FFCP PHASE1:Mm9::chr4:124762355..124762366,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=70088|HGNC=|MCL_coexpression_id=60|UniProt=Q2VPQ9|association_with_transcript=-11bp_to_ENSMUST00000154689_5end|description=CAGE_peak_2_at_Meaf6_5end|id=chr4:124762355..124762366,+|ontology_enrichment_celltype=CL:0000117!3.69e-14!23;CL:0000337!3.69e-14!23;CL:0000540!1.22e-12!33;CL:0000047!1.22e-12!33;CL:0000031!1.22e-12!33;CL:0000404!1.22e-12!33;CL:0000221!1.96e-11!44;CL:0000133!1.96e-11!44;CL:0002319!2.12e-11!43;CL:0000393!7.92e-09!39;CL:0000211!7.92e-09!39;CL:0000055!8.87e-08!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.35e-26,23;CL:0000337,1.35e-26,23;CL:0000540,1.12e-17,33;CL:0000047,1.12e-17,33;CL:0000031,1.12e-17,33;CL:0000404,1.12e-17,33;CL:0000393,8.83e-14,39;CL:0000211,8.83e-14,39;CL:0002319,8.25e-12,43;CL:0000221,2.24e-11,44;CL:0000133,2.24e-11,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!7.77e-22!75;UBERON:0001016!7.77e-22!75;UBERON:0001017!1.66e-21!73;UBERON:0005743!1.66e-21!73;UBERON:0001049!8.85e-19!52;UBERON:0005068!8.85e-19!52;UBERON:0006241!8.85e-19!52;UBERON:0007135!8.85e-19!52;UBERON:0004121!2.95e-18!102;UBERON:0000924!2.95e-18!102;UBERON:0006601!2.95e-18!102;UBERON:0002346!6.74e-18!71;UBERON:0003075!6.74e-18!71;UBERON:0007284!6.74e-18!71;UBERON:0000033!2.63e-17!63;UBERON:0000955!3.03e-17!50;UBERON:0006238!3.03e-17!50;UBERON:0002616!3.92e-17!49;UBERON:0003056!1.55e-14!49;UBERON:0002020!8.56e-14!34;UBERON:0003080!3.88e-13!40;UBERON:0002780!1.64e-12!39;UBERON:0001890!1.64e-12!39;UBERON:0006240!1.64e-12!39;UBERON:0007811!6.85e-12!86;UBERON:0000153!8.04e-12!94;UBERON:0002791!5.07e-11!29;UBERON:0003528!5.07e-11!29;UBERON:0001893!5.07e-11!29;UBERON:0000956!9.23e-07!21;UBERON:0001869!9.23e-07!21;UBERON:0000203!9.23e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.90e-25,54;UBERON:0002020,2.52e-24,34;UBERON:0001049,3.67e-23,52;UBERON:0005068,3.67e-23,52;UBERON:0006241,3.67e-23,52;UBERON:0007135,3.67e-23,52;UBERON:0002346,7.03e-23,64;UBERON:0003075,7.03e-23,64;UBERON:0007284,7.03e-23,64;UBERON:0001017,1.70e-22,73;UBERON:0001016,1.54e-21,75;UBERON:0003528,6.84e-19,29;UBERON:0002791,6.84e-19,29;UBERON:0001893,6.84e-19,29;UBERON:0010371,1.59e-18,73;UBERON:0004121,4.04e-18,95;UBERON:0000924,4.04e-18,95;UBERON:0006601,4.04e-18,95;UBERON:0003056,2.01e-17,49;UBERON:0003080,2.15e-17,40;UBERON:0002616,3.89e-17,46;UBERON:0000955,1.42e-16,47;UBERON:0006238,1.42e-16,47;UBERON:0002780,2.75e-16,39;UBERON:0001890,2.75e-16,39;UBERON:0006240,2.75e-16,39;UBERON:0010314,3.13e-12,92;UBERON:0000956,1.18e-10,21;UBERON:0001869,1.18e-10,21;UBERON:0000203,1.18e-10,21;UBERON:0002420,2.91e-10,8;UBERON:0007245,2.91e-10,8;UBERON:0010009,2.91e-10,8;UBERON:0010011,2.91e-10,8;UBERON:0000454,2.91e-10,8;UBERON:0002619,6.05e-09,17;UBERON:0002240,4.65e-08,6;UBERON:0005174,4.65e-08,6;UBERON:0001137,4.65e-08,6;UBERON:0000369,6.30e-07,5;UBERON:0002435,6.30e-07,5;UBERON:0000204,6.30e-07,5;UBERON:0010082,6.30e-07,5;UBERON:0001948,7.07e-07,5;UBERON:0002315,7.07e-07,5|phase1_expression=0.960893082628764,0,0,0,0,0.16787927191189,0.467225281191051,0.129123323441576,0,0.234064526321993,0.171217968225505,0.0797721589953364,0.513602189793617,0.0874204024189974,0,0.607425802169478,0.699561878128147,0.157731082679119,0.137114433605739,0.42438965179803,2.89147186513637,0.893618560807968,0.522399578277871,0.47997726838022,0.22940928106717,0,0,0.430942465371778,0,0,0.443461021310609,0.635030673459631,0,0,0,0.166234645358492,0.204169356262369,0,0,0,0.588231488031014,0,0,0.125896817975577,0.101376931219515,0.183546752161682,0.782391344348039,0.65407546914134,0.219686182734472,0.388859798148567,0.55994568650145,0,0.167782606057736,0,0.672187598284928,0,0.286533439938757,0,4.24864567805155,6.34789175126439,2.53532561402472,4.06613438482959,1.77858959222228,0,0,0.7104801149461,0.299600110518405,0.768436610643109,1.76272340924412,1.62007125998029,1.68259969081106,1.42825492201902,4.41737081903227,1.34739879136449,1.82106394934649,1.83843757322004,3.30347642998166,4.08599481872601,4.30098293117482,3.56092976871523,6.03818447775904,3.12548022334056,4.18774498502071,2.25105044012672,3.51435969886663,2.06240009831567,3.70166370077668,3.54158947068071,0.681535739998656,0.604572480854284,0.289864488701678,0,0,0,0,0,0.280888840263504,0.170430322578058,0,1.06001872353102,0.563373679106722,1.28326477414318,0,0,0.216491041011214,0,0,0.91347103775248,0.517875767294343,0.148442139064825,0.693941307064543,0,0,0.150722640552623,0.823120949949934,0.251333182659351,0.494389935468748,0.144599356919912,0,0.161766849947409,0.220841518460394,0,0,0.878342391034642,0.83778682725382,0,0,0.599902730993408,0.127070227073065,4.34392854273986,1.37250180845588,2.76439574648302,0.521472960576829,1.53429274398198,3.53239675751252,2.43361894601636,0.407357455401265,0.373220911830279,0.252722758433675,0,1.17108398666433,2.29902104433473,1.44049703844279,0.753524089178575,0.884474488967262,1.15302348256365,0.749613796477831,0.517406741478031,1.94011193639558,1.51284864134255,1.05570674498369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| ||
|EntrezGene=70088 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|UniProt=Q2VPQ9 | |||
|association_with_transcript=-11bp_to_ENSMUST00000154689_5end | |||
|description=CAGE_peak_2_at_Meaf6_5end | |||
|id=chr4:124762355..124762366,+ | |||
|ontology_enrichment_celltype=CL:0000117!3.69e-14!23;CL:0000337!3.69e-14!23;CL:0000540!1.22e-12!33;CL:0000047!1.22e-12!33;CL:0000031!1.22e-12!33;CL:0000404!1.22e-12!33;CL:0000221!1.96e-11!44;CL:0000133!1.96e-11!44;CL:0002319!2.12e-11!43;CL:0000393!7.92e-09!39;CL:0000211!7.92e-09!39;CL:0000055!8.87e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.35e-26,23;CL:0000337,1.35e-26,23;CL:0000540,1.12e-17,33;CL:0000047,1.12e-17,33;CL:0000031,1.12e-17,33;CL:0000404,1.12e-17,33;CL:0000393,8.83e-14,39;CL:0000211,8.83e-14,39;CL:0002319,8.25e-12,43;CL:0000221,2.24e-11,44;CL:0000133,2.24e-11,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!7.77e-22!75;UBERON:0001016!7.77e-22!75;UBERON:0001017!1.66e-21!73;UBERON:0005743!1.66e-21!73;UBERON:0001049!8.85e-19!52;UBERON:0005068!8.85e-19!52;UBERON:0006241!8.85e-19!52;UBERON:0007135!8.85e-19!52;UBERON:0004121!2.95e-18!102;UBERON:0000924!2.95e-18!102;UBERON:0006601!2.95e-18!102;UBERON:0002346!6.74e-18!71;UBERON:0003075!6.74e-18!71;UBERON:0007284!6.74e-18!71;UBERON:0000033!2.63e-17!63;UBERON:0000955!3.03e-17!50;UBERON:0006238!3.03e-17!50;UBERON:0002616!3.92e-17!49;UBERON:0003056!1.55e-14!49;UBERON:0002020!8.56e-14!34;UBERON:0003080!3.88e-13!40;UBERON:0002780!1.64e-12!39;UBERON:0001890!1.64e-12!39;UBERON:0006240!1.64e-12!39;UBERON:0007811!6.85e-12!86;UBERON:0000153!8.04e-12!94;UBERON:0002791!5.07e-11!29;UBERON:0003528!5.07e-11!29;UBERON:0001893!5.07e-11!29;UBERON:0000956!9.23e-07!21;UBERON:0001869!9.23e-07!21;UBERON:0000203!9.23e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.90e-25,54;UBERON:0002020,2.52e-24,34;UBERON:0001049,3.67e-23,52;UBERON:0005068,3.67e-23,52;UBERON:0006241,3.67e-23,52;UBERON:0007135,3.67e-23,52;UBERON:0002346,7.03e-23,64;UBERON:0003075,7.03e-23,64;UBERON:0007284,7.03e-23,64;UBERON:0001017,1.70e-22,73;UBERON:0001016,1.54e-21,75;UBERON:0003528,6.84e-19,29;UBERON:0002791,6.84e-19,29;UBERON:0001893,6.84e-19,29;UBERON:0010371,1.59e-18,73;UBERON:0004121,4.04e-18,95;UBERON:0000924,4.04e-18,95;UBERON:0006601,4.04e-18,95;UBERON:0003056,2.01e-17,49;UBERON:0003080,2.15e-17,40;UBERON:0002616,3.89e-17,46;UBERON:0000955,1.42e-16,47;UBERON:0006238,1.42e-16,47;UBERON:0002780,2.75e-16,39;UBERON:0001890,2.75e-16,39;UBERON:0006240,2.75e-16,39;UBERON:0010314,3.13e-12,92;UBERON:0000956,1.18e-10,21;UBERON:0001869,1.18e-10,21;UBERON:0000203,1.18e-10,21;UBERON:0002420,2.91e-10,8;UBERON:0007245,2.91e-10,8;UBERON:0010009,2.91e-10,8;UBERON:0010011,2.91e-10,8;UBERON:0000454,2.91e-10,8;UBERON:0002619,6.05e-09,17;UBERON:0002240,4.65e-08,6;UBERON:0005174,4.65e-08,6;UBERON:0001137,4.65e-08,6;UBERON:0000369,6.30e-07,5;UBERON:0002435,6.30e-07,5;UBERON:0000204,6.30e-07,5;UBERON:0010082,6.30e-07,5;UBERON:0001948,7.07e-07,5;UBERON:0002315,7.07e-07,5 | |||
|phase1_expression=0.960893082628764,0,0,0,0,0.16787927191189,0.467225281191051,0.129123323441576,0,0.234064526321993,0.171217968225505,0.0797721589953364,0.513602189793617,0.0874204024189974,0,0.607425802169478,0.699561878128147,0.157731082679119,0.137114433605739,0.42438965179803,2.89147186513637,0.893618560807968,0.522399578277871,0.47997726838022,0.22940928106717,0,0,0.430942465371778,0,0,0.443461021310609,0.635030673459631,0,0,0,0.166234645358492,0.204169356262369,0,0,0,0.588231488031014,0,0,0.125896817975577,0.101376931219515,0.183546752161682,0.782391344348039,0.65407546914134,0.219686182734472,0.388859798148567,0.55994568650145,0,0.167782606057736,0,0.672187598284928,0,0.286533439938757,0,4.24864567805155,6.34789175126439,2.53532561402472,4.06613438482959,1.77858959222228,0,0,0.7104801149461,0.299600110518405,0.768436610643109,1.76272340924412,1.62007125998029,1.68259969081106,1.42825492201902,4.41737081903227,1.34739879136449,1.82106394934649,1.83843757322004,3.30347642998166,4.08599481872601,4.30098293117482,3.56092976871523,6.03818447775904,3.12548022334056,4.18774498502071,2.25105044012672,3.51435969886663,2.06240009831567,3.70166370077668,3.54158947068071,0.681535739998656,0.604572480854284,0.289864488701678,0,0,0,0,0,0.280888840263504,0.170430322578058,0,1.06001872353102,0.563373679106722,1.28326477414318,0,0,0.216491041011214,0,0,0.91347103775248,0.517875767294343,0.148442139064825,0.693941307064543,0,0,0.150722640552623,0.823120949949934,0.251333182659351,0.494389935468748,0.144599356919912,0,0.161766849947409,0.220841518460394,0,0,0.878342391034642,0.83778682725382,0,0,0.599902730993408,0.127070227073065,4.34392854273986,1.37250180845588,2.76439574648302,0.521472960576829,1.53429274398198,3.53239675751252,2.43361894601636,0.407357455401265,0.373220911830279,0.252722758433675,0,1.17108398666433,2.29902104433473,1.44049703844279,0.753524089178575,0.884474488967262,1.15302348256365,0.749613796477831,0.517406741478031,1.94011193639558,1.51284864134255,1.05570674498369,0,0.556094498451196,0,0.205782136407943,0.796137067273973,1.40442637462647,0.257347907114715,0.568326998791185,0.414251545071004,0.469052119962192,0,0.473489471170421,0.787056926989615,0,0,0.268273401399619,0.467061369468678,0.493679549740441,0,0.0810688095458557,0.146199987425332,0.439100230582101,0,1.68231958851302,1.9551876352064,0,0.528901133327089,0.639864751605702,1.16118335930219,0.128867461322093,0.201683524623343,0.444756087689741,0,0,0.164698954724011,0.251335208800269,0,0,0,0.648414149624083,0.597423819763102,0.569003702859245,0.571242563048644,1.1270773567308,0.203651327845314,0.387904974335251,0.0701358198903186,0.126473074248515,0.295220295959204,0.156998727841375,0.493588655687202,0,0.166845105716094,0.393117990226406,0.224862112384854,0.405720242777006,0,0,0.287696137450811,0,0,0,0.372140947668503,0,0,0,0.482443521363367,0.554259570499814,1.13694847062291,0.325929952884052,0.678980343100753,0.469380496577004,0.167506257441816,0,0.195133647857799,0.315270288212382,0.8858587585951,0,0,0,0,0,0,0,0,4.17431533968259,4.80567915028033,0,0,1.26203287766503,0.390438744296638,0.861693590931196,0.477937595905104,0,0.849229592366497,0.404810701674894,0.292255857911312,0.790575555893047,0.642642632843614,0.141940085208269,0.712262414669021,0.162886959353576,0,0,0.242780636154981,0,0.377210159511796,0.295301892880773,0,0.258428293168221,0,0.356497378384721,0,0,0,0.340439605753788,1.08036656418786,0.905510786479282,0.643011105094777,0.532020700926821,0.713475270408282,0.987294123612726,0.304464949114599,0.704015124191131,0,0,0.16488625294148,0.484393280087717,0.603129249281559,0.596861720015682,0.492422699235184,0.582961673259701,3.70850604021019,0.170870880797853,0,0.555583582109135,0.565105371014073,0.546776910884101,0.228778173206523,0.509935289981566,0.279902904647316,0,0,1.10717597753397,0.203319467126849,0.756037385752609,0.418176592028937,0,0.269728692769641,0.41326727862668,0.26175594198403,0.259229946583586,0,16.3470952218415,0.897099276263873,0.827292452285488,2.52786544847262,2.45403664607689,1.35164900392623,1.17357238645754,0.5208175393758,4.40409246587986,5.07326653734613,9.79302021276743,0.316011120628178,0.405450430580328,0.616265742988964,0.649604114888975,0.358053391334963,0.596044064343795,0.600977247599844,0,0.100966449948148,0.15241361331,0.504130925684203,0.38983152295901,0.192423683280659,0.467507608726276,0,0.221985953374065,1.07656627931371,0.503653849092235,0.19318959403219,0,0.549454872801795,0,0,3.95326289831947,2.30162618253588,2.29158205375759,1.3748254587495,1.37016503954128,1.5107877947794,2.02506750069542,0.900642406448441,0,1.03552062350364,1.24544817101012,1.19707462020309,0.853668028770671,0.486213434136588,1.25767897576789,0.367687016900028,0,0.412070114477788,0.320919209591815,0.252697211763798,0.25347929989024,1.50901073108861,0.655490552289177,0.704276676453562,0.574354689556133,0.476293691283074,0.579421629724277,1.73618298417335,0.412085900803307,0.147198920134397,0.342869252385415,0.3549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| |||
|short_description=p2@Meaf6 | |||
}} |
Revision as of 03:44, 14 September 2013
Short description: | p2@Meaf6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Meaf6_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | -11bp_to_ENSMUST00000154689_5end |
EntrezGene: | Meaf6 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.35e-26 | 23 |
neuroblast (sensu Vertebrata) | 1.35e-26 | 23 |
neuron | 1.12e-17 | 33 |
neuronal stem cell | 1.12e-17 | 33 |
neuroblast | 1.12e-17 | 33 |
electrically signaling cell | 1.12e-17 | 33 |
electrically responsive cell | 8.83e-14 | 39 |
electrically active cell | 8.83e-14 | 39 |
neural cell | 8.25e-12 | 43 |
ectodermal cell | 2.24e-11 | 44 |
neurectodermal cell | 2.24e-11 | 44 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.