Personal tools

FF:11263-116G3: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008109
|DRA_sample_Accession=CAGE@DRS008109
|accession_numbers=CAGE;DRX008217;DRR009089;DRZ000514;DRZ001899
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0004573,UBERON:0000487,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001917,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0004573,UBERON:0000487,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001917,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413,CL:0002544
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413,CL:0002544
Line 42: Line 43:
|is_a=EFO:0002091;;FF:0000048
|is_a=EFO:0002091;;FF:0000048
|is_obsolete=
|is_obsolete=
|library_id=CNhs12495
|library_ids=CNhs12495
|library_ids=CNhs12495
|name=Endothelial Cells - Aortic, donor1
|name=Endothelial Cells - Aortic, donor1
Line 87: Line 89:
|top_motifs=SOX{8,9,10}:1.19960140215;TLX1..3_NFIC{dimer}:1.19829457111;ALX1:0.937440628978;TFAP4:0.929898769009;GATA6:0.887990098019;RXR{A,B,G}:0.877390966627;PAX1,9:0.833508220383;HOX{A5,B5}:0.786468643182;AR:0.768668275222;ADNP_IRX_SIX_ZHX:0.754453913129;HAND1,2:0.748306806387;LHX3,4:0.741138866828;IKZF1:0.726244531357;ZNF148:0.69556975679;SOX2:0.688980738845;bHLH_family:0.682063377376;NANOG:0.638532175601;NFATC1..3:0.618141644739;CRX:0.611503473191;LEF1_TCF7_TCF7L1,2:0.608665520812;SOX17:0.598307071732;PAX6:0.577112696403;TBP:0.569902668403;GTF2A1,2:0.561212077614;ZNF238:0.542153939241;ETS1,2:0.541926243964;ELF1,2,4:0.517163937835;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.421856746026;GFI1:0.403203297994;POU3F1..4:0.40086166721;TFAP2{A,C}:0.379492722103;POU2F1..3:0.378786787936;PBX1:0.372534754373;TP53:0.365442566825;SPIB:0.347971340455;POU1F1:0.345967822146;TFDP1:0.328373038604;HIC1:0.320288840617;NFE2L1:0.284324309713;FOS_FOS{B,L1}_JUN{B,D}:0.276889578933;GZF1:0.259095330456;ESRRA:0.253232981467;SOX5:0.240908869184;RORA:0.233208276944;BACH2:0.229540282779;ZNF423:0.225573766323;REST:0.217749574651;NFE2L2:0.215335112985;GFI1B:0.171033335716;HNF4A_NR2F1,2:0.163530851403;NFE2:0.157795646354;NR3C1:0.155060926324;FOSL2:0.150804733561;ONECUT1,2:0.145655013821;TEAD1:0.130743905268;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.124354620424;PPARG:0.117143366891;TFAP2B:0.112827266303;SP1:0.110934921754;PRRX1,2:0.0988850424232;RBPJ:0.0774883002544;PAX8:0.0549121120708;CDC5L:0.0369795829332;NR5A1,2:0.0173558076967;FOXM1:-0.00763436260662;ZBTB6:-0.0186844595081;MTE{core}:-0.0324462803252;IKZF2:-0.0473470720574;NFIX:-0.0579653210118;SRF:-0.0615651689877;XCPE1{core}:-0.0622108906383;ARID5B:-0.0745302161134;EN1,2:-0.0767437274893;STAT5{A,B}:-0.0869531056799;E2F1..5:-0.0940368087616;HNF1A:-0.0951606157445;ZFP161:-0.0986841566806;MEF2{A,B,C,D}:-0.0996341994334;ATF2:-0.101640659961;VSX1,2:-0.104592181835;NKX2-3_NKX2-5:-0.108001511276;POU6F1:-0.117718388891;LMO2:-0.124785769086;NHLH1,2:-0.136379501566;HBP1_HMGB_SSRP1_UBTF:-0.136902557009;HLF:-0.139413871408;GLI1..3:-0.139829784722;SPZ1:-0.148957588518;TFCP2:-0.155610936755;FOXD3:-0.157436647851;MYOD1:-0.162977670601;MTF1:-0.178787738687;SPI1:-0.188018164317;HOX{A6,A7,B6,B7}:-0.189818576223;GATA4:-0.190034131153;GTF2I:-0.191938483284;XBP1:-0.200079151837;TAL1_TCF{3,4,12}:-0.201613068061;HES1:-0.21026832569;MED-1{core}:-0.213221159185;NFY{A,B,C}:-0.232205440492;NKX3-2:-0.240570939044;YY1:-0.246239596629;CEBPA,B_DDIT3:-0.275847502395;SMAD1..7,9:-0.280808411425;TGIF1:-0.284086321374;MYB:-0.287043935734;JUN:-0.294553928919;UFEwm:-0.296215108225;GCM1,2:-0.304231809752;FOXQ1:-0.307585167838;HMGA1,2:-0.313540412465;FOXA2:-0.315707758459;ZNF143:-0.320494409157;RXRA_VDR{dimer}:-0.321102701016;RREB1:-0.333906963388;EGR1..3:-0.334421044076;RFX1:-0.350659800248;NKX2-2,8:-0.350878225195;PITX1..3:-0.377503231216;PAX3,7:-0.383307800388;STAT2,4,6:-0.393494635782;CUX2:-0.398265002318;EBF1:-0.401989569417;NRF1:-0.411513674776;MZF1:-0.417671673727;PATZ1:-0.427554696603;TOPORS:-0.429816570577;FOX{F1,F2,J1}:-0.437521061263;NFKB1_REL_RELA:-0.438415843774;OCT4_SOX2{dimer}:-0.445637925953;MAZ:-0.44974013321;FOX{I1,J2}:-0.450164322737;PAX2:-0.463627816728;HOXA9_MEIS1:-0.464547905324;RUNX1..3:-0.49752941206;MYBL2:-0.511425764236;FOXL1:-0.511953647651;HMX1:-0.513026504556;PAX5:-0.527023635641;DMAP1_NCOR{1,2}_SMARC:-0.527649012835;PRDM1:-0.532918931134;NANOG{mouse}:-0.565886350235;KLF4:-0.569141530985;CREB1:-0.584773530305;MYFfamily:-0.603179910608;ATF6:-0.606940679383;AHR_ARNT_ARNT2:-0.640138674921;ZNF384:-0.651194877103;ELK1,4_GABP{A,B1}:-0.660676563568;ALX4:-0.663385357367;BREu{core}:-0.670014550256;EVI1:-0.682622838552;SNAI1..3:-0.686670712263;TLX2:-0.704400577247;IRF1,2:-0.717263047681;POU5F1:-0.718113863088;TEF:-0.727992653235;HOX{A4,D4}:-0.736242193639;IRF7:-0.740201531248;BPTF:-0.741927125794;FOX{D1,D2}:-0.755281125391;ZIC1..3:-0.757095297219;PDX1:-0.769223987216;HIF1A:-0.787314582206;HSF1,2:-0.792748097269;TBX4,5:-0.803536997179;NFIL3:-0.809940080449;SREBF1,2:-0.821433110402;NR1H4:-0.849622809606;MAFB:-0.849671098042;ZEB1:-0.866966308767;NKX3-1:-0.880789516307;FOXP3:-0.890113062605;EP300:-0.900502164059;NR6A1:-0.92393926117;FOXN1:-0.924005914084;ZBTB16:-0.9280392473;ESR1:-0.942925905697;RFX2..5_RFXANK_RFXAP:-1.01256294381;PAX4:-1.05149040319;FOXO1,3,4:-1.07660005964;ATF5_CREB3:-1.10047142511;AIRE:-1.14042522948;T:-1.1454214609;DBP:-1.16928180208;NKX2-1,4:-1.28673912524;ATF4:-1.3202413384;STAT1,3:-1.48601536514;FOXP1:-1.52668632593;NKX6-1,2:-1.61013734671;CDX1,2,4:-1.63321872262
|top_motifs=SOX{8,9,10}:1.19960140215;TLX1..3_NFIC{dimer}:1.19829457111;ALX1:0.937440628978;TFAP4:0.929898769009;GATA6:0.887990098019;RXR{A,B,G}:0.877390966627;PAX1,9:0.833508220383;HOX{A5,B5}:0.786468643182;AR:0.768668275222;ADNP_IRX_SIX_ZHX:0.754453913129;HAND1,2:0.748306806387;LHX3,4:0.741138866828;IKZF1:0.726244531357;ZNF148:0.69556975679;SOX2:0.688980738845;bHLH_family:0.682063377376;NANOG:0.638532175601;NFATC1..3:0.618141644739;CRX:0.611503473191;LEF1_TCF7_TCF7L1,2:0.608665520812;SOX17:0.598307071732;PAX6:0.577112696403;TBP:0.569902668403;GTF2A1,2:0.561212077614;ZNF238:0.542153939241;ETS1,2:0.541926243964;ELF1,2,4:0.517163937835;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.421856746026;GFI1:0.403203297994;POU3F1..4:0.40086166721;TFAP2{A,C}:0.379492722103;POU2F1..3:0.378786787936;PBX1:0.372534754373;TP53:0.365442566825;SPIB:0.347971340455;POU1F1:0.345967822146;TFDP1:0.328373038604;HIC1:0.320288840617;NFE2L1:0.284324309713;FOS_FOS{B,L1}_JUN{B,D}:0.276889578933;GZF1:0.259095330456;ESRRA:0.253232981467;SOX5:0.240908869184;RORA:0.233208276944;BACH2:0.229540282779;ZNF423:0.225573766323;REST:0.217749574651;NFE2L2:0.215335112985;GFI1B:0.171033335716;HNF4A_NR2F1,2:0.163530851403;NFE2:0.157795646354;NR3C1:0.155060926324;FOSL2:0.150804733561;ONECUT1,2:0.145655013821;TEAD1:0.130743905268;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.124354620424;PPARG:0.117143366891;TFAP2B:0.112827266303;SP1:0.110934921754;PRRX1,2:0.0988850424232;RBPJ:0.0774883002544;PAX8:0.0549121120708;CDC5L:0.0369795829332;NR5A1,2:0.0173558076967;FOXM1:-0.00763436260662;ZBTB6:-0.0186844595081;MTE{core}:-0.0324462803252;IKZF2:-0.0473470720574;NFIX:-0.0579653210118;SRF:-0.0615651689877;XCPE1{core}:-0.0622108906383;ARID5B:-0.0745302161134;EN1,2:-0.0767437274893;STAT5{A,B}:-0.0869531056799;E2F1..5:-0.0940368087616;HNF1A:-0.0951606157445;ZFP161:-0.0986841566806;MEF2{A,B,C,D}:-0.0996341994334;ATF2:-0.101640659961;VSX1,2:-0.104592181835;NKX2-3_NKX2-5:-0.108001511276;POU6F1:-0.117718388891;LMO2:-0.124785769086;NHLH1,2:-0.136379501566;HBP1_HMGB_SSRP1_UBTF:-0.136902557009;HLF:-0.139413871408;GLI1..3:-0.139829784722;SPZ1:-0.148957588518;TFCP2:-0.155610936755;FOXD3:-0.157436647851;MYOD1:-0.162977670601;MTF1:-0.178787738687;SPI1:-0.188018164317;HOX{A6,A7,B6,B7}:-0.189818576223;GATA4:-0.190034131153;GTF2I:-0.191938483284;XBP1:-0.200079151837;TAL1_TCF{3,4,12}:-0.201613068061;HES1:-0.21026832569;MED-1{core}:-0.213221159185;NFY{A,B,C}:-0.232205440492;NKX3-2:-0.240570939044;YY1:-0.246239596629;CEBPA,B_DDIT3:-0.275847502395;SMAD1..7,9:-0.280808411425;TGIF1:-0.284086321374;MYB:-0.287043935734;JUN:-0.294553928919;UFEwm:-0.296215108225;GCM1,2:-0.304231809752;FOXQ1:-0.307585167838;HMGA1,2:-0.313540412465;FOXA2:-0.315707758459;ZNF143:-0.320494409157;RXRA_VDR{dimer}:-0.321102701016;RREB1:-0.333906963388;EGR1..3:-0.334421044076;RFX1:-0.350659800248;NKX2-2,8:-0.350878225195;PITX1..3:-0.377503231216;PAX3,7:-0.383307800388;STAT2,4,6:-0.393494635782;CUX2:-0.398265002318;EBF1:-0.401989569417;NRF1:-0.411513674776;MZF1:-0.417671673727;PATZ1:-0.427554696603;TOPORS:-0.429816570577;FOX{F1,F2,J1}:-0.437521061263;NFKB1_REL_RELA:-0.438415843774;OCT4_SOX2{dimer}:-0.445637925953;MAZ:-0.44974013321;FOX{I1,J2}:-0.450164322737;PAX2:-0.463627816728;HOXA9_MEIS1:-0.464547905324;RUNX1..3:-0.49752941206;MYBL2:-0.511425764236;FOXL1:-0.511953647651;HMX1:-0.513026504556;PAX5:-0.527023635641;DMAP1_NCOR{1,2}_SMARC:-0.527649012835;PRDM1:-0.532918931134;NANOG{mouse}:-0.565886350235;KLF4:-0.569141530985;CREB1:-0.584773530305;MYFfamily:-0.603179910608;ATF6:-0.606940679383;AHR_ARNT_ARNT2:-0.640138674921;ZNF384:-0.651194877103;ELK1,4_GABP{A,B1}:-0.660676563568;ALX4:-0.663385357367;BREu{core}:-0.670014550256;EVI1:-0.682622838552;SNAI1..3:-0.686670712263;TLX2:-0.704400577247;IRF1,2:-0.717263047681;POU5F1:-0.718113863088;TEF:-0.727992653235;HOX{A4,D4}:-0.736242193639;IRF7:-0.740201531248;BPTF:-0.741927125794;FOX{D1,D2}:-0.755281125391;ZIC1..3:-0.757095297219;PDX1:-0.769223987216;HIF1A:-0.787314582206;HSF1,2:-0.792748097269;TBX4,5:-0.803536997179;NFIL3:-0.809940080449;SREBF1,2:-0.821433110402;NR1H4:-0.849622809606;MAFB:-0.849671098042;ZEB1:-0.866966308767;NKX3-1:-0.880789516307;FOXP3:-0.890113062605;EP300:-0.900502164059;NR6A1:-0.92393926117;FOXN1:-0.924005914084;ZBTB16:-0.9280392473;ESR1:-0.942925905697;RFX2..5_RFXANK_RFXAP:-1.01256294381;PAX4:-1.05149040319;FOXO1,3,4:-1.07660005964;ATF5_CREB3:-1.10047142511;AIRE:-1.14042522948;T:-1.1454214609;DBP:-1.16928180208;NKX2-1,4:-1.28673912524;ATF4:-1.3202413384;STAT1,3:-1.48601536514;FOXP1:-1.52668632593;NKX6-1,2:-1.61013734671;CDX1,2,4:-1.63321872262
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS008109
|accession_numbers=DRX008217;DRR009089;DRZ000514;DRZ001899;CAGE
|library_id=CNhs12495
}}
}}

Revision as of 19:00, 17 October 2013


Name:Endothelial Cells - Aortic, donor1
Species:Human (Homo sapiens)
Library ID:CNhs12495
Sample type:primary cells
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueaorta
dev stage28 years old adult
sexfemale
age28
cell typeblood vessel endothelial cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1151
catalog numberCA304-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS008109
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12495 CAGE DRX008217 DRR009089
Accession ID Hg19

Library idBAMCTSS
CNhs12495 DRZ000514 DRZ001899
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.361
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.00281
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen1.037
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.27
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0408
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.317
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.276
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.229
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.218
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.5
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.215
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.27
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.554
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12495

Jaspar motifP-value
MA0002.20.714
MA0003.10.35
MA0004.10.494
MA0006.10.198
MA0007.10.0161
MA0009.10.364
MA0014.10.511
MA0017.10.0173
MA0018.27.78285e-6
MA0019.10.696
MA0024.10.44
MA0025.10.0705
MA0027.10.73
MA0028.10.335
MA0029.10.841
MA0030.10.607
MA0031.10.152
MA0035.20.00821
MA0038.10.414
MA0039.20.228
MA0040.10.33
MA0041.10.229
MA0042.10.524
MA0043.12.71198e-8
MA0046.10.38
MA0047.20.516
MA0048.10.716
MA0050.12.75888e-4
MA0051.10.237
MA0052.10.519
MA0055.10.0576
MA0057.10.174
MA0058.10.548
MA0059.10.16
MA0060.10.127
MA0061.10.458
MA0062.20.0251
MA0065.20.298
MA0066.10.5
MA0067.10.032
MA0068.10.676
MA0069.10.206
MA0070.10.572
MA0071.10.581
MA0072.10.906
MA0073.10.632
MA0074.10.753
MA0076.10.0219
MA0077.10.00127
MA0078.10.0177
MA0079.20.97
MA0080.20.0314
MA0081.10.0821
MA0083.10.11
MA0084.10.503
MA0087.10.573
MA0088.10.494
MA0090.10.185
MA0091.10.276
MA0092.10.227
MA0093.10.515
MA0099.26.53654e-14
MA0100.10.282
MA0101.10.683
MA0102.27.963e-4
MA0103.10.238
MA0104.20.647
MA0105.10.81
MA0106.10.00168
MA0107.10.581
MA0108.20.00304
MA0111.10.729
MA0112.20.269
MA0113.10.23
MA0114.10.59
MA0115.10.702
MA0116.10.66
MA0117.10.323
MA0119.10.00967
MA0122.10.152
MA0124.10.681
MA0125.10.966
MA0131.10.601
MA0135.10.332
MA0136.10.0368
MA0137.20.068
MA0138.20.812
MA0139.10.277
MA0140.10.016
MA0141.10.0455
MA0142.10.0729
MA0143.10.748
MA0144.10.788
MA0145.10.213
MA0146.10.962
MA0147.10.698
MA0148.10.18
MA0149.10.0282
MA0150.10.00535
MA0152.10.961
MA0153.10.738
MA0154.10.651
MA0155.10.0592
MA0156.10.139
MA0157.10.568
MA0159.10.417
MA0160.10.183
MA0162.10.0526
MA0163.10.461
MA0164.10.99
MA0258.10.402
MA0259.10.974



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12495

Novel motifP-value
10.433
100.738
1000.624
1010.176
1020.532
1030.641
1040.825
1050.882
1060.122
1070.0322
1080.51
1090.019
110.0414
1100.0143
1110.456
1120.833
1130.533
1140.218
1150.13
1160.686
1170.953
1180.83
1190.131
120.353
1200.0228
1210.934
1220.678
1230.0404
1240.377
1250.323
1260.941
1270.172
1280.526
1290.0489
130.312
1300.587
1310.961
1320.84
1330.99
1340.789
1350.19
1360.65
1370.211
1380.48
1390.553
140.795
1400.563
1410.479
1420.769
1430.0117
1440.597
1450.144
1460.266
1470.0222
1480.619
1490.0496
150.311
1500.293
1510.689
1520.0365
1530.438
1540.86
1550.274
1560.717
1570.214
1580.603
1590.701
160.494
1600.0073
1610.815
1620.54
1630.6
1640.853
1650.892
1660.709
1670.286
1680.0783
1690.0555
170.185
180.471
190.0886
20.591
200.892
210.515
220.145
230.161
240.387
250.647
260.563
270.219
280.104
290.688
30.711
300.364
310.719
320.54
330.122
340.206
350.641
360.112
370.312
380.164
390.412
40.427
400.0122
410.12
420.459
430.276
440.747
450.24
460.136
470.286
480.0556
490.395
50.659
500.672
510.621
520.788
530.547
540.857
550.931
560.531
570.128
580.426
590.211
60.344
600.538
610.596
620.951
630.226
640.494
650.138
660.134
670.762
680.0323
690.565
70.646
700.597
710.819
720.353
730.00496
740.531
750.611
760.433
770.211
780.46
790.572
80.00934
800.303
810.706
820.661
830.768
840.0663
850.346
860.79
870.152
880.55
890.205
90.209
900.12
910.497
920.405
930.49
940.966
950.118
960.143
970.681
980.179
990.00773



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12495


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
1000413 (endothelial cell of artery)
0002544 (aortic endothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0004573 (systemic artery)
0000487 (simple squamous epithelium)
0003509 (arterial blood vessel)
0004638 (blood vessel endothelium)
0003915 (endothelial tube)
0004700 (arterial system endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001917 (endothelium of artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000047 (human endothelial cell of the artery sample)
0000048 (human endothelial cell of the aorta sample)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:11263-116G3&oldid=3078813"