FFCP PHASE1:Hg19::chr4:926069..926123,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2580 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4113 | |||
|TSSclassifier=strong | |||
|UniProt=O14976,Q6P490,D6RAW3,D6RF16,D6RAQ7 | |||
|association_with_transcript=0bp_to_ENST00000314167,ENST00000398567,ENST00000502656,ENST00000507580,ENST00000512325_5end | |||
|description=CAGE_peak_1_at_GAK_5end | |||
|id=chr4:926069..926123,- | |||
|ontology_enrichment_celltype=CL:0000766!2.34e-19!76;CL:0002057!4.17e-18!42;CL:0002009!2.54e-17!65;CL:0000557!7.06e-17!71;CL:0002194!1.73e-16!63;CL:0000576!1.73e-16!63;CL:0000040!1.73e-16!63;CL:0000559!1.73e-16!63;CL:0000738!5.18e-16!140;CL:0000860!1.34e-14!45;CL:0000839!2.78e-14!70;CL:0000763!1.33e-12!112;CL:0000049!1.33e-12!112;CL:0000988!2.97e-11!182;CL:0002087!3.12e-11!119;CL:0002031!1.71e-10!124;CL:0000037!2.67e-10!172;CL:0000566!2.67e-10!172;CL:0002032!1.16e-09!165;CL:0000837!1.16e-09!165 | |||
|ontology_enrichment_celltype_v019=CL:0000473;3.99e-15;39!CL:0000234;3.99e-15;39!CL:0000860;7.06e-15;33!CL:0002057;7.06e-15;33!CL:0000576;3.87e-11;48!CL:0000766;1.10e-09;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.29e-22,72;CL:0000473,5.36e-21,48;CL:0000234,5.36e-21,48;CL:0002009,1.09e-20,61;CL:0000557,5.47e-20,67;CL:0002194,8.16e-20,59;CL:0000576,8.16e-20,59;CL:0000040,8.16e-20,59;CL:0000559,8.16e-20,59;CL:0000860,4.17e-18,42;CL:0002057,4.17e-18,42;CL:0000738,5.83e-18,136;CL:0000839,4.36e-17,66;CL:0000763,1.64e-14,108;CL:0000049,1.64e-14,108;CL:0002087,6.09e-13,115;CL:0000988,2.32e-12,177;CL:0002031,4.34e-12,120;CL:0000037,1.29e-11,168;CL:0002032,5.93e-11,161;CL:0000837,5.93e-11,161 | |||
|ontology_enrichment_development_v019=CL:0002057;1.50e-13;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.32e-20!112;UBERON:0002390!3.22e-20!102;UBERON:0003061!3.22e-20!102;UBERON:0007023!5.28e-16!115;UBERON:0003081!1.49e-14!216;UBERON:0002371!1.67e-14!80;UBERON:0002405!1.37e-12!115;UBERON:0001474!6.99e-12!86;UBERON:0001049!1.25e-09!57;UBERON:0005068!1.25e-09!57;UBERON:0006241!1.25e-09!57;UBERON:0007135!1.25e-09!57;UBERON:0002616!8.69e-08!59;UBERON:0004765!1.66e-07!101;UBERON:0001434!1.66e-07!101;UBERON:0002780!6.60e-07!41;UBERON:0001890!6.60e-07!41;UBERON:0006240!6.60e-07!41;UBERON:0003075!6.83e-07!86;UBERON:0007284!6.83e-07!86;UBERON:0000025!8.36e-07!194;UBERON:0000178!9.69e-07!15;UBERON:0000179!9.69e-07!15;UBERON:0000463!9.69e-07!15;UBERON:0003080!9.71e-07!42 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,3.11e-23,108;UBERON:0002390,5.63e-23,98;UBERON:0003061,5.63e-23,98;UBERON:0002405,7.79e-18,93;UBERON:0002371,4.28e-17,76;UBERON:0007023,8.01e-16,114;UBERON:0003081,2.93e-14,203;UBERON:0001474,4.78e-14,82;UBERON:0004765,8.13e-11,90;UBERON:0001049,8.18e-10,56;UBERON:0005068,8.18e-10,56;UBERON:0006241,8.18e-10,56;UBERON:0007135,8.18e-10,56;UBERON:0000073,2.07e-09,53;UBERON:0002616,2.07e-09,53;UBERON:0001434,2.79e-08,100;UBERON:0003075,1.98e-07,82;UBERON:0007284,1.98e-07,82;UBERON:0002780,6.60e-07,41;UBERON:0001890,6.60e-07,41;UBERON:0003080,6.60e-07,41;UBERON:0006240,6.60e-07,41;UBERON:0000025,8.65e-07,192;UBERON:0000178,9.69e-07,15;UBERON:0000179,9.69e-07,15;UBERON:0000463,9.69e-07,15 | |||
|phase1_expression=19.9846217197612,22.2664544846622,21.2841150184916,11.0080628188443,16.5375604938096,15.7020934338066,17.7309914717817,34.1128731650489,27.1633053327832,36.1228886657218,99.0877658520847,30.3633507260939,32.4433383220998,19.3075510617673,28.8315716883287,30.2546315903299,25.313170177007,26.2911632539454,24.3966399395254,39.0293754103418,44.6761513824914,47.0182082217132,23.4713509447466,22.8580289871717,21.4677913707113,31.2530829509121,30.29511750703,31.4843125254717,44.4501632839262,47.5948453640544,49.3863433378282,48.7293248973831,42.7712404665115,39.5636790878463,15.1835713137391,30.5663849847956,17.0288254814211,83.0993112797816,84.6297568323998,73.5666851726738,46.1265876934244,43.0778575805243,46.3636021741536,50.1623923789498,53.2805080601221,48.0316441151876,60.1991205585723,71.9543804038195,55.7471467611186,60.1277099953294,67.1141051106244,43.7492125293883,68.2596447858505,68.4213764598856,71.7760378950011,54.9667631464406,51.0334500608172,35.2815870578783,68.8688757834531,52.6323604404794,69.0484095862965,62.3418957352893,57.44553339503,41.770025552204,83.5802607250322,87.3773246024355,72.2473808834867,72.8621129244555,65.1853648025252,45.6096573880745,70.8317418081041,61.5023652099233,44.3047342417238,39.2934832540212,42.7334642929737,30.6101622442229,46.279396032356,39.0459921387916,54.8074250637043,39.0467458925511,42.7670855978044,40.7341062895134,12.3197371122926,23.4839602842717,24.016749854316,26.88400402169,26.8265311314128,27.5881171178152,16.5261218196216,26.7135051269902,59.1981487873826,66.945039588287,51.6068857969059,30.3994055731759,42.0381422236152,17.11996551038,43.8662787353848,53.8424744966356,41.5315027979009,39.2888264168093,25.7478590640536,21.305151258063,23.3792074089494,29.6351815314562,31.8174380072824,25.2548639825328,43.5994220661675,39.452126475508,36.9368547070054,42.2605414831448,37.8599524366612,34.1967641167362,27.5813007481432,28.3593277775096,31.360657141493,35.9190616351285,37.9388288665902,28.5210779750583,34.6636978066719,30.2637143607892,27.3455050619696,23.7613011112094,40.2035567937653,36.8601440124725,37.4792179657038,35.9901423106906,31.2028638829998,49.9984723197336,53.4880391567015,48.5161753007377,31.694892620815,24.8159318090345,15.8549576685978,22.4092274478431,26.0695713530663,21.2924382872411,13.5198610998687,26.2782829963423,17.6780108096807,23.0598573361067,19.9384963523396,53.0465255765736,72.1304670819234,46.3480553480537,62.6376469753539,53.8060888254736,50.5240249971688,46.9826529881524,42.8996183085096,42.3461551515704,29.8143611050058,36.9900875895634,32.2840666495063,36.1797082831366,38.5939481313113,40.4423521651899,31.5582399470584,22.7406748069009,28.4613010149368,33.472061276467,39.4772730766964,30.4108842287405,40.7583636105443,26.8394048652484,44.5578071334968,22.7714307124403,34.8020527570563,32.2068834182302,22.9974956198825,33.2242980848845,27.1138581017003,117.284571518096,96.9450660370813,59.7448851435272,21.3697939228987,17.9815326563703,42.7681654026697,42.4518198708244,21.2801029319014,33.6406560085384,37.3621485053967,29.8467733584764,25.5193049027808,22.6313929077076,19.7788902767285,32.0877746607255,26.5040925260799,39.6003219799116,29.0308871452198,35.3692529357559,25.7051730549098,20.1987337667276,20.2341180460164,20.927170198635,19.19049209796,20.3904966737535,25.3148163880625,27.3240657174872,22.2540236350701,61.8909726117858,71.1431960398076,21.7153587000745,24.523229894905,22.1651292387346,23.7047915275652,22.9865846849265,26.1414222497478,19.8506320530037,42.5153436582603,18.1523780495782,15.6829606858076,42.0127534518163,18.4464027336806,43.0259701876201,17.8672182078326,39.9999907411801,19.2925270219173,46.9526820094053,16.1087322624024,19.2358807614386,39.0510551768276,20.9564364313492,23.9080435157788,23.9643457922488,26.1836275767201,28.3936549435114,33.1768480672499,32.7348527754069,28.9322917745101,31.9276049447341,24.9797642366872,29.1981887260664,28.1609158193669,37.3079744151873,46.9658732598434,21.360924689471,28.1532997851138,13.605282004582,15.6783761772635,19.521893420562,15.3308622098028,13.7264049778216,15.4225902422213,12.9438055833758,17.2674889310305,19.2373578473195,35.4314618219831,42.0725321410337,44.8615672351226,35.2820907325301,59.5748663662605,34.3989525837169,49.6263521612379,27.3707121637083,24.5976877086227,25.7351715447788,43.3513627364071,31.4724909121335,24.8306561856728,24.8137033024859,37.142146805377,48.8769349081402,15.8764476227801,24.6931762596914,24.8906431779942,29.7394882387812,34.2609279306692,32.5334600321163,32.3983803163303,30.9055018354154,49.7358352296543,56.3950278985563,53.8044807485196,10.3107217385455,21.6696945376529,23.3928910449938,23.1060988573349,32.2603671750498,32.9709104082082,9.36060152002293,24.0372224856107,46.4414978811329,38.0476677020778,39.6401240958833,28.7010482200604,58.4442291104165,64.4695959655258,59.8753561079468,31.3623852745137,35.7408238834262,26.0102053693826,34.8727672314072,31.3891249559962,21.0480880306127,20.942017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| |||
|short_description=p1@GAK | |||
}} |
Revision as of 23:45, 21 January 2014
Short description: | p1@GAK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GAK_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000314167, ENST00000398567, ENST00000502656, ENST00000507580, ENST00000512325_5end |
EntrezGene: | GAK |
HGNC: | 4113 |
UniProt: | O14976Q6P490D6RAW3D6RF16D6RAQ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.29e-22 | 72 |
defensive cell | 5.36e-21 | 48 |
phagocyte | 5.36e-21 | 48 |
macrophage dendritic cell progenitor | 1.09e-20 | 61 |
granulocyte monocyte progenitor cell | 5.47e-20 | 67 |
monopoietic cell | 8.16e-20 | 59 |
monocyte | 8.16e-20 | 59 |
monoblast | 8.16e-20 | 59 |
promonocyte | 8.16e-20 | 59 |
classical monocyte | 4.17e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.17e-18 | 42 |
leukocyte | 5.83e-18 | 136 |
myeloid lineage restricted progenitor cell | 4.36e-17 | 66 |
myeloid cell | 1.64e-14 | 108 |
common myeloid progenitor | 1.64e-14 | 108 |
nongranular leukocyte | 6.09e-13 | 115 |
hematopoietic cell | 2.32e-12 | 177 |
hematopoietic lineage restricted progenitor cell | 4.34e-12 | 120 |
hematopoietic stem cell | 1.29e-11 | 168 |
hematopoietic oligopotent progenitor cell | 5.93e-11 | 161 |
hematopoietic multipotent progenitor cell | 5.93e-11 | 161 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 3.11e-23 | 108 |
hematopoietic system | 5.63e-23 | 98 |
blood island | 5.63e-23 | 98 |
immune system | 7.79e-18 | 93 |
bone marrow | 4.28e-17 | 76 |
adult organism | 8.01e-16 | 114 |
lateral plate mesoderm | 2.93e-14 | 203 |
bone element | 4.78e-14 | 82 |
skeletal element | 8.13e-11 | 90 |
neural tube | 8.18e-10 | 56 |
neural rod | 8.18e-10 | 56 |
future spinal cord | 8.18e-10 | 56 |
neural keel | 8.18e-10 | 56 |
regional part of nervous system | 2.07e-09 | 53 |
regional part of brain | 2.07e-09 | 53 |
skeletal system | 2.79e-08 | 100 |
neural plate | 1.98e-07 | 82 |
presumptive neural plate | 1.98e-07 | 82 |
regional part of forebrain | 6.60e-07 | 41 |
forebrain | 6.60e-07 | 41 |
anterior neural tube | 6.60e-07 | 41 |
future forebrain | 6.60e-07 | 41 |
tube | 8.65e-07 | 192 |
blood | 9.69e-07 | 15 |
haemolymphatic fluid | 9.69e-07 | 15 |
organism substance | 9.69e-07 | 15 |