FFCP PHASE1:Hg19::chr2:157198916..157198978,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4929 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7981 | |||
|TSSclassifier=strong | |||
|UniProt=P43354 | |||
|association_with_transcript=-56bp_to_ENST00000409572_5end | |||
|coexpression_cluster_id=C3394 | |||
|description=CAGE_peak_2_at_NR4A2_5end | |||
|id=chr2:157198916..157198978,- | |||
|ontology_enrichment_celltype=CL:0002057!8.48e-25!42;CL:0000738!3.75e-24!140;CL:0000860!1.79e-23!45;CL:0000766!6.08e-23!76;CL:0000557!1.15e-19!71;CL:0002087!1.21e-19!119;CL:0002031!1.49e-19!124;CL:0002009!2.13e-18!65;CL:0002194!1.88e-17!63;CL:0000576!1.88e-17!63;CL:0000040!1.88e-17!63;CL:0000559!1.88e-17!63;CL:0000839!3.59e-17!70;CL:0000037!2.10e-16!172;CL:0000566!2.10e-16!172;CL:0002032!2.79e-15!165;CL:0000837!2.79e-15!165;CL:0000988!2.64e-14!182;CL:0000763!2.27e-12!112;CL:0000049!2.27e-12!112;CL:0002393!5.25e-07!9;CL:0002397!5.25e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.91e-18;33!CL:0002057;4.91e-18;33!CL:0000576;4.36e-15;48!CL:0000473;1.39e-13;39!CL:0000234;1.39e-13;39!CL:0000766;2.62e-12;69!CL:0002087;1.73e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.01e-25,42;CL:0002057,5.01e-25,42;CL:0000738,1.44e-24,136;CL:0000766,7.26e-24,72;CL:0000473,1.03e-22,48;CL:0000234,1.03e-22,48;CL:0000557,1.75e-20,67;CL:0002087,5.02e-20,115;CL:0002031,9.74e-20,120;CL:0002009,3.16e-19,61;CL:0002194,2.97e-18,59;CL:0000576,2.97e-18,59;CL:0000040,2.97e-18,59;CL:0000559,2.97e-18,59;CL:0000839,1.19e-17,66;CL:0000037,1.08e-16,168;CL:0002032,1.86e-15,161;CL:0000837,1.86e-15,161;CL:0000988,4.13e-15,177;CL:0000763,1.23e-12,108;CL:0000049,1.23e-12,108;CL:0002393,4.64e-07,9;CL:0002397,4.64e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;1.94e-18;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.56e-22!115;UBERON:0002390!5.95e-21!102;UBERON:0003061!5.95e-21!102;UBERON:0002371!9.02e-20!80;UBERON:0001474!3.04e-19!86;UBERON:0002193!1.16e-16!112;UBERON:0004765!1.29e-16!101;UBERON:0001434!1.29e-16!101;UBERON:0001049!6.79e-14!57;UBERON:0005068!6.79e-14!57;UBERON:0006241!6.79e-14!57;UBERON:0007135!6.79e-14!57;UBERON:0003080!3.25e-11!42;UBERON:0002616!4.47e-11!59;UBERON:0002780!6.00e-11!41;UBERON:0001890!6.00e-11!41;UBERON:0006240!6.00e-11!41;UBERON:0002405!2.31e-09!115;UBERON:0000955!3.39e-09!69;UBERON:0006238!3.39e-09!69;UBERON:0001017!1.10e-08!82;UBERON:0002020!2.18e-08!34;UBERON:0003528!2.18e-08!34;UBERON:0005743!3.19e-08!86;UBERON:0001893!3.49e-08!34;UBERON:0002791!4.50e-08!33;UBERON:0003075!1.36e-07!86;UBERON:0007284!1.36e-07!86;UBERON:0001869!1.62e-07!32;UBERON:0002204!7.65e-07!167;UBERON:0000073!9.35e-07!94;UBERON:0001016!9.35e-07!94 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;4.34e-08;41!UBERON:0001890;4.34e-08;41!UBERON:0000073;8.82e-08;53!UBERON:0002616;8.82e-08;53!UBERON:0003528;2.87e-07;34!UBERON:0002020;2.87e-07;34!UBERON:0001893;4.76e-07;34!UBERON:0002791;5.20e-07;32!UBERON:0001869;6.94e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.68e-22,114;UBERON:0002390,1.56e-21,98;UBERON:0003061,1.56e-21,98;UBERON:0002371,1.73e-20,76;UBERON:0001474,5.44e-20,82;UBERON:0004765,2.34e-17,90;UBERON:0002193,6.20e-17,108;UBERON:0001434,1.14e-16,100;UBERON:0002405,7.04e-14,93;UBERON:0001049,9.97e-14,56;UBERON:0005068,9.97e-14,56;UBERON:0006241,9.97e-14,56;UBERON:0007135,9.97e-14,56;UBERON:0000073,1.20e-12,53;UBERON:0002616,1.20e-12,53;UBERON:0002780,4.85e-11,41;UBERON:0001890,4.85e-11,41;UBERON:0003080,4.85e-11,41;UBERON:0006240,4.85e-11,41;UBERON:0000955,8.74e-09,68;UBERON:0006238,8.74e-09,68;UBERON:0003528,1.87e-08,34;UBERON:0002020,1.87e-08,34;UBERON:0003075,1.89e-08,82;UBERON:0007284,1.89e-08,82;UBERON:0001893,3.01e-08,34;UBERON:0001017,3.02e-08,81;UBERON:0002791,7.57e-08,32;UBERON:0001869,1.41e-07,32;UBERON:0002346,3.92e-07,86;UBERON:0001016,7.56e-07,89 | |||
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| |||
|short_description=p2@NR4A2 | |||
}} |
Revision as of 06:07, 21 January 2014
Short description: | p2@NR4A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_NR4A2_5end |
Coexpression cluster: | C3394_Eosinophils_CD14_cerebellum_pineal_Neutrophils_CD4_Peripheral |
Association with transcript: | -56bp_to_ENST00000409572_5end |
EntrezGene: | NR4A2 |
HGNC: | 7981 |
UniProt: | P43354 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.01e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.01e-25 | 42 |
leukocyte | 1.44e-24 | 136 |
myeloid leukocyte | 7.26e-24 | 72 |
defensive cell | 1.03e-22 | 48 |
phagocyte | 1.03e-22 | 48 |
granulocyte monocyte progenitor cell | 1.75e-20 | 67 |
nongranular leukocyte | 5.02e-20 | 115 |
hematopoietic lineage restricted progenitor cell | 9.74e-20 | 120 |
macrophage dendritic cell progenitor | 3.16e-19 | 61 |
monopoietic cell | 2.97e-18 | 59 |
monocyte | 2.97e-18 | 59 |
monoblast | 2.97e-18 | 59 |
promonocyte | 2.97e-18 | 59 |
myeloid lineage restricted progenitor cell | 1.19e-17 | 66 |
hematopoietic stem cell | 1.08e-16 | 168 |
hematopoietic oligopotent progenitor cell | 1.86e-15 | 161 |
hematopoietic multipotent progenitor cell | 1.86e-15 | 161 |
hematopoietic cell | 4.13e-15 | 177 |
myeloid cell | 1.23e-12 | 108 |
common myeloid progenitor | 1.23e-12 | 108 |
intermediate monocyte | 4.64e-07 | 9 |
CD14-positive, CD16-positive monocyte | 4.64e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.68e-22 | 114 |
hematopoietic system | 1.56e-21 | 98 |
blood island | 1.56e-21 | 98 |
bone marrow | 1.73e-20 | 76 |
bone element | 5.44e-20 | 82 |
skeletal element | 2.34e-17 | 90 |
hemolymphoid system | 6.20e-17 | 108 |
skeletal system | 1.14e-16 | 100 |
immune system | 7.04e-14 | 93 |
neural tube | 9.97e-14 | 56 |
neural rod | 9.97e-14 | 56 |
future spinal cord | 9.97e-14 | 56 |
neural keel | 9.97e-14 | 56 |
regional part of nervous system | 1.20e-12 | 53 |
regional part of brain | 1.20e-12 | 53 |
regional part of forebrain | 4.85e-11 | 41 |
forebrain | 4.85e-11 | 41 |
anterior neural tube | 4.85e-11 | 41 |
future forebrain | 4.85e-11 | 41 |
brain | 8.74e-09 | 68 |
future brain | 8.74e-09 | 68 |
brain grey matter | 1.87e-08 | 34 |
gray matter | 1.87e-08 | 34 |
neural plate | 1.89e-08 | 82 |
presumptive neural plate | 1.89e-08 | 82 |
telencephalon | 3.01e-08 | 34 |
central nervous system | 3.02e-08 | 81 |
regional part of telencephalon | 7.57e-08 | 32 |
cerebral hemisphere | 1.41e-07 | 32 |
neurectoderm | 3.92e-07 | 86 |
nervous system | 7.56e-07 | 89 |