0002021,7.66e-10,10;UBERON:0000411,7.66e-10,10;UBERON:0001950,7.66e-10,10;UBERON:0003080,9.70e-10,40;UBERON:0000955,1.86e-09,47;UBERON:0006238,1.86e-09,47;UBERON:0002616,3.75e-09,46;UBERON:0010371,2.08e-07,73;UBERON:0002384,2.59e-07,46;UBERON:0002410,3.21e-07,9;UBERON:0011216,5.68e-07,194 | |||
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| |||
|short_description=p@chr11:110813223..110813228,- | |||
}} |
Revision as of 18:40, 12 September 2013
Short description: | p@chr11:110813223..110813228, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:110813223..110813228, - |
Coexpression cluster: | MCL_coexpression_mm9:1020 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 5.53e-29 | 43 |
ectodermal cell | 5.70e-28 | 44 |
neurectodermal cell | 5.70e-28 | 44 |
somatic stem cell | 8.63e-27 | 91 |
multi fate stem cell | 8.63e-27 | 91 |
stem cell | 7.09e-26 | 97 |
neuron | 6.05e-25 | 33 |
neuronal stem cell | 6.05e-25 | 33 |
neuroblast | 6.05e-25 | 33 |
electrically signaling cell | 6.05e-25 | 33 |
embryonic cell | 7.41e-25 | 70 |
electrically responsive cell | 9.59e-24 | 39 |
electrically active cell | 9.59e-24 | 39 |
CNS neuron (sensu Vertebrata) | 6.21e-20 | 23 |
neuroblast (sensu Vertebrata) | 6.21e-20 | 23 |
motile cell | 8.53e-10 | 54 |
connective tissue cell | 2.59e-07 | 46 |
mesenchymal cell | 2.59e-07 | 46 |
autonomic neuron | 3.21e-07 | 9 |
oligodendrocyte precursor cell | 5.57e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 6.22e-25 | 73 |
nervous system | 9.27e-24 | 75 |
gray matter | 4.54e-19 | 34 |
ectoderm-derived structure | 1.44e-15 | 95 |
ectoderm | 1.44e-15 | 95 |
presumptive ectoderm | 1.44e-15 | 95 |
brain grey matter | 1.74e-15 | 29 |
regional part of telencephalon | 1.74e-15 | 29 |
telencephalon | 1.74e-15 | 29 |
regional part of nervous system | 2.63e-14 | 54 |
cerebral cortex | 1.01e-12 | 21 |
cerebral hemisphere | 1.01e-12 | 21 |
pallium | 1.01e-12 | 21 |
neural tube | 1.40e-11 | 52 |
neural rod | 1.40e-11 | 52 |
future spinal cord | 1.40e-11 | 52 |
neural keel | 1.40e-11 | 52 |
regional part of cerebral cortex | 2.29e-11 | 17 |
regional part of forebrain | 3.31e-10 | 39 |
forebrain | 3.31e-10 | 39 |
future forebrain | 3.31e-10 | 39 |
neurectoderm | 5.54e-10 | 64 |
neural plate | 5.54e-10 | 64 |
presumptive neural plate | 5.54e-10 | 64 |
occipital lobe | 7.66e-10 | 10 |
visual cortex | 7.66e-10 | 10 |
neocortex | 7.66e-10 | 10 |
anterior neural tube | 9.70e-10 | 40 |
brain | 1.86e-09 | 47 |
future brain | 1.86e-09 | 47 |
regional part of brain | 3.75e-09 | 46 |
ecto-epithelium | 2.08e-07 | 73 |
connective tissue | 2.59e-07 | 46 |
autonomic nervous system | 3.21e-07 | 9 |
organ system subdivision | 5.68e-07 | 194 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.