FFCP PHASE1:Hg19::chr1:118727781..118727859,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=200162|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=26620|TSSclassifier=S|UniProt=Q6Q759|association_with_transcript=0bp_to_ENST00000336338,ENST00000465053,NM_206996,uc001ehk.2_5end|coexpression_cluster_id=C111|description=CAGE_peak_1_at_SPAG17_5end|id=chr1:118727781..118727859,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0009117;2.52e-12;10!UBERON:0005564;2.52e-12;10!UBERON:0003918;2.26e-07;10!UBERON:0007687;2.26e-07;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:305,6.18e-07,106|ontology_enrichment_uberon=UBERON:0001049!2.67e-17!57;UBERON:0005068!2.67e-17!57;UBERON:0006241!2.67e-17!57;UBERON:0007135!2.67e-17!57;UBERON:0003075!2.07e-15!86;UBERON:0007284!2.07e-15!86;UBERON:0002346!1.31e-14!90;UBERON:0007023!1.78e-14!115;UBERON:0002616!3.11e-14!59;UBERON:0005743!7.80e-14!86;UBERON:0001017!1.08e-13!82;UBERON:0003080!3.09e-12!42;UBERON:0002780!9.55e-12!41;UBERON:0001890!9.55e-12!41;UBERON:0006240!9.55e-12!41;UBERON:0003056!1.85e-11!61;UBERON:0000073!2.03e-11!94;UBERON:0001016!2.03e-11!94;UBERON:0000955!2.35e-11!69;UBERON:0006238!2.35e-11!69;UBERON:0000153!1.01e-10!129;UBERON:0007811!1.01e-10!129;UBERON:0000033!3.25e-10!123;UBERON:0000475!9.78e-10!365;UBERON:0004121!1.00e-09!169;UBERON:0000924!1.99e-09!173;UBERON:0006601!1.99e-09!173;UBERON:0000062!4.62e-08!511;UBERON:0002020!8.10e-08!34;UBERON:0003528!8.10e-08!34;UBERON:0002298!1.70e-07!8;UBERON:0001893!1.72e-07!34;UBERON:0002791!3.39e-07!33;UBERON:0001894!4.86e-07!7;UBERON:0006222!4.86e-07!7;UBERON:0004176!8.34e-07!22|ontology_enrichment_uberon_v019=UBERON:0002298;9.80e-14;6!UBERON:0001894;1.10e-10;7!UBERON:0000369;4.27e-09;4!UBERON:0002435;4.27e-09;4!UBERON:0000204;4.27e-09;4!UBERON:0000073;1.34e-08;53!UBERON:0002616;1.34e-08;53!UBERON:0003135;1.41e-08;11!UBERON:0000125;1.98e-08;9!UBERON:0002308;1.98e-08;9!UBERON:0001896;5.37e-08;3!UBERON:0005290;5.37e-08;3!UBERON:0002780;1.19e-07;41!UBERON:0001890;1.19e-07;41!UBERON:0000988;2.06e-07;3!UBERON:0005383;2.42e-07;3!UBERON:0005382;2.42e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0001049,7.80e-14,56;UBERON:0005068,7.80e-14,56;UBERON:0006241,7.80e-14,56;UBERON:0007135,7.80e-14,56;UBERON:0002298,9.89e-14,6;UBERON:0007023,1.20e-13,114;UBERON:0000073,1.34e-13,53;UBERON:0002616,1.34e-13,53;UBERON:0001894,7.80e-11,7;UBERON:0006222,7.80e-11,7;UBERON:0001017,2.64e-09,81;UBERON:0000369,3.75e-09,4;UBERON:0002435,3.75e-09,4;UBERON:0000204,3.75e-09,4;UBERON:0010082,3.75e-09,4;UBERON:0000955,3.85e-09,68;UBERON:0006238,3.85e-09,68;UBERON:0002780,5.06e-09,41;UBERON:0001890,5.06e-09,41;UBERON:0003080,5.06e-09,41;UBERON:0006240,5.06e-09,41;UBERON:0003135,1.47e-08,11;UBERON:0000125,1.80e-08,9;UBERON:0002308,1.80e-08,9;UBERON:0010371,3.91e-08,104;UBERON:0001896,5.10e-08,3;UBERON:0005290,5.10e-08,3;UBERON:0010096,5.10e-08,3;UBERON:0001016,8.73e-08,89;UBERON:0003075,1.29e-07,82;UBERON:0007284,1.29e-07,82;UBERON:0000988,2.18e-07,3;UBERON:0005383,2.38e-07,3;UBERON:0005382,2.38e-07,3;UBERON:0003133,4.04e-07,48;UBERON:0002346,5.20e-07,86|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0.263766978228454,0.247532705920093,0,0,0,0,0,0.369363174230364,0,0,0.286235987131057,0,0.251085279189606,0,0,0,0,0,0,0.919421224478927,0,0,0,0,0.587200878669695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.289693037921647,0.795285947051099,0.486634870302636,0.378139268656271,0.221729397462564,0.614843499851882,13.228886625269,0,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0.587172493218824,0.161872944368132,0.140450806702248,0,0,0,0,0,0,0,0,0.250237039743928,0,0,0,0.150238058906597,0.113432183160021,0.89694817844431,0,0.211931901159562,0.600182192168805,0.412210116953756,0,0,0.168776332241266,0,0.757301322732344,0.0920498986422993,0.161646056818812,1.42003837006646,0.403008392910561,0.508681776931463,0.386521706326594,1.36373060295417,0,0.487894824518382,0.132529768321485,0.813357600086629,0.932949495138334,0.252320850875628,0,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0.590789906681404,0,0,0.171567810298526,0.329250856225877,1.1240175325762,0.201057944823262,0.648119116109707,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0,1.51183915378974,0.992425680696705,0,0,0,0,0.088048434013226,0,0.144119953416961,0,0,0,0,0,0,0,0,0.224262168690721,0,0,0,0,0,0,0,0.514414748524284,0,0.266422179016099,0,0,0,0,0,0,0.301439377059586,0,0.399891964728228,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,0.24538298343828,0,0.542530047399471,0,0,0,0,0.300946099727719,0,0,0.664225598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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=200162 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26620 | |||
|TSSclassifier=S | |||
|UniProt=Q6Q759 | |||
|association_with_transcript=0bp_to_ENST00000336338,ENST00000465053,NM_206996,uc001ehk.2_5end | |||
|coexpression_cluster_id=C111 | |||
|description=CAGE_peak_1_at_SPAG17_5end | |||
|id=chr1:118727781..118727859,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.52e-12;10!UBERON:0005564;2.52e-12;10!UBERON:0003918;2.26e-07;10!UBERON:0007687;2.26e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.18e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0001049!2.67e-17!57;UBERON:0005068!2.67e-17!57;UBERON:0006241!2.67e-17!57;UBERON:0007135!2.67e-17!57;UBERON:0003075!2.07e-15!86;UBERON:0007284!2.07e-15!86;UBERON:0002346!1.31e-14!90;UBERON:0007023!1.78e-14!115;UBERON:0002616!3.11e-14!59;UBERON:0005743!7.80e-14!86;UBERON:0001017!1.08e-13!82;UBERON:0003080!3.09e-12!42;UBERON:0002780!9.55e-12!41;UBERON:0001890!9.55e-12!41;UBERON:0006240!9.55e-12!41;UBERON:0003056!1.85e-11!61;UBERON:0000073!2.03e-11!94;UBERON:0001016!2.03e-11!94;UBERON:0000955!2.35e-11!69;UBERON:0006238!2.35e-11!69;UBERON:0000153!1.01e-10!129;UBERON:0007811!1.01e-10!129;UBERON:0000033!3.25e-10!123;UBERON:0000475!9.78e-10!365;UBERON:0004121!1.00e-09!169;UBERON:0000924!1.99e-09!173;UBERON:0006601!1.99e-09!173;UBERON:0000062!4.62e-08!511;UBERON:0002020!8.10e-08!34;UBERON:0003528!8.10e-08!34;UBERON:0002298!1.70e-07!8;UBERON:0001893!1.72e-07!34;UBERON:0002791!3.39e-07!33;UBERON:0001894!4.86e-07!7;UBERON:0006222!4.86e-07!7;UBERON:0004176!8.34e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0002298;9.80e-14;6!UBERON:0001894;1.10e-10;7!UBERON:0000369;4.27e-09;4!UBERON:0002435;4.27e-09;4!UBERON:0000204;4.27e-09;4!UBERON:0000073;1.34e-08;53!UBERON:0002616;1.34e-08;53!UBERON:0003135;1.41e-08;11!UBERON:0000125;1.98e-08;9!UBERON:0002308;1.98e-08;9!UBERON:0001896;5.37e-08;3!UBERON:0005290;5.37e-08;3!UBERON:0002780;1.19e-07;41!UBERON:0001890;1.19e-07;41!UBERON:0000988;2.06e-07;3!UBERON:0005383;2.42e-07;3!UBERON:0005382;2.42e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,7.80e-14,56;UBERON:0005068,7.80e-14,56;UBERON:0006241,7.80e-14,56;UBERON:0007135,7.80e-14,56;UBERON:0002298,9.89e-14,6;UBERON:0007023,1.20e-13,114;UBERON:0000073,1.34e-13,53;UBERON:0002616,1.34e-13,53;UBERON:0001894,7.80e-11,7;UBERON:0006222,7.80e-11,7;UBERON:0001017,2.64e-09,81;UBERON:0000369,3.75e-09,4;UBERON:0002435,3.75e-09,4;UBERON:0000204,3.75e-09,4;UBERON:0010082,3.75e-09,4;UBERON:0000955,3.85e-09,68;UBERON:0006238,3.85e-09,68;UBERON:0002780,5.06e-09,41;UBERON:0001890,5.06e-09,41;UBERON:0003080,5.06e-09,41;UBERON:0006240,5.06e-09,41;UBERON:0003135,1.47e-08,11;UBERON:0000125,1.80e-08,9;UBERON:0002308,1.80e-08,9;UBERON:0010371,3.91e-08,104;UBERON:0001896,5.10e-08,3;UBERON:0005290,5.10e-08,3;UBERON:0010096,5.10e-08,3;UBERON:0001016,8.73e-08,89;UBERON:0003075,1.29e-07,82;UBERON:0007284,1.29e-07,82;UBERON:0000988,2.18e-07,3;UBERON:0005383,2.38e-07,3;UBERON:0005382,2.38e-07,3;UBERON:0003133,4.04e-07,48;UBERON:0002346,5.20e-07,86 | |||
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| |||
|short_description=p1@SPAG17 | |||
}} |
Revision as of 23:48, 11 September 2013
Short description: | p1@SPAG17 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SPAG17_5end |
Coexpression cluster: | C111_medulla_lung_trachea_testis_caudate_epididymis_throat |
Association with transcript: | 0bp_to_ENST00000336338, ENST00000465053, NM_206996, uc001ehk.2_5end |
EntrezGene: | SPAG17 |
HGNC: | 26620 |
UniProt: | Q6Q759 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 7.80e-14 | 56 |
neural rod | 7.80e-14 | 56 |
future spinal cord | 7.80e-14 | 56 |
neural keel | 7.80e-14 | 56 |
brainstem | 9.89e-14 | 6 |
adult organism | 1.20e-13 | 114 |
regional part of nervous system | 1.34e-13 | 53 |
regional part of brain | 1.34e-13 | 53 |
diencephalon | 7.80e-11 | 7 |
future diencephalon | 7.80e-11 | 7 |
central nervous system | 2.64e-09 | 81 |
corpus striatum | 3.75e-09 | 4 |
striatum | 3.75e-09 | 4 |
ventral part of telencephalon | 3.75e-09 | 4 |
future corpus striatum | 3.75e-09 | 4 |
brain | 3.85e-09 | 68 |
future brain | 3.85e-09 | 68 |
regional part of forebrain | 5.06e-09 | 41 |
forebrain | 5.06e-09 | 41 |
anterior neural tube | 5.06e-09 | 41 |
future forebrain | 5.06e-09 | 41 |
male reproductive organ | 1.47e-08 | 11 |
neural nucleus | 1.80e-08 | 9 |
nucleus of brain | 1.80e-08 | 9 |
ecto-epithelium | 3.91e-08 | 104 |
medulla oblongata | 5.10e-08 | 3 |
myelencephalon | 5.10e-08 | 3 |
future myelencephalon | 5.10e-08 | 3 |
nervous system | 8.73e-08 | 89 |
neural plate | 1.29e-07 | 82 |
presumptive neural plate | 1.29e-07 | 82 |
pons | 2.18e-07 | 3 |
caudate-putamen | 2.38e-07 | 3 |
dorsal striatum | 2.38e-07 | 3 |
reproductive organ | 4.04e-07 | 48 |
neurectoderm | 5.20e-07 | 86 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.18e-07 | 106 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.