FFCP PHASE1:Hg19::chr1:154581182..154581204,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=103 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=225 | |||
|TSSclassifier=strong | |||
|UniProt=P55265 | |||
|association_with_transcript=-458bp_to_NM_001111,NM_015840,NM_015841_5end | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_7_at_ADAR_5end | |||
|id=chr1:154581182..154581204,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002322;8.47e-28;5!CL:0000540;3.76e-09;6!CL:0000404;3.76e-09;6!CL:0002321;4.24e-09;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,7.89e-28,5;CL:0000540,3.87e-09,6;CL:0000031,3.87e-09,6;CL:0000404,3.87e-09,6;CL:0000047,5.99e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000031;3.76e-09;6 | |||
|ontology_enrichment_disease=DOID:305!3.69e-09!106;DOID:0050687!2.79e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!7.52e-24!82;UBERON:0005743!9.65e-24!86;UBERON:0000073!1.36e-22!94;UBERON:0001016!1.36e-22!94;UBERON:0000955!8.56e-22!69;UBERON:0006238!8.56e-22!69;UBERON:0001049!2.95e-18!57;UBERON:0005068!2.95e-18!57;UBERON:0006241!2.95e-18!57;UBERON:0007135!2.95e-18!57;UBERON:0002616!1.15e-17!59;UBERON:0002346!2.73e-15!90;UBERON:0003075!3.05e-15!86;UBERON:0007284!3.05e-15!86;UBERON:0002780!2.34e-14!41;UBERON:0001890!2.34e-14!41;UBERON:0006240!2.34e-14!41;UBERON:0000033!2.61e-14!123;UBERON:0003080!9.98e-14!42;UBERON:0000153!1.53e-13!129;UBERON:0007811!1.53e-13!129;UBERON:0003056!3.23e-12!61;UBERON:0002020!1.46e-11!34;UBERON:0003528!1.46e-11!34;UBERON:0000924!2.39e-11!173;UBERON:0006601!2.39e-11!173;UBERON:0001893!3.74e-11!34;UBERON:0004121!3.87e-11!169;UBERON:0002791!7.07e-11!33;UBERON:0001869!9.66e-10!32;UBERON:0002308!7.88e-08!9;UBERON:0000125!7.88e-08!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0000125;2.84e-14;9!UBERON:0002308;2.84e-14;9!UBERON:0002298;4.52e-14;6!UBERON:0002148;2.22e-11;2!UBERON:0001875;2.22e-11;2!UBERON:0006331;2.22e-11;2!UBERON:0009662;2.22e-11;2!UBERON:0006514;2.22e-11;2!UBERON:0000988;7.19e-08;3!UBERON:0001896;7.19e-08;3!UBERON:0005290;7.19e-08;3!UBERON:0000073;2.05e-07;53!UBERON:0002616;2.05e-07;53!UBERON:0009663;3.21e-07;7!UBERON:0004733;4.31e-07;12!UBERON:0002028;4.31e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000125,4.37e-14,9;UBERON:0002308,4.37e-14,9;UBERON:0002298,7.35e-14,6;UBERON:0001875,3.23e-11,2;UBERON:0006514,3.23e-11,2;UBERON:0002148,3.98e-11,2;UBERON:0006331,3.98e-11,2;UBERON:0009662,3.98e-11,2;UBERON:0001017,6.44e-11,81;UBERON:0001049,1.66e-10,56;UBERON:0005068,1.66e-10,56;UBERON:0006241,1.66e-10,56;UBERON:0007135,1.66e-10,56;UBERON:0001016,1.50e-09,89;UBERON:0000073,2.41e-09,53;UBERON:0002616,2.41e-09,53;UBERON:0003076,2.36e-08,15;UBERON:0003057,2.36e-08,15;UBERON:0003075,7.98e-08,82;UBERON:0007284,7.98e-08,82;UBERON:0001896,8.00e-08,3;UBERON:0005290,8.00e-08,3;UBERON:0010096,8.00e-08,3;UBERON:0000988,1.06e-07,3;UBERON:0002346,2.37e-07,86;UBERON:0009663,3.51e-07,7;UBERON:0004733,5.44e-07,12;UBERON:0002028,5.44e-07,12;UBERON:0007277,5.44e-07,12;UBERON:0000955,9.19e-07,68;UBERON:0006238,9.19e-07,68;UBERON:0010371,9.99e-07,104 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0.369363174230364,0,0,0,0.684372125364421,0.251085279189606,0,0,0,0,0.383829398097213,0.309632246632152,0,0,0,0,0.142169232487422,0.293600439334847,0,0,0,0.223915474239924,0,0,0.145398238779565,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0.398927315243264,0,0,0,0,0.502497330513487,0.521482918420201,0,0,0,0.316462387440884,0,0.212604299965044,0.209658645508376,0,0.450530678524519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0.196709770113833,0.393010762749165,0.205601498999509,0,0.32592226663359,0,0,0,0.294605907474837,0.221533894583621,0,0,0,0,0,0,0,0,1.04535523804977,0,0,0.68725489096526,0,0,0,0,0,0,0,0.236777252044017,0,0.403213486449465,0.267440195783507,0.724122019413995,2.43806866313962,0,0,0,0.50133791063589,0,0,0.486634870302636,0.378139268656271,0.443458794925128,0.790513071238134,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0.56530794192401,0,0.275118041940067,0,0,0,0,0,0,0.24406205754817,0.367663080345869,0,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0,0,0.132409180813219,0,0,0,0,0.49333509683432,0,0.134710672069688,0,0.908144565869588,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0.247266929278557,0,0,0,0.125118519871964,0,0,0,0,0.113432183160021,0.179389635688862,0,0,0,0.206105058476878,0,0.18611685633159,0,0.292311015483596,0,0,0,0,0,0,0.193260853163297,0,0,2.5614478287215,7.95178609928912,2.78865462886844,2.798848485415,4.03713361401005,5.47466038613745,0,0,0,0,0,0,0,0,0.441175890929576,0.435758888184812,0.237270619111097,0.404493924480493,0,0.38474715694639,0,0,0,0,0,0,0,0.441463099414651,0.122988438543114,0.343135620597051,0,0,0,0.0925884451585296,0,0,0,3.24605133930215,0,0,0.462985512576611,0.190254152234598,0.790204397959275,1.71697232418975,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0.144119953416961,0,0.063497894292169,0,0,0,0,0,0,0.336393253036082,0,0.2933531432838,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0.479249710983165,0,0,0,0,0,0,0.197030760201927,0.215627574859517,0.128343036279748,0.76228387266739,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0.300946099727719,0,1.03473071292505,0,0,0.0868836144680828,0.783204629850962,1.71571711905428,0,0,0.213455115606889,0,0,0,0,0,0,0.128139149255701,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0.182091168006717,0,0.451199612907412,0,0,0,0,0,0,0.431831832204279,0,0.270946437543853,0,0,0.831076008928724,0,0,0,0.256450125116389,0,0,0,0.915694648183434,1.73269949833235,0.574265537996172,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0.190630193923825,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0.608731130888112,0,0,0,0,0.7133421029625,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0.142283686696828,0.956557636372934,0.199579371432817,0,0,0,0,0,0,0,0,0.1605880751037,0,0,0.343505344755765,0,0,0,0,0.556812347790485,0,0,0,0,0,0.146508179271894,0.606802608747567,0,0,0,0,0,0,0,0.111308705022906,0.329607748453519,0,0,0,0.503865495708552,0.511343412510774,0,0,0,0,0,0.0986434056369336,0,0,0.969332746095218,0.556608588971108,0,0,0.174919999992391,0,0.227586896570999,0.508507300585533,1.18193840883968,0,0,0,0.885741385813839,0.482385754501632,0,0.774054819518572,0.295547618953547,0.219385397153973,0.21787692703798,0,0,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0,0,0,0,0.208843899010911,1.34802265961354,0,0.468528891450678,0,0.19566461893209,0.242780379534093,0,0,0.91821828489147,0.126373159256976,0.150323419414493,1.03688191397247,0,0,0,0,0.569219092059585,0,0.347119476670262,0,0.0870592065804026,0,0,0.483781656445426,0.438535902517113,0.492692742319255,0,0.176512253383001,0,0,0.19871461170299,0.316553979779393,0.391102765469606,0.0801588202515337,0,0.19980960958213,0.144090417154106,0.572682980829578,0.514784993585894,0,0,0.235694034616795,0.271808412147228,0.209205692624666,0.101998217636322,0.577901179803038,1.20084057741958,1.09524303113594,0,0,0,0,0,0,0,0.429226048136571,0,0,0,0,0.0787831823072236,0.0824158583811665,0,0.295282444544246,0,0.795229689809303,0.272406812223151,5.14410075088061,9.90283943500083,9.55512777467126,0.2249738915515,0.77380195455795,0.425246896606173,0,0.0788057072991982,0.209818352539992,0.316801009558219,0.179287339332845,0.191915197319445,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,1.0342636508924,1.3223260174269,0,0,0.106787412567695,0,0,0,0,0.121792598380896,0,0,0,0,0,0.628216385000937,0.886068179966986,0,0.3755727921195,1.14681839138014,1.33114861844223,0.869349641179368,0.691743174681154,0.124980407962107,0.151649117541648,0,0,0,1.59413131471908,0,0,0,0.189403005275089,0,0,0.228840068396924,0,0,0,0,0.449803112163605,0,0,0,0,0.300515217994437,0,0,0,0.214821114084977,0,0,0.400027764663154,0,0.336749488765919,0,0,0,0.521988583930423,0,0,0.244736704506468,0,0,0,0,0,0,0,0.345430341731199,0,0.691292180758654,0,0,0,0,0.245772908753719,0,0,0,0.34442995932163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| |||
|short_description=p7@ADAR | |||
}} |
Revision as of 21:10, 10 January 2014
Short description: | p7@ADAR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_ADAR_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | -458bp_to_NM_001111, NM_015840, NM_015841_5end |
EntrezGene: | ADAR |
HGNC: | 225 |
UniProt: | P55265 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 7.89e-28 | 5 |
neuron | 3.87e-09 | 6 |
neuroblast | 3.87e-09 | 6 |
electrically signaling cell | 3.87e-09 | 6 |
neuronal stem cell | 5.99e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
neural nucleus | 4.37e-14 | 9 |
nucleus of brain | 4.37e-14 | 9 |
brainstem | 7.35e-14 | 6 |
globus pallidus | 3.23e-11 | 2 |
pallidum | 3.23e-11 | 2 |
locus ceruleus | 3.98e-11 | 2 |
brainstem nucleus | 3.98e-11 | 2 |
hindbrain nucleus | 3.98e-11 | 2 |
central nervous system | 6.44e-11 | 81 |
neural tube | 1.66e-10 | 56 |
neural rod | 1.66e-10 | 56 |
future spinal cord | 1.66e-10 | 56 |
neural keel | 1.66e-10 | 56 |
nervous system | 1.50e-09 | 89 |
regional part of nervous system | 2.41e-09 | 53 |
regional part of brain | 2.41e-09 | 53 |
posterior neural tube | 2.36e-08 | 15 |
chordal neural plate | 2.36e-08 | 15 |
neural plate | 7.98e-08 | 82 |
presumptive neural plate | 7.98e-08 | 82 |
medulla oblongata | 8.00e-08 | 3 |
myelencephalon | 8.00e-08 | 3 |
future myelencephalon | 8.00e-08 | 3 |
pons | 1.06e-07 | 3 |
neurectoderm | 2.37e-07 | 86 |
telencephalic nucleus | 3.51e-07 | 7 |
segmental subdivision of hindbrain | 5.44e-07 | 12 |
hindbrain | 5.44e-07 | 12 |
presumptive hindbrain | 5.44e-07 | 12 |
brain | 9.19e-07 | 68 |
future brain | 9.19e-07 | 68 |
ecto-epithelium | 9.99e-07 | 104 |