Personal tools

FF:12740-135I4: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 90: Line 90:
|sample_tissue=aorta
|sample_tissue=aorta
|time= 00hr00min
|time= 00hr00min
|timecourse=human_Aortic_smooth_muscle_cell_FGF2
|timecourse=AoSMC_response_to_FGF2
|top_motifs=ALX4:2.44649173195;NKX3-1:1.93166548011;NKX2-2,8:1.78780914258;UFEwm:1.64412787195;GCM1,2:1.44835697907;FOXL1:1.35444619776;TP53:1.33375881818;ALX1:1.27575584607;ONECUT1,2:1.24897387466;NFE2L1:1.23846407354;EVI1:1.13445391152;ZNF238:1.12014529483;ZBTB6:1.10521953668;NKX3-2:1.10112217827;XBP1:1.0872415054;TEF:1.0390037742;POU1F1:0.996843077917;PAX4:0.951948254909;SRF:0.947982927138;PAX1,9:0.947264625064;CDC5L:0.908896892195;HOX{A5,B5}:0.908074572404;AIRE:0.810504725621;KLF4:0.795649106406;ZIC1..3:0.795206638599;HSF1,2:0.789315280345;TAL1_TCF{3,4,12}:0.768257027725;HMGA1,2:0.761896379182;TLX1..3_NFIC{dimer}:0.700824339507;POU6F1:0.676664011677;RXR{A,B,G}:0.663510286359;HOX{A4,D4}:0.644274185951;MYBL2:0.632924101305;EN1,2:0.629992474602;NFATC1..3:0.629181593329;PPARG:0.620374648816;NANOG{mouse}:0.616912117282;PAX8:0.609370994001;POU3F1..4:0.607270476217;GATA4:0.600855235733;GZF1:0.593630059376;TEAD1:0.562013419765;TBP:0.521992691882;NFE2L2:0.518563366339;TFAP4:0.513314272756;ZNF384:0.51279206319;FOXM1:0.501877760224;GLI1..3:0.490368016374;EBF1:0.473795257525;HMX1:0.46608203057;NKX6-1,2:0.421404191579;HIF1A:0.39849257665;ATF6:0.39749527275;FOXD3:0.385448373685;FOX{I1,J2}:0.363201152965;BACH2:0.338808470033;CDX1,2,4:0.2888259724;bHLH_family:0.284095411663;LHX3,4:0.254094953882;NR3C1:0.244691947733;ZBTB16:0.240589424291;TLX2:0.239631074477;DBP:0.234612395956;HES1:0.230232743746;TFCP2:0.229713396282;PAX5:0.226950072329;FOXP3:0.217303836292;SOX2:0.21704842881;BPTF:0.214931156785;MZF1:0.20480751788;NFIX:0.192324482183;JUN:0.192292955912;IKZF1:0.168646773278;SOX17:0.167418856543;GTF2I:0.161051294968;PRDM1:0.158002473289;GTF2A1,2:0.157353940965;TBX4,5:0.142917305484;FOS_FOS{B,L1}_JUN{B,D}:0.119450168436;REST:0.110887595197;FOXQ1:0.11008364153;GFI1B:0.108448845592;HLF:0.0898071455433;IKZF2:0.0710846767837;CRX:0.0562801855551;HBP1_HMGB_SSRP1_UBTF:0.0401855795481;HOXA9_MEIS1:0.0142450151026;SOX5:0.0123445904221;NFKB1_REL_RELA:0.00755049752127;LEF1_TCF7_TCF7L1,2:0.00240695221678;MAFB:-0.00623533781646;FOSL2:-0.0100110335681;PAX6:-0.0338261659164;SPZ1:-0.0649959198531;MTE{core}:-0.0703704122096;HAND1,2:-0.0740397008144;AHR_ARNT_ARNT2:-0.088012099164;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.090344576066;HNF1A:-0.11763858065;RUNX1..3:-0.119245935432;PATZ1:-0.184713362822;TFAP2{A,C}:-0.200149973775;PITX1..3:-0.206650924389;MYB:-0.209204606539;NKX2-1,4:-0.214957367823;MEF2{A,B,C,D}:-0.217122006082;YY1:-0.225018971627;NFE2:-0.235021170413;MYFfamily:-0.237597719176;ELK1,4_GABP{A,B1}:-0.24385941743;ELF1,2,4:-0.24639900841;STAT5{A,B}:-0.271305315742;SMAD1..7,9:-0.274516461468;TOPORS:-0.281221387175;ESR1:-0.287330130394;STAT2,4,6:-0.297911059857;MED-1{core}:-0.298598284974;ADNP_IRX_SIX_ZHX:-0.300605393113;SOX{8,9,10}:-0.300761237716;FOX{D1,D2}:-0.301658778535;AR:-0.302977852724;ETS1,2:-0.306036690584;NFIL3:-0.312588321306;ARID5B:-0.321678575739;SPI1:-0.326050894289;RREB1:-0.326762225993;MAZ:-0.351009159308;OCT4_SOX2{dimer}:-0.353155539779;RFX1:-0.362876158397;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.368608841053;TFAP2B:-0.381729308679;POU5F1:-0.386146145599;HNF4A_NR2F1,2:-0.402629972554;CEBPA,B_DDIT3:-0.404520884196;DMAP1_NCOR{1,2}_SMARC:-0.415236271069;RXRA_VDR{dimer}:-0.421490499276;PRRX1,2:-0.431496674493;HIC1:-0.440126272346;POU2F1..3:-0.449216695339;NR6A1:-0.468607003628;NRF1:-0.475366774488;ZNF143:-0.475526804386;NR1H4:-0.490405591192;ZFP161:-0.502332144734;NHLH1,2:-0.502441306928;PAX2:-0.517929149217;SPIB:-0.518935022956;MTF1:-0.520845242541;ESRRA:-0.544992787671;SNAI1..3:-0.558762582073;ATF5_CREB3:-0.558810946679;IRF1,2:-0.568058294491;TGIF1:-0.574926944032;ZNF148:-0.585275274105;HOX{A6,A7,B6,B7}:-0.601935974538;LMO2:-0.618713480137;ZEB1:-0.638494317078;E2F1..5:-0.657105095741;GFI1:-0.66155048654;XCPE1{core}:-0.673719809009;FOXP1:-0.677700796338;RFX2..5_RFXANK_RFXAP:-0.699415694171;T:-0.701613775369;FOXO1,3,4:-0.711780944919;ZNF423:-0.745995696146;GATA6:-0.758106860094;CUX2:-0.763642658218;CREB1:-0.782113995182;IRF7:-0.824977059906;NKX2-3_NKX2-5:-0.84724561134;SREBF1,2:-0.850559602711;ATF2:-0.850646683573;VSX1,2:-0.861989242716;TFDP1:-0.865058800869;EGR1..3:-0.872074022411;MYOD1:-0.876479859956;PBX1:-0.915241941346;FOX{F1,F2,J1}:-0.924540199271;STAT1,3:-0.926761714852;SP1:-0.957309366703;FOXN1:-0.973457034106;NR5A1,2:-1.0030881702;ATF4:-1.00609105649;PDX1:-1.03407429451;FOXA2:-1.07918920484;RBPJ:-1.10570485406;PAX3,7:-1.16775709443;NFY{A,B,C}:-1.22755076639;BREu{core}:-1.25590848879;NANOG:-1.29102775175;EP300:-1.38166149709;RORA:-1.46528356053
|top_motifs=ALX4:2.44649173195;NKX3-1:1.93166548011;NKX2-2,8:1.78780914258;UFEwm:1.64412787195;GCM1,2:1.44835697907;FOXL1:1.35444619776;TP53:1.33375881818;ALX1:1.27575584607;ONECUT1,2:1.24897387466;NFE2L1:1.23846407354;EVI1:1.13445391152;ZNF238:1.12014529483;ZBTB6:1.10521953668;NKX3-2:1.10112217827;XBP1:1.0872415054;TEF:1.0390037742;POU1F1:0.996843077917;PAX4:0.951948254909;SRF:0.947982927138;PAX1,9:0.947264625064;CDC5L:0.908896892195;HOX{A5,B5}:0.908074572404;AIRE:0.810504725621;KLF4:0.795649106406;ZIC1..3:0.795206638599;HSF1,2:0.789315280345;TAL1_TCF{3,4,12}:0.768257027725;HMGA1,2:0.761896379182;TLX1..3_NFIC{dimer}:0.700824339507;POU6F1:0.676664011677;RXR{A,B,G}:0.663510286359;HOX{A4,D4}:0.644274185951;MYBL2:0.632924101305;EN1,2:0.629992474602;NFATC1..3:0.629181593329;PPARG:0.620374648816;NANOG{mouse}:0.616912117282;PAX8:0.609370994001;POU3F1..4:0.607270476217;GATA4:0.600855235733;GZF1:0.593630059376;TEAD1:0.562013419765;TBP:0.521992691882;NFE2L2:0.518563366339;TFAP4:0.513314272756;ZNF384:0.51279206319;FOXM1:0.501877760224;GLI1..3:0.490368016374;EBF1:0.473795257525;HMX1:0.46608203057;NKX6-1,2:0.421404191579;HIF1A:0.39849257665;ATF6:0.39749527275;FOXD3:0.385448373685;FOX{I1,J2}:0.363201152965;BACH2:0.338808470033;CDX1,2,4:0.2888259724;bHLH_family:0.284095411663;LHX3,4:0.254094953882;NR3C1:0.244691947733;ZBTB16:0.240589424291;TLX2:0.239631074477;DBP:0.234612395956;HES1:0.230232743746;TFCP2:0.229713396282;PAX5:0.226950072329;FOXP3:0.217303836292;SOX2:0.21704842881;BPTF:0.214931156785;MZF1:0.20480751788;NFIX:0.192324482183;JUN:0.192292955912;IKZF1:0.168646773278;SOX17:0.167418856543;GTF2I:0.161051294968;PRDM1:0.158002473289;GTF2A1,2:0.157353940965;TBX4,5:0.142917305484;FOS_FOS{B,L1}_JUN{B,D}:0.119450168436;REST:0.110887595197;FOXQ1:0.11008364153;GFI1B:0.108448845592;HLF:0.0898071455433;IKZF2:0.0710846767837;CRX:0.0562801855551;HBP1_HMGB_SSRP1_UBTF:0.0401855795481;HOXA9_MEIS1:0.0142450151026;SOX5:0.0123445904221;NFKB1_REL_RELA:0.00755049752127;LEF1_TCF7_TCF7L1,2:0.00240695221678;MAFB:-0.00623533781646;FOSL2:-0.0100110335681;PAX6:-0.0338261659164;SPZ1:-0.0649959198531;MTE{core}:-0.0703704122096;HAND1,2:-0.0740397008144;AHR_ARNT_ARNT2:-0.088012099164;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.090344576066;HNF1A:-0.11763858065;RUNX1..3:-0.119245935432;PATZ1:-0.184713362822;TFAP2{A,C}:-0.200149973775;PITX1..3:-0.206650924389;MYB:-0.209204606539;NKX2-1,4:-0.214957367823;MEF2{A,B,C,D}:-0.217122006082;YY1:-0.225018971627;NFE2:-0.235021170413;MYFfamily:-0.237597719176;ELK1,4_GABP{A,B1}:-0.24385941743;ELF1,2,4:-0.24639900841;STAT5{A,B}:-0.271305315742;SMAD1..7,9:-0.274516461468;TOPORS:-0.281221387175;ESR1:-0.287330130394;STAT2,4,6:-0.297911059857;MED-1{core}:-0.298598284974;ADNP_IRX_SIX_ZHX:-0.300605393113;SOX{8,9,10}:-0.300761237716;FOX{D1,D2}:-0.301658778535;AR:-0.302977852724;ETS1,2:-0.306036690584;NFIL3:-0.312588321306;ARID5B:-0.321678575739;SPI1:-0.326050894289;RREB1:-0.326762225993;MAZ:-0.351009159308;OCT4_SOX2{dimer}:-0.353155539779;RFX1:-0.362876158397;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.368608841053;TFAP2B:-0.381729308679;POU5F1:-0.386146145599;HNF4A_NR2F1,2:-0.402629972554;CEBPA,B_DDIT3:-0.404520884196;DMAP1_NCOR{1,2}_SMARC:-0.415236271069;RXRA_VDR{dimer}:-0.421490499276;PRRX1,2:-0.431496674493;HIC1:-0.440126272346;POU2F1..3:-0.449216695339;NR6A1:-0.468607003628;NRF1:-0.475366774488;ZNF143:-0.475526804386;NR1H4:-0.490405591192;ZFP161:-0.502332144734;NHLH1,2:-0.502441306928;PAX2:-0.517929149217;SPIB:-0.518935022956;MTF1:-0.520845242541;ESRRA:-0.544992787671;SNAI1..3:-0.558762582073;ATF5_CREB3:-0.558810946679;IRF1,2:-0.568058294491;TGIF1:-0.574926944032;ZNF148:-0.585275274105;HOX{A6,A7,B6,B7}:-0.601935974538;LMO2:-0.618713480137;ZEB1:-0.638494317078;E2F1..5:-0.657105095741;GFI1:-0.66155048654;XCPE1{core}:-0.673719809009;FOXP1:-0.677700796338;RFX2..5_RFXANK_RFXAP:-0.699415694171;T:-0.701613775369;FOXO1,3,4:-0.711780944919;ZNF423:-0.745995696146;GATA6:-0.758106860094;CUX2:-0.763642658218;CREB1:-0.782113995182;IRF7:-0.824977059906;NKX2-3_NKX2-5:-0.84724561134;SREBF1,2:-0.850559602711;ATF2:-0.850646683573;VSX1,2:-0.861989242716;TFDP1:-0.865058800869;EGR1..3:-0.872074022411;MYOD1:-0.876479859956;PBX1:-0.915241941346;FOX{F1,F2,J1}:-0.924540199271;STAT1,3:-0.926761714852;SP1:-0.957309366703;FOXN1:-0.973457034106;NR5A1,2:-1.0030881702;ATF4:-1.00609105649;PDX1:-1.03407429451;FOXA2:-1.07918920484;RBPJ:-1.10570485406;PAX3,7:-1.16775709443;NFY{A,B,C}:-1.22755076639;BREu{core}:-1.25590848879;NANOG:-1.29102775175;EP300:-1.38166149709;RORA:-1.46528356053
|xref=
|xref=
}}
}}

Revision as of 15:24, 5 March 2015


Name:Aortic smooth muscle cell response to FGF2
Species:Human (Homo sapiens)
Library ID:CNhs13358
Sample type:time courses
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueaorta
dev stageNA
sexNA
ageNA
cell typesmooth muscle cell, vascular associated
cell lineNA
companyNA
collaborationLevon Khachigian (University of New South Wales)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005336
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13358 CAGE DRX008580 DRR009452
Accession ID Hg19

Library idBAMCTSS
CNhs13358 DRZ000877 DRZ002262
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0955
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.316
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.664
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.202
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.281
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.604
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.107
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.00934
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.306
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.847
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.797
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.312
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.343
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0639
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.533
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.205
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.752
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.916
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.343
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.604
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13358

Jaspar motifP-value
MA0002.20.638
MA0003.10.384
MA0004.10.429
MA0006.10.321
MA0007.10.343
MA0009.10.957
MA0014.10.902
MA0017.10.565
MA0018.22.02711e-5
MA0019.10.903
MA0024.12.4779e-6
MA0025.13.23981e-4
MA0027.10.806
MA0028.10.455
MA0029.10.631
MA0030.10.0148
MA0031.10.204
MA0035.20.158
MA0038.18.17626e-4
MA0039.20.0278
MA0040.10.428
MA0041.10.501
MA0042.10.708
MA0043.16.28585e-6
MA0046.10.0252
MA0047.20.522
MA0048.10.178
MA0050.11.07192e-4
MA0051.10.0468
MA0052.10.0166
MA0055.10.789
MA0057.10.843
MA0058.10.238
MA0059.10.18
MA0060.11.40777e-11
MA0061.10.118
MA0062.20.00171
MA0065.20.333
MA0066.10.0595
MA0067.10.00386
MA0068.10.229
MA0069.10.212
MA0070.10.46
MA0071.10.914
MA0072.10.47
MA0073.10.581
MA0074.10.166
MA0076.10.0554
MA0077.10.0563
MA0078.10.14
MA0079.20.0732
MA0080.26.29001e-5
MA0081.10.073
MA0083.10.0175
MA0084.10.477
MA0087.10.818
MA0088.10.419
MA0090.10.127
MA0091.10.111
MA0092.10.266
MA0093.10.358
MA0099.20.0191
MA0100.10.44
MA0101.10.711
MA0102.20.168
MA0103.10.555
MA0104.20.671
MA0105.19.06963e-5
MA0106.18.3817e-4
MA0107.10.777
MA0108.20.619
MA0111.10.785
MA0112.20.00263
MA0113.10.311
MA0114.10.883
MA0115.10.544
MA0116.10.02
MA0117.10.68
MA0119.10.0788
MA0122.10.832
MA0124.10.533
MA0125.10.33
MA0131.10.203
MA0135.10.0746
MA0136.11.29668e-4
MA0137.20.0448
MA0138.20.124
MA0139.10.208
MA0140.10.631
MA0141.10.346
MA0142.10.909
MA0143.10.167
MA0144.10.798
MA0145.10.315
MA0146.10.906
MA0147.10.996
MA0148.10.948
MA0149.10.152
MA0150.10.883
MA0152.10.0831
MA0153.10.173
MA0154.10.04
MA0155.10.413
MA0156.10.00554
MA0157.10.706
MA0159.10.16
MA0160.10.537
MA0162.10.0617
MA0163.11.22138e-6
MA0164.10.792
MA0258.10.0956
MA0259.10.404



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13358

Novel motifP-value
10.121
100.277
1000.618
1010.993
1020.958
1030.111
1040.691
1050.384
1060.0213
1070.124
1080.324
1090.285
110.0515
1100.0956
1110.0905
1120.116
1130.125
1140.032
1150.174
1160.125
1170.206
1180.475
1190.309
120.909
1200.0229
1210.631
1220.0764
1230.154
1240.787
1250.328
1260.308
1270.903
1280.0701
1290.366
130.486
1300.643
1310.751
1320.729
1330.987
1340.773
1350.312
1360.842
1370.402
1380.766
1390.402
140.866
1400.00286
1410.831
1420.578
1430.0169
1440.176
1450.148
1460.97
1470.263
1480.017
1490.0506
150.221
1500.135
1510.682
1520.0792
1530.838
1540.951
1550.187
1560.986
1570.383
1580.0408
1590.142
160.0451
1600.168
1610.808
1620.371
1630.803
1640.0713
1650.845
1660.407
1670.586
1680.366
1690.0348
170.134
180.108
190.0754
20.479
200.908
210.28
220.461
230.197
240.964
250.448
260.0823
270.313
280.547
290.0596
30.145
300.788
310.31
322.29153e-4
330.482
340.881
350.115
360.731
370.0194
380.697
390.325
40.976
400.704
410.699
420.778
430.179
440.0317
450.698
460.0348
470.23
480.272
490.483
50.42
500.63
510.752
520.702
530.37
540.595
550.338
560.679
570.13
580.914
590.0333
60.615
600.316
610.7
620.375
630.126
640.564
650.268
660.443
670.352
680.541
690.65
70.929
700.0812
710.145
720.725
730.0381
740.00617
750.43
760.581
770.0202
780.369
790.00312
80.0126
800.572
810.214
820.0752
830.976
840.552
850.0495
860.47
870.184
880.168
890.0982
90.499
900.0947
910.54
920.235
930.491
940.236
950.306
960.385
970.803
980.723
990.136



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13358


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000350 (experimentally modified sample)
0000344 (0 minute sample)
0000339 (FGF2 treatment sample)
0000546 (human Aortic Smooth Muscle cells 0min after treatment with FGF2 sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:12740-135I4&oldid=3288954"