FFCP PHASE1:Hg19::chr3:149530983..149531065,+: Difference between revisions
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{{FFCP | 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253521889,56.0184989963236,37.1424938187816,81.4044059217531,47.2962909514965,96.5369914415178,40.0228507470036,22.7040723516724,36.0367552059018,39.7264458451252,83.6193531856839,75.4784846216592,6.102444903714,20.0909852648874,25.926644736038,19.921828966674,8.38111340937412,23.3142758928123,34.5887684224406,24.362099676827,76.7933704473152,37.101928895422,132.644313226951,165.15851957662,56.2875696639444,26.7829708480335,107.855286693372,111.143443705464,109.35911061166,74.4249032717926,27.2704052019163,24.1149344794174,37.6621342084407,50.0496379099916,65.9314421279701,85.1640703402423,95.0830629058433,38.1641453888069,111.64459067584,96.5227755374529,117.554283933403,192.092080556174,184.031296499638,127.235529626895,41.7812877507417,27.3707093437013,54.8969805500765,76.5047093900513,27.9966325440824,21.0750707613097,15.3616290327475,27.4628837311848,41.600969152806,43.8296630587064,31.4408988756648,38.2383210663914,40.0415049718441,79.8651838705263,42.9495823487599,30.3102541136422,35.928801447481,30.9035728297583,85.9123944232485,27.1710174533454,42.7147394076081,31.3693223178434,45.3918203776208,45.6783131351544,36.1764951560356,31.7359171899636,27.640996198789,40.4937800050182,50.5796798267558,34.6343423167796,18.8013049391682,45.6716287893114,49.5021748485901,23.9751306634437,28.1224952394663,24.6607830081165,19.3135776054257,15.6427088603468,25.0044272269741,19.8236730650239,31.6987248714233,31.8065490575801,32.6733233872274,19.4358060540469,23.7284267073225,39.8704159941251,42.2798505670112,20.7258205038719,24.9165164065453,127.197761259592,44.62301072422,43.3139379421564,35.0029943707507,26.5363977565594,20.3991514265587,27.6818881599801,17.9988656269437,36.7019550147845,90.585079301589,17.0254786070051,37.9258257518792,55.1125260414611,27.9934767014838,45.6582905554036,36.2291366292851,25.1625506969434,39.315469749125,37.5108891198396,31.6736630951507,24.7871528518004,37.4292095042073,26.3943611042337,47.4747704907545,13.609702720853,39.1470297496659,43.7931032615076,92.9396887145769,117.608158350236,127.068551809492,126.556796736546,44.3646185350224,64.1779302867942,122.075588097679,157.04636228507,52.9997679905538,80.2194118764635,53.5611507683303,57.7628330751691,41.1892663104541,6.90359926060101,26.058025097232,64.2296204102657,9.88354836647248,59.395064853715,23.0477891143652,55.5186800359228,43.4696893478113,100.495925912171,132.00219866574,113.057677686148,95.313962721442,50.8686572386944,204.500147037729,69.9657761528905,16.3560257254447,48.0386727924878,114.640192877953,195.044558886918,71.0149756956859,69.6646305534971,100.056273543457,35.1463662045127,79.3989483695248,176.857245205716,75.5729168237136,30.0212355845279,38.597296456548,83.3596646072459,74.1585584403529,26.9061276781237,37.4395075408893,64.7782773655864,67.3629879920741,92.9909839738299,27.178341218029,13.2515224919663,31.2944890144643,24.0513409419076,57.1916613089982,87.7492972262903,46.3143973415442,126.917070851982,64.9642684010804,62.8874927122584,69.4354762313124,23.1397937229491,33.8124960374109,14.3330840846615,35.1226055845068,43.8731544260136,67.0548587402482,52.4417358122195,68.7840805936855,46.392577253528,75.2852039241666,16.8436413692716,38.7954011564668,39.3625500473752,55.3435801990904,53.4310911382786,53.8937351533025,68.376304083639,53.5470923234695,77.6023538996513,88.7436924749138,28.9882152935,209.461134411647,264.965389091761,103.12799753035,22.4303791387918,85.1494296897473,55.8205309851178,50.9699895217138,51.9591961342464,33.8779076847064,51.1137505810002,40.898837741805,171.106022709894,270.051774657334,25.0856783887164,63.0281114069779,30.5445483238264,76.1798650342177,30.8755865078404,61.0071829793472,43.6952827745027,19.0511301500969,12.6748063477887,21.7921421739672,28.2509058385289,36.8760019266473,13.5085502316222,18.050942829051,74.9451325378388,36.9790499615526,213.925715380365,232.310508705817,76.3377655205512,62.8490099064275,49.9272273032327,59.2813521525443,28.705756820637,107.309108856986,61.0393910653822,80.3374799739787,65.0243272062034,46.54026863308,70.2160390794301,54.2236381170002,33.3753401304995,27.9625646199615,13.5150597600858,30.0016175036,56.313826176829,75.6674539491943,48.8275413978886,58.5865961283251,61.187233251672,28.2100273226845|short_description=p1@RNF13}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=11342 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10057 | |||
|TSSclassifier=S | |||
|UniProt=C9J7B4,F8WEX6,F8WDJ5,C9JCY0,F5H7D3 | |||
|association_with_transcript=0bp_to_ENST00000467977,ENST00000467996,ENST00000474348,ENST00000491086,ENST00000543506_5end | |||
|coexpression_cluster_id=C4293 | |||
|description=CAGE_peak_1_at_RNF13_5end | |||
|id=chr3:149530983..149531065,+ | |||
|ontology_enrichment_celltype=CL:0000766!4.40e-27!76;CL:0002194!9.55e-24!63;CL:0000576!9.55e-24!63;CL:0000040!9.55e-24!63;CL:0000559!9.55e-24!63;CL:0002009!1.34e-23!65;CL:0000557!2.44e-23!71;CL:0000839!1.39e-22!70;CL:0002057!1.36e-21!42;CL:0000860!9.16e-20!45;CL:0000738!1.74e-16!140;CL:0002087!3.93e-13!119;CL:0002031!9.45e-13!124;CL:0000763!1.43e-12!112;CL:0000049!1.43e-12!112;CL:0000037!7.64e-09!172;CL:0000566!7.64e-09!172;CL:0002032!2.72e-08!165;CL:0000837!2.72e-08!165 | |||
|ontology_enrichment_celltype_v019=CL:0000473;5.40e-18;39!CL:0000234;5.40e-18;39!CL:0000860;1.28e-17;33!CL:0002057;1.28e-17;33!CL:0000576;9.02e-15;48!CL:0000766;1.37e-12;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.61e-29,72;CL:0002194,4.27e-26,59;CL:0000576,4.27e-26,59;CL:0000040,4.27e-26,59;CL:0000559,4.27e-26,59;CL:0002009,7.13e-26,61;CL:0000557,1.99e-25,67;CL:0000473,2.07e-25,48;CL:0000234,2.07e-25,48;CL:0000839,1.22e-24,66;CL:0000860,1.36e-21,42;CL:0002057,1.36e-21,42;CL:0000738,2.14e-17,136;CL:0002087,5.35e-14,115;CL:0002031,1.43e-13,120;CL:0000763,1.90e-13,108;CL:0000049,1.90e-13,108;CL:0000037,2.45e-09,168;CL:0002032,8.94e-09,161;CL:0000837,8.94e-09,161;CL:0000988,2.69e-07,177 | |||
|ontology_enrichment_development_v019=CL:0002057;7.60e-16;42!UBERON:0006601;4.31e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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26845 | |||
|short_description=p1@RNF13 | |||
}} |
Revision as of 22:05, 12 September 2013
Short description: | p1@RNF13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_RNF13_5end |
Coexpression cluster: | C4293_Neutrophils_Eosinophils_spinal_CD14_substantia_thalamus_medulla |
Association with transcript: | 0bp_to_ENST00000467977, ENST00000467996, ENST00000474348, ENST00000491086, ENST00000543506_5end |
EntrezGene: | RNF13 |
HGNC: | 10057 |
UniProt: | C9J7B4F8WEX6F8WDJ5C9JCY0F5H7D3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.61e-29 | 72 |
monopoietic cell | 4.27e-26 | 59 |
monocyte | 4.27e-26 | 59 |
monoblast | 4.27e-26 | 59 |
promonocyte | 4.27e-26 | 59 |
macrophage dendritic cell progenitor | 7.13e-26 | 61 |
granulocyte monocyte progenitor cell | 1.99e-25 | 67 |
defensive cell | 2.07e-25 | 48 |
phagocyte | 2.07e-25 | 48 |
myeloid lineage restricted progenitor cell | 1.22e-24 | 66 |
classical monocyte | 1.36e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.36e-21 | 42 |
leukocyte | 2.14e-17 | 136 |
nongranular leukocyte | 5.35e-14 | 115 |
hematopoietic lineage restricted progenitor cell | 1.43e-13 | 120 |
myeloid cell | 1.90e-13 | 108 |
common myeloid progenitor | 1.90e-13 | 108 |
hematopoietic stem cell | 2.45e-09 | 168 |
hematopoietic oligopotent progenitor cell | 8.94e-09 | 161 |
hematopoietic multipotent progenitor cell | 8.94e-09 | 161 |
hematopoietic cell | 2.69e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
adult organism | 6.02e-39 | 114 |
hematopoietic system | 4.82e-24 | 98 |
blood island | 4.82e-24 | 98 |
bone marrow | 9.33e-21 | 76 |
hemolymphoid system | 2.68e-20 | 108 |
bone element | 7.57e-18 | 82 |
immune system | 2.76e-17 | 93 |
neural tube | 4.90e-17 | 56 |
neural rod | 4.90e-17 | 56 |
future spinal cord | 4.90e-17 | 56 |
neural keel | 4.90e-17 | 56 |
skeletal element | 1.49e-16 | 90 |
regional part of nervous system | 1.86e-15 | 53 |
regional part of brain | 1.86e-15 | 53 |
skeletal system | 2.97e-15 | 100 |
regional part of forebrain | 2.36e-14 | 41 |
forebrain | 2.36e-14 | 41 |
anterior neural tube | 2.36e-14 | 41 |
future forebrain | 2.36e-14 | 41 |
nervous system | 2.77e-11 | 89 |
central nervous system | 2.79e-11 | 81 |
brain grey matter | 3.61e-11 | 34 |
gray matter | 3.61e-11 | 34 |
telencephalon | 4.30e-11 | 34 |
brain | 4.71e-11 | 68 |
future brain | 4.71e-11 | 68 |
regional part of telencephalon | 3.55e-10 | 32 |
cerebral hemisphere | 5.73e-10 | 32 |
regional part of cerebral cortex | 6.42e-09 | 22 |
neural plate | 3.39e-08 | 82 |
presumptive neural plate | 3.39e-08 | 82 |
neocortex | 4.70e-08 | 20 |
neurectoderm | 2.51e-07 | 86 |
cerebral cortex | 3.61e-07 | 25 |
pallium | 3.61e-07 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.