FFCP PHASE1:Mm9::chr7:144505942..144505949,-: Difference between revisions
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{{FFCP|EntrezGene=13593|HGNC=|MCL_coexpression_id=618|UniProt=Q6NXL3|association_with_transcript=147bp_to_ENSMUST00000168203_5end|description=CAGE_peak_10_at_Ebf3_5end|id=chr7:144505942..144505949,-|ontology_enrichment_celltype=CL:0000117!2.16e-10!23;CL:0000337!2.16e-10!23;CL:0000540!9.42e-08!33;CL:0000047!9.42e-08!33;CL:0000031!9.42e-08!33;CL:0000404!9.42e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,4.99e-36,23;CL:0000337,4.99e-36,23;CL:0000540,1.01e-24,33;CL:0000047,1.01e-24,33;CL:0000031,1.01e-24,33;CL:0000404,1.01e-24,33;CL:0000393,1.04e-20,39;CL:0000211,1.04e-20,39;CL:0000120,3.93e-19,3;CL:0002612,7.84e-19,3;CL:0002319,1.18e-18,43;CL:0002613,2.04e-18,3;CL:0000221,3.37e-18,44;CL:0000133,3.37e-18,44;CL:0002611,8.36e-13,2;CL:0002321,6.80e-11,70;CL:0000723,5.10e-08,91;CL:0000048,5.10e-08,91;CL:0000034,2.01e-07,97|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002240!1.13e-08!6;UBERON:0005174!1.13e-08!6;UBERON:0001137!1.13e-08!6;UBERON:0001948!1.15e-07!5;UBERON:0002315!1.15e-07!5;UBERON:0003076!1.99e-07!12;UBERON:0003057!1.99e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0001948,5.82e-30,5;UBERON:0002315,5.82e-30,5;UBERON:0002240,5.55e-25,6;UBERON:0005174,5.55e-25,6;UBERON:0001137,5.55e-25,6;UBERON:0002257,7.84e-19,3;UBERON:0002020,3.75e-13,34;UBERON:0002256,8.36e-13,2;UBERON:0003076,1.73e-12,12;UBERON:0003057,1.73e-12,12;UBERON:0002420,5.75e-12,8;UBERON:0007245,5.75e-12,8;UBERON:0010009,5.75e-12,8;UBERON:0010011,5.75e-12,8;UBERON:0000454,5.75e-12,8;UBERON:0000369,2.72e-11,5;UBERON:0002435,2.72e-11,5;UBERON:0000204,2.72e-11,5;UBERON:0010082,2.72e-11,5;UBERON:0001017,2.20e-10,73;UBERON:0001016,4.58e-10,75;UBERON:0001049,3.08e-08,52;UBERON:0005068,3.08e-08,52;UBERON:0006241,3.08e-08,52;UBERON:0007135,3.08e-08,52;UBERON:0000073,6.82e-08,54;UBERON:0004121,1.30e-07,95;UBERON:0000924,1.30e-07,95;UBERON:0006601,1.30e-07,95;UBERON:0000489,4.33e-07,21|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.85559506063035,3.1739458756322,1.90149421051854,0,0,0,0,0,0,0,0,0,0,1.42825492201902,1.98781686856452,0,0,0,0,0.255374676170375,0.46081959976873,2.76961204233407,1.37231465403614,1.56274011167028,0,1.12552522006336,0.45839474333043,1.47314292736834,2.70506193518296,4.10078780815661,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0.346970653532272,0.304465478312141,0,0,0.117588707135705,0,0,0,0.884610551949874,0,0,0,0,0.292780797011547,0,0,0,0,0,0.149790639404823,0,0.125654352112864,0,0,0,0,0,0.124406970610093,0,0,0.130120442962704,0.459804208866946,0.360124259610698,0,0.476255494059295,0.12811372028485,0.374806898238915,0,0.431135985865684,0.378212160335639,1.23165786914764,0.43839146485515,0,0,0,0,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0.164167464079095,0,0,0,0,0,0,0,0,0.426576501070468,0.232236671860439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80275294993896,0.117211686592203,0,0,0,0,0,0,0,0,0.404810701674894,0,0.395287777946524,0,0,0,0,0,0,0.485561272309963,0,0,0,0.307435147943927,0,0,0,0,0,0,0,0.36012218806262,0,0,0,0.356737635204141,0,0,0,0,0,0,0.161464426695906,0,0,0,0,0.556275906031529,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0.218362563746178,0.269728692769641,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202725215290164,0,0.129920822977795,0,0,0,0,0,0,0,0.0974578807397524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,1.19707462020309,1.02440163452481,0.972426868273176,0,0,0.222246727801615,0.412070114477788,0.320919209591815,0.252697211763798,0,0.377252682772152,0.187283014939765,0.192075457214608,0.34461281373368,0,0.115884325944855,0,0.412085900803307,0.294397840268795,0.685738504770831,0.354951612318675,0.238436189947321,0.290692833264657,0,0.0846146078916765,0.182927972872773,0.526139422875686,0.543216455383447,0,0.237270036248348,0.0985044823755635,0,0.464810523557898,0.192906610981141,0.749431733813838,0,0.644613162144895,0.57386499620653,0.220591419119515,0|short_description=p10@Ebf3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:13593 | |||
|HGNC= | |||
|MCL_coexpression_id=618 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q6NXL3 | |||
|association_with_transcript=147bp_to_ENSMUST00000168203_5end | |||
|cluster_id=chr7:144505942..144505949,- | |||
|description=CAGE_peak_10_at_Ebf3_5end | |||
|id=chr7:144505942..144505949,- | |||
|ontology_enrichment_celltype=CL:0000117!2.16e-10!23;CL:0000337!2.16e-10!23;CL:0000540!9.42e-08!33;CL:0000047!9.42e-08!33;CL:0000031!9.42e-08!33;CL:0000404!9.42e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.99e-36,23;CL:0000337,4.99e-36,23;CL:0000540,1.01e-24,33;CL:0000047,1.01e-24,33;CL:0000031,1.01e-24,33;CL:0000404,1.01e-24,33;CL:0000393,1.04e-20,39;CL:0000211,1.04e-20,39;CL:0000120,3.93e-19,3;CL:0002612,7.84e-19,3;CL:0002319,1.18e-18,43;CL:0002613,2.04e-18,3;CL:0000221,3.37e-18,44;CL:0000133,3.37e-18,44;CL:0002611,8.36e-13,2;CL:0002321,6.80e-11,70;CL:0000723,5.10e-08,91;CL:0000048,5.10e-08,91;CL:0000034,2.01e-07,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002240!1.13e-08!6;UBERON:0005174!1.13e-08!6;UBERON:0001137!1.13e-08!6;UBERON:0001948!1.15e-07!5;UBERON:0002315!1.15e-07!5;UBERON:0003076!1.99e-07!12;UBERON:0003057!1.99e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001948,5.82e-30,5;UBERON:0002315,5.82e-30,5;UBERON:0002240,5.55e-25,6;UBERON:0005174,5.55e-25,6;UBERON:0001137,5.55e-25,6;UBERON:0002257,7.84e-19,3;UBERON:0002020,3.75e-13,34;UBERON:0002256,8.36e-13,2;UBERON:0003076,1.73e-12,12;UBERON:0003057,1.73e-12,12;UBERON:0002420,5.75e-12,8;UBERON:0007245,5.75e-12,8;UBERON:0010009,5.75e-12,8;UBERON:0010011,5.75e-12,8;UBERON:0000454,5.75e-12,8;UBERON:0000369,2.72e-11,5;UBERON:0002435,2.72e-11,5;UBERON:0000204,2.72e-11,5;UBERON:0010082,2.72e-11,5;UBERON:0001017,2.20e-10,73;UBERON:0001016,4.58e-10,75;UBERON:0001049,3.08e-08,52;UBERON:0005068,3.08e-08,52;UBERON:0006241,3.08e-08,52;UBERON:0007135,3.08e-08,52;UBERON:0000073,6.82e-08,54;UBERON:0004121,1.30e-07,95;UBERON:0000924,1.30e-07,95;UBERON:0006601,1.30e-07,95;UBERON:0000489,4.33e-07,21 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.85559506063035,3.1739458756322,1.90149421051854,0,0,0,0,0,0,0,0,0,0,1.42825492201902,1.98781686856452,0,0,0,0,0.255374676170375,0.46081959976873,2.76961204233407,1.37231465403614,1.56274011167028,0,1.12552522006336,0.45839474333043,1.47314292736834,2.70506193518296,4.10078780815661,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0.346970653532272,0.304465478312141,0,0,0.117588707135705,0,0,0,0.884610551949874,0,0,0,0,0.292780797011547,0,0,0,0,0,0.149790639404823,0,0.125654352112864,0,0,0,0,0,0.124406970610093,0,0,0.130120442962704,0.459804208866946,0.360124259610698,0,0.476255494059295,0.12811372028485,0.374806898238915,0,0.431135985865684,0.378212160335639,1.23165786914764,0.43839146485515,0,0,0,0,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0,0,0.164167464079095,0,0,0,0,0,0,0,0,0.426576501070468,0.232236671860439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80275294993896,0.117211686592203,0,0,0,0,0,0,0,0,0.404810701674894,0,0.395287777946524,0,0,0,0,0,0,0.485561272309963,0,0,0,0.307435147943927,0,0,0,0,0,0,0,0.36012218806262,0,0,0,0.356737635204141,0,0,0,0,0,0,0.161464426695906,0,0,0,0,0.556275906031529,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0.218362563746178,0.269728692769641,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202725215290164,0,0.129920822977795,0,0,0,0,0,0,0,0.0974578807397524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,1.19707462020309,1.02440163452481,0.972426868273176,0,0,0.222246727801615,0.412070114477788,0.320919209591815,0.252697211763798,0,0.377252682772152,0.187283014939765,0.192075457214608,0.34461281373368,0,0.115884325944855,0,0.412085900803307,0.294397840268795,0.685738504770831,0.354951612318675,0.238436189947321,0.290692833264657,0,0.0846146078916765,0.182927972872773,0.526139422875686,0.543216455383447,0,0.237270036248348,0.0985044823755635,0,0.464810523557898,0.192906610981141,0.749431733813838,0,0.644613162144895,0.57386499620653,0.220591419119515,0 | |||
|short_description=p10@Ebf3 | |||
}} |
Revision as of 10:43, 4 August 2015
Short description: | p10@Ebf3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_Ebf3_5end |
Coexpression cluster: | MCL_coexpression_mm9:618 |
Association with transcript: | 147bp_to_ENSMUST00000168203_5end |
EntrezGene: | 13593 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.99e-36 | 23 |
neuroblast (sensu Vertebrata) | 4.99e-36 | 23 |
neuron | 1.01e-24 | 33 |
neuronal stem cell | 1.01e-24 | 33 |
neuroblast | 1.01e-24 | 33 |
electrically signaling cell | 1.01e-24 | 33 |
electrically responsive cell | 1.04e-20 | 39 |
electrically active cell | 1.04e-20 | 39 |
granule cell | 3.93e-19 | 3 |
neuron of the ventral spinal cord | 7.84e-19 | 3 |
neural cell | 1.18e-18 | 43 |
striatum neuron | 2.04e-18 | 3 |
ectodermal cell | 3.37e-18 | 44 |
neurectodermal cell | 3.37e-18 | 44 |
neuron of the dorsal spinal cord | 8.36e-13 | 2 |
embryonic cell | 6.80e-11 | 70 |
somatic stem cell | 5.10e-08 | 91 |
multi fate stem cell | 5.10e-08 | 91 |
stem cell | 2.01e-07 | 97 |
Ontology term | p-value | n |
---|---|---|
regional part of spinal cord | 5.82e-30 | 5 |
gray matter of spinal cord | 5.82e-30 | 5 |
spinal cord | 5.55e-25 | 6 |
dorsal region element | 5.55e-25 | 6 |
dorsum | 5.55e-25 | 6 |
ventral horn of spinal cord | 7.84e-19 | 3 |
gray matter | 3.75e-13 | 34 |
dorsal horn of spinal cord | 8.36e-13 | 2 |
posterior neural tube | 1.73e-12 | 12 |
chordal neural plate | 1.73e-12 | 12 |
basal ganglion | 5.75e-12 | 8 |
nuclear complex of neuraxis | 5.75e-12 | 8 |
aggregate regional part of brain | 5.75e-12 | 8 |
collection of basal ganglia | 5.75e-12 | 8 |
cerebral subcortex | 5.75e-12 | 8 |
corpus striatum | 2.72e-11 | 5 |
striatum | 2.72e-11 | 5 |
ventral part of telencephalon | 2.72e-11 | 5 |
future corpus striatum | 2.72e-11 | 5 |
central nervous system | 2.20e-10 | 73 |
nervous system | 4.58e-10 | 75 |
neural tube | 3.08e-08 | 52 |
neural rod | 3.08e-08 | 52 |
future spinal cord | 3.08e-08 | 52 |
neural keel | 3.08e-08 | 52 |
regional part of nervous system | 6.82e-08 | 54 |
ectoderm-derived structure | 1.30e-07 | 95 |
ectoderm | 1.30e-07 | 95 |
presumptive ectoderm | 1.30e-07 | 95 |
cavitated compound organ | 4.33e-07 | 21 |