FFCP PHASE1:Hg19::chr20:9495383..9495390,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=24141|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16097|TSSclassifier=W|UniProt=Q9UJQ1|association_with_transcript=112bp_to_ENST00000427562,uc002wni.1,uc010zrc.1_5end|coexpression_cluster_id=C1485|description=CAGE_peak_14_at_LAMP5_5end|id=chr20:9495383..9495390,+|ontology_enrichment_celltype=CL:0000784!7.02e-10!3|ontology_enrichment_celltype_v019=CL:0000784;1.50e-54;3!CL:0000451;1.85e-15;10|ontology_enrichment_celltype_v019_2=CL:0000784,5.41e-54,3;CL:0000451,2.61e-15,10|ontology_enrichment_development_v019=UBERON:0010122;2.48e-10;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:4960;8.94e-20;1!DOID:0070004;8.94e-20;1|ontology_enrichment_disease_v019_2=DOID:4960,8.95e-20,1;DOID:0070004,8.95e-20,1|ontology_enrichment_uberon=UBERON:0001049!1.58e-49!57;UBERON:0005068!1.58e-49!57;UBERON:0006241!1.58e-49!57;UBERON:0007135!1.58e-49!57;UBERON:0002616!1.55e-41!59;UBERON:0001017!1.38e-39!82;UBERON:0005743!2.05e-39!86;UBERON:0000073!3.74e-39!94;UBERON:0001016!3.74e-39!94;UBERON:0002780!5.39e-38!41;UBERON:0001890!5.39e-38!41;UBERON:0006240!5.39e-38!41;UBERON:0003075!1.13e-37!86;UBERON:0007284!1.13e-37!86;UBERON:0003080!6.21e-37!42;UBERON:0000955!5.28e-36!69;UBERON:0006238!5.28e-36!69;UBERON:0002346!1.54e-35!90;UBERON:0001893!3.52e-33!34;UBERON:0001869!1.61e-32!32;UBERON:0007023!2.52e-32!115;UBERON:0002791!4.82e-31!33;UBERON:0002020!2.15e-30!34;UBERON:0003528!2.15e-30!34;UBERON:0003056!2.68e-27!61;UBERON:0002619!1.03e-23!22;UBERON:0001950!9.12e-23!20;UBERON:0000033!2.04e-21!123;UBERON:0000153!3.26e-21!129;UBERON:0007811!3.26e-21!129;UBERON:0000956!1.63e-20!25;UBERON:0000203!1.63e-20!25;UBERON:0004121!2.57e-19!169;UBERON:0000924!1.29e-18!173;UBERON:0006601!1.29e-18!173;UBERON:0002420!2.34e-15!9;UBERON:0007245!2.34e-15!9;UBERON:0010009!2.34e-15!9;UBERON:0010011!2.34e-15!9;UBERON:0000454!2.34e-15!9;UBERON:0003076!2.62e-13!15;UBERON:0003057!2.62e-13!15;UBERON:0000369!2.15e-12!4;UBERON:0002435!2.15e-12!4;UBERON:0000204!2.15e-12!4;UBERON:0010082!2.15e-12!4;UBERON:0001871!4.92e-12!7;UBERON:0002308!1.59e-11!9;UBERON:0000125!1.59e-11!9;UBERON:0000200!2.69e-11!6;UBERON:0009663!1.20e-10!7;UBERON:0004733!3.18e-10!12;UBERON:0002028!3.18e-10!12;UBERON:0007277!3.18e-10!12;UBERON:0005383!8.34e-10!3;UBERON:0005382!8.34e-10!3;UBERON:0000025!1.36e-09!194;UBERON:0000349!1.94e-09!5;UBERON:0004732!2.37e-09!13;UBERON:0004111!3.29e-09!241;UBERON:0002771!7.46e-09!3;UBERON:0000477!7.76e-08!286;UBERON:0002680!1.27e-07!9;UBERON:0001895!1.27e-07!9;UBERON:0010092!1.27e-07!9;UBERON:0001873!5.01e-07!2;UBERON:0010122!5.01e-07!2|ontology_enrichment_uberon_v019=UBERON:0005383;7.01e-25;3!UBERON:0005382;7.01e-25;3!UBERON:0009663;1.05e-23;7!UBERON:0001874;2.71e-19;1!UBERON:0000369;6.17e-19;4!UBERON:0002435;6.17e-19;4!UBERON:0000204;6.17e-19;4!UBERON:0002420;1.32e-18;9!UBERON:0000125;1.32e-18;9!UBERON:0007245;1.32e-18;9!UBERON:0002308;1.32e-18;9!UBERON:0010009;1.32e-18;9!UBERON:0010011;1.32e-18;9!UBERON:0000454;1.32e-18;9!UBERON:0002021;2.33e-15;5!UBERON:0002791;4.81e-14;32!UBERON:0001869;3.89e-13;32!UBERON:0001893;3.34e-11;34!UBERON:0002780;2.05e-10;41!UBERON:0001890;2.05e-10;41!UBERON:0001873;2.48e-10;2!UBERON:0001875;2.48e-10;2!UBERON:0006514;2.48e-10;2!UBERON:0003528;1.16e-09;34!UBERON:0002020;1.16e-09;34!UBERON:0000988;2.63e-07;3!UBERON:0000955;3.96e-07;68!UBERON:0000073;4.82e-07;53!UBERON:0002616;4.82e-07;53|ontology_enrichment_uberon_v019_2=UBERON:0005383,6.22e-25,3;UBERON:0005382,6.22e-25,3;UBERON:0009663,1.14e-23,7;UBERON:0001874,1.88e-19,1;UBERON:0000369,5.64e-19,4;UBERON:0002435,5.64e-19,4;UBERON:0000204,5.64e-19,4;UBERON:0010082,5.64e-19,4;UBERON:0002420,1.41e-18,9;UBERON:0000125,1.41e-18,9;UBERON:0007245,1.41e-18,9;UBERON:0002308,1.41e-18,9;UBERON:0010009,1.41e-18,9;UBERON:0010011,1.41e-18,9;UBERON:0000454,1.41e-18,9;UBERON:0002021,1.62e-15,5;UBERON:0002791,9.27e-14,32;UBERON:0001869,9.27e-14,32;UBERON:0003528,5.58e-13,34;UBERON:0002020,5.58e-13,34;UBERON:0001893,5.58e-13,34;UBERON:0000073,6.84e-12,53;UBERON:0002616,6.84e-12,53;UBERON:0001049,2.94e-11,56;UBERON:0005068,2.94e-11,56;UBERON:0006241,2.94e-11,56;UBERON:0007135,2.94e-11,56;UBERON:0002780,7.85e-11,41;UBERON:0001890,7.85e-11,41;UBERON:0003080,7.85e-11,41;UBERON:0006240,7.85e-11,41;UBERON:0001873,2.72e-10,2;UBERON:0010122,2.72e-10,2;UBERON:0001875,2.99e-10,2;UBERON:0006514,2.99e-10,2;UBERON:0001016,2.71e-09,89;UBERON:0000955,3.88e-09,68;UBERON:0006238,3.88e-09,68;UBERON:0001017,1.13e-07,81;UBERON:0003075,1.13e-07,82;UBERON:0007284,1.13e-07,82;UBERON:0003056,2.39e-07,61;UBERON:0002346,2.60e-07,86;UBERON:0000988,2.63e-07,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.626909442956176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,2.8618874916641,1.14398982156026,1.11437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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=24141 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16097 | |||
|TSSclassifier=W | |||
|UniProt=Q9UJQ1 | |||
|association_with_transcript=112bp_to_ENST00000427562,uc002wni.1,uc010zrc.1_5end | |||
|coexpression_cluster_id=C1485 | |||
|description=CAGE_peak_14_at_LAMP5_5end | |||
|id=chr20:9495383..9495390,+ | |||
|ontology_enrichment_celltype=CL:0000784!7.02e-10!3 | |||
|ontology_enrichment_celltype_v019=CL:0000784;1.50e-54;3!CL:0000451;1.85e-15;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000784,5.41e-54,3;CL:0000451,2.61e-15,10 | |||
|ontology_enrichment_development_v019=UBERON:0010122;2.48e-10;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4960;8.94e-20;1!DOID:0070004;8.94e-20;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4960,8.95e-20,1;DOID:0070004,8.95e-20,1 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.58e-49!57;UBERON:0005068!1.58e-49!57;UBERON:0006241!1.58e-49!57;UBERON:0007135!1.58e-49!57;UBERON:0002616!1.55e-41!59;UBERON:0001017!1.38e-39!82;UBERON:0005743!2.05e-39!86;UBERON:0000073!3.74e-39!94;UBERON:0001016!3.74e-39!94;UBERON:0002780!5.39e-38!41;UBERON:0001890!5.39e-38!41;UBERON:0006240!5.39e-38!41;UBERON:0003075!1.13e-37!86;UBERON:0007284!1.13e-37!86;UBERON:0003080!6.21e-37!42;UBERON:0000955!5.28e-36!69;UBERON:0006238!5.28e-36!69;UBERON:0002346!1.54e-35!90;UBERON:0001893!3.52e-33!34;UBERON:0001869!1.61e-32!32;UBERON:0007023!2.52e-32!115;UBERON:0002791!4.82e-31!33;UBERON:0002020!2.15e-30!34;UBERON:0003528!2.15e-30!34;UBERON:0003056!2.68e-27!61;UBERON:0002619!1.03e-23!22;UBERON:0001950!9.12e-23!20;UBERON:0000033!2.04e-21!123;UBERON:0000153!3.26e-21!129;UBERON:0007811!3.26e-21!129;UBERON:0000956!1.63e-20!25;UBERON:0000203!1.63e-20!25;UBERON:0004121!2.57e-19!169;UBERON:0000924!1.29e-18!173;UBERON:0006601!1.29e-18!173;UBERON:0002420!2.34e-15!9;UBERON:0007245!2.34e-15!9;UBERON:0010009!2.34e-15!9;UBERON:0010011!2.34e-15!9;UBERON:0000454!2.34e-15!9;UBERON:0003076!2.62e-13!15;UBERON:0003057!2.62e-13!15;UBERON:0000369!2.15e-12!4;UBERON:0002435!2.15e-12!4;UBERON:0000204!2.15e-12!4;UBERON:0010082!2.15e-12!4;UBERON:0001871!4.92e-12!7;UBERON:0002308!1.59e-11!9;UBERON:0000125!1.59e-11!9;UBERON:0000200!2.69e-11!6;UBERON:0009663!1.20e-10!7;UBERON:0004733!3.18e-10!12;UBERON:0002028!3.18e-10!12;UBERON:0007277!3.18e-10!12;UBERON:0005383!8.34e-10!3;UBERON:0005382!8.34e-10!3;UBERON:0000025!1.36e-09!194;UBERON:0000349!1.94e-09!5;UBERON:0004732!2.37e-09!13;UBERON:0004111!3.29e-09!241;UBERON:0002771!7.46e-09!3;UBERON:0000477!7.76e-08!286;UBERON:0002680!1.27e-07!9;UBERON:0001895!1.27e-07!9;UBERON:0010092!1.27e-07!9;UBERON:0001873!5.01e-07!2;UBERON:0010122!5.01e-07!2 | |||
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|short_description=p14@LAMP5 | |||
}} |
Revision as of 09:45, 12 September 2013
Short description: | p14@LAMP5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_14_at_LAMP5_5end |
Coexpression cluster: | C1485_myeloma_putamen_caudate_nucleus_Dendritic_pons_Lymphatic |
Association with transcript: | 112bp_to_ENST00000427562, uc002wni.1, uc010zrc.1_5end |
EntrezGene: | LAMP5 |
HGNC: | 16097 |
UniProt: | Q9UJQ1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 5.41e-54 | 3 |
dendritic cell | 2.61e-15 | 10 |
Ontology term | p-value | n |
---|---|---|
bone marrow cancer | 8.95e-20 | 1 |
myeloma | 8.95e-20 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.