FFCP PHASE1:Hg19::chr13:74707894..74707947,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=11278|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=6346|TSSclassifier=S|UniProt=Q8WWI3,Q9Y4X4|association_with_transcript=118bp_to_NM_007249,uc001vjf.2,uc001vjg.3_5end|coexpression_cluster_id=C18|description=CAGE_peak_6_at_KLF12_5end|id=chr13:74707894..74707947,-|ontology_enrichment_celltype=CL:0000542!7.75e-15!53;CL:0000051!7.75e-15!53;CL:0000838!1.28e-14!52;CL:0000791!4.34e-14!18;CL:0000789!4.34e-14!18;CL:0002420!4.34e-14!18;CL:0002419!4.34e-14!18;CL:0000790!4.34e-14!18;CL:0000084!2.56e-11!25;CL:0000827!2.56e-11!25;CL:0000625!1.55e-09!11;CL:0000236!1.70e-07!14|ontology_enrichment_celltype_v019=CL:0000791;1.32e-22;18!CL:0000789;1.32e-22;18!CL:0002419;1.32e-22;18!CL:0000084;1.47e-17;25!CL:0000625;6.40e-15;11!CL:0000542;2.49e-13;53!CL:0000236;1.55e-09;13!CL:0000624;7.67e-09;6|ontology_enrichment_celltype_v019_2=CL:0000791,1.75e-22,18;CL:0000789,1.75e-22,18;CL:0002420,1.75e-22,18;CL:0002419,1.75e-22,18;CL:0000790,1.75e-22,18;CL:0000838,1.75e-21,52;CL:0000542,7.83e-21,53;CL:0000051,7.83e-21,53;CL:0000084,2.66e-17,25;CL:0000827,2.66e-17,25;CL:0000625,7.17e-15,11;CL:0000236,7.33e-09,14;CL:0000624,7.71e-09,6;CL:0000738,9.99e-09,136;CL:0002087,2.80e-08,115|ontology_enrichment_development_v019=CL:0000790;1.32e-22;18!CL:0000051;2.49e-13;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!4.61e-28!115;UBERON:0001049!1.21e-15!57;UBERON:0005068!1.21e-15!57;UBERON:0006241!1.21e-15!57;UBERON:0007135!1.21e-15!57;UBERON:0002616!3.66e-15!59;UBERON:0001017!1.06e-14!82;UBERON:0002780!8.56e-14!41;UBERON:0001890!8.56e-14!41;UBERON:0006240!8.56e-14!41;UBERON:0005743!1.08e-13!86;UBERON:0003080!4.66e-13!42;UBERON:0000955!5.05e-13!69;UBERON:0006238!5.05e-13!69;UBERON:0001893!5.24e-13!34;UBERON:0002020!6.51e-13!34;UBERON:0003528!6.51e-13!34;UBERON:0001869!1.39e-12!32;UBERON:0000073!1.49e-12!94;UBERON:0001016!1.49e-12!94;UBERON:0002791!1.63e-12!33;UBERON:0002619!1.72e-11!22;UBERON:0000956!4.50e-11!25;UBERON:0000203!4.50e-11!25;UBERON:0001950!8.38e-11!20;UBERON:0003075!4.89e-09!86;UBERON:0007284!4.89e-09!86;UBERON:0000153!5.91e-09!129;UBERON:0007811!5.91e-09!129;UBERON:0002346!1.20e-08!90;UBERON:0000178!1.88e-08!15;UBERON:0000179!1.88e-08!15;UBERON:0000463!1.88e-08!15;UBERON:0003056!2.98e-07!61;UBERON:0000033!3.11e-07!123|ontology_enrichment_uberon_v019=UBERON:0001950;1.72e-12;20!UBERON:0002619;1.84e-12;22!UBERON:0000956;2.28e-10;25!UBERON:0000203;2.28e-10;25!UBERON:0001869;5.86e-10;32!UBERON:0001893;8.36e-10;34!UBERON:0000178;1.04e-09;15!UBERON:0000179;1.04e-09;15!UBERON:0000463;1.04e-09;15!UBERON:0003528;1.39e-09;34!UBERON:0002020;1.39e-09;34!UBERON:0000073;2.09e-09;53!UBERON:0002616;2.09e-09;53!UBERON:0002791;2.61e-09;32!UBERON:0002780;4.67e-09;41!UBERON:0001890;4.67e-09;41!UBERON:0002390;8.82e-09;32!UBERON:0007023;2.53e-07;114!UBERON:0001017;6.84e-07;75|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.93e-27,114;UBERON:0001049,1.05e-17,56;UBERON:0005068,1.05e-17,56;UBERON:0006241,1.05e-17,56;UBERON:0007135,1.05e-17,56;UBERON:0000073,8.30e-16,53;UBERON:0002616,8.30e-16,53;UBERON:0001017,1.52e-15,81;UBERON:0001016,2.19e-13,89;UBERON:0001950,6.47e-13,20;UBERON:0002619,6.98e-13,22;UBERON:0002780,1.60e-12,41;UBERON:0001890,1.60e-12,41;UBERON:0003080,1.60e-12,41;UBERON:0006240,1.60e-12,41;UBERON:0000955,3.06e-12,68;UBERON:0006238,3.06e-12,68;UBERON:0001893,5.83e-12,34;UBERON:0001869,6.26e-12,32;UBERON:0003528,7.62e-12,34;UBERON:0002020,7.62e-12,34;UBERON:0003075,2.54e-11,82;UBERON:0007284,2.54e-11,82;UBERON:0000956,9.99e-11,25;UBERON:0000203,9.99e-11,25;UBERON:0002791,1.14e-10,32;UBERON:0002346,2.92e-10,86;UBERON:0000178,1.25e-09,15;UBERON:0000179,1.25e-09,15;UBERON:0000463,1.25e-09,15;UBERON:0010371,1.04e-07,104;UBERON:0003056,2.56e-07,61;UBERON:0010314,9.53e-07,132|phase1_expression=0.181678379270557,0.428201047781966,0.281908808191942,0,0,0,0,0,0,0,0,0,0,0.618831764800233,0.331397375727916,0,0,0,0,0.123121058076788,0,0,0.572471974262113,0.273748850145768,0.125542639594803,0,0.0821005894499457,0,1.57345710739562,18.4238111086662,3.8704030829019,0,0,0,0.542270404062111,0.284338464974843,0,2.21598163412751,5.01361118675354,7.16135873362311,0.223915474239924,0.971680998056939,0.257575567634187,0.145398238779565,0,0,0.232429036905685,0.411167888021826,0,0,0.512321413058201,0,0,0,0,0,0.818718450173537,0,0.306083892370903,0.320929027076094,0,0.329851300186716,0.199463657621632,0,0,0,0,0.251248665256743,0,0.217188844705117,0,0.736555271975129,0,0,0.637812899895131,0,0,0,0.16072558669708,1.14005097496499,1.39241674039363,0.547992461293902,1.75996244461323,6.00752472388345,2.66852776159066,5.12076267079809,2.80277190925209,3.4485146397269,4.62731410949403,2.86216126360609,5.69212969109448,5.28513470433845,6.49864487812889,0,0.560508562981536,0,23.2117528734323,17.2924735609632,16.8593229179598,0.83593247695339,9.77766799900771,10.8892995318989,13.6378709885538,2.67385096524417,7.9543595018206,8.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=11278 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=6346 | |||
|TSSclassifier=S | |||
|UniProt=Q8WWI3,Q9Y4X4 | |||
|association_with_transcript=118bp_to_NM_007249,uc001vjf.2,uc001vjg.3_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_6_at_KLF12_5end | |||
|id=chr13:74707894..74707947,- | |||
|ontology_enrichment_celltype=CL:0000542!7.75e-15!53;CL:0000051!7.75e-15!53;CL:0000838!1.28e-14!52;CL:0000791!4.34e-14!18;CL:0000789!4.34e-14!18;CL:0002420!4.34e-14!18;CL:0002419!4.34e-14!18;CL:0000790!4.34e-14!18;CL:0000084!2.56e-11!25;CL:0000827!2.56e-11!25;CL:0000625!1.55e-09!11;CL:0000236!1.70e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.32e-22;18!CL:0000789;1.32e-22;18!CL:0002419;1.32e-22;18!CL:0000084;1.47e-17;25!CL:0000625;6.40e-15;11!CL:0000542;2.49e-13;53!CL:0000236;1.55e-09;13!CL:0000624;7.67e-09;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.75e-22,18;CL:0000789,1.75e-22,18;CL:0002420,1.75e-22,18;CL:0002419,1.75e-22,18;CL:0000790,1.75e-22,18;CL:0000838,1.75e-21,52;CL:0000542,7.83e-21,53;CL:0000051,7.83e-21,53;CL:0000084,2.66e-17,25;CL:0000827,2.66e-17,25;CL:0000625,7.17e-15,11;CL:0000236,7.33e-09,14;CL:0000624,7.71e-09,6;CL:0000738,9.99e-09,136;CL:0002087,2.80e-08,115 | |||
|ontology_enrichment_development_v019=CL:0000790;1.32e-22;18!CL:0000051;2.49e-13;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0001950;1.72e-12;20!UBERON:0002619;1.84e-12;22!UBERON:0000956;2.28e-10;25!UBERON:0000203;2.28e-10;25!UBERON:0001869;5.86e-10;32!UBERON:0001893;8.36e-10;34!UBERON:0000178;1.04e-09;15!UBERON:0000179;1.04e-09;15!UBERON:0000463;1.04e-09;15!UBERON:0003528;1.39e-09;34!UBERON:0002020;1.39e-09;34!UBERON:0000073;2.09e-09;53!UBERON:0002616;2.09e-09;53!UBERON:0002791;2.61e-09;32!UBERON:0002780;4.67e-09;41!UBERON:0001890;4.67e-09;41!UBERON:0002390;8.82e-09;32!UBERON:0007023;2.53e-07;114!UBERON:0001017;6.84e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.93e-27,114;UBERON:0001049,1.05e-17,56;UBERON:0005068,1.05e-17,56;UBERON:0006241,1.05e-17,56;UBERON:0007135,1.05e-17,56;UBERON:0000073,8.30e-16,53;UBERON:0002616,8.30e-16,53;UBERON:0001017,1.52e-15,81;UBERON:0001016,2.19e-13,89;UBERON:0001950,6.47e-13,20;UBERON:0002619,6.98e-13,22;UBERON:0002780,1.60e-12,41;UBERON:0001890,1.60e-12,41;UBERON:0003080,1.60e-12,41;UBERON:0006240,1.60e-12,41;UBERON:0000955,3.06e-12,68;UBERON:0006238,3.06e-12,68;UBERON:0001893,5.83e-12,34;UBERON:0001869,6.26e-12,32;UBERON:0003528,7.62e-12,34;UBERON:0002020,7.62e-12,34;UBERON:0003075,2.54e-11,82;UBERON:0007284,2.54e-11,82;UBERON:0000956,9.99e-11,25;UBERON:0000203,9.99e-11,25;UBERON:0002791,1.14e-10,32;UBERON:0002346,2.92e-10,86;UBERON:0000178,1.25e-09,15;UBERON:0000179,1.25e-09,15;UBERON:0000463,1.25e-09,15;UBERON:0010371,1.04e-07,104;UBERON:0003056,2.56e-07,61;UBERON:0010314,9.53e-07,132 | |||
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| |||
|short_description=p6@KLF12 | |||
}} |
Revision as of 02:45, 11 September 2013
Short description: | p6@KLF12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_KLF12_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 118bp_to_NM_007249, uc001vjf.2, uc001vjg.3_5end |
EntrezGene: | KLF12 |
HGNC: | 6346 |
UniProt: | Q8WWI3Q9Y4X4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.75e-22 | 18 |
alpha-beta T cell | 1.75e-22 | 18 |
immature T cell | 1.75e-22 | 18 |
mature T cell | 1.75e-22 | 18 |
immature alpha-beta T cell | 1.75e-22 | 18 |
lymphoid lineage restricted progenitor cell | 1.75e-21 | 52 |
lymphocyte | 7.83e-21 | 53 |
common lymphoid progenitor | 7.83e-21 | 53 |
T cell | 2.66e-17 | 25 |
pro-T cell | 2.66e-17 | 25 |
CD8-positive, alpha-beta T cell | 7.17e-15 | 11 |
B cell | 7.33e-09 | 14 |
CD4-positive, alpha-beta T cell | 7.71e-09 | 6 |
leukocyte | 9.99e-09 | 136 |
nongranular leukocyte | 2.80e-08 | 115 |
Ontology term | p-value | n |
---|---|---|
adult organism | 5.93e-27 | 114 |
neural tube | 1.05e-17 | 56 |
neural rod | 1.05e-17 | 56 |
future spinal cord | 1.05e-17 | 56 |
neural keel | 1.05e-17 | 56 |
regional part of nervous system | 8.30e-16 | 53 |
regional part of brain | 8.30e-16 | 53 |
central nervous system | 1.52e-15 | 81 |
nervous system | 2.19e-13 | 89 |
neocortex | 6.47e-13 | 20 |
regional part of cerebral cortex | 6.98e-13 | 22 |
regional part of forebrain | 1.60e-12 | 41 |
forebrain | 1.60e-12 | 41 |
anterior neural tube | 1.60e-12 | 41 |
future forebrain | 1.60e-12 | 41 |
brain | 3.06e-12 | 68 |
future brain | 3.06e-12 | 68 |
telencephalon | 5.83e-12 | 34 |
cerebral hemisphere | 6.26e-12 | 32 |
brain grey matter | 7.62e-12 | 34 |
gray matter | 7.62e-12 | 34 |
neural plate | 2.54e-11 | 82 |
presumptive neural plate | 2.54e-11 | 82 |
cerebral cortex | 9.99e-11 | 25 |
pallium | 9.99e-11 | 25 |
regional part of telencephalon | 1.14e-10 | 32 |
neurectoderm | 2.92e-10 | 86 |
blood | 1.25e-09 | 15 |
haemolymphatic fluid | 1.25e-09 | 15 |
organism substance | 1.25e-09 | 15 |
ecto-epithelium | 1.04e-07 | 104 |
pre-chordal neural plate | 2.56e-07 | 61 |
structure with developmental contribution from neural crest | 9.53e-07 | 132 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.