FFCP PHASE1:Mm9::chr1:67085398..67085446,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=14768|HGNC=|MCL_coexpression_id=60|UniProt=O89112,B2KGR2|association_with_transcript=0bp_to_ENSMUST00000027149,ENSMUST00000113979,ENSMUST00000119559,ENSMUST00000149996,NM_001190984,NM_001190985,NM_021295,uc007biv.1,uc007biw.2,uc007bix.2_5end|description=CAGE_peak_1_at_Lancl1_5end|id=chr1:67085398..67085446,-|ontology_enrichment_celltype=CL:0000117!2.76e-12!23;CL:0000337!2.76e-12!23;CL:0000221!9.41e-12!44;CL:0000133!9.41e-12!44;CL:0000055!1.21e-11!50;CL:0002319!1.22e-11!43;CL:0000393!1.04e-10!39;CL:0000211!1.04e-10!39;CL:0000540!1.51e-10!33;CL:0000047!1.51e-10!33;CL:0000031!1.51e-10!33;CL:0000404!1.51e-10!33;CL:0002321!2.76e-07!70;CL:0000220!2.76e-07!70|ontology_enrichment_celltype_v019_2=CL:0000117,2.76e-12,23;CL:0000337,2.76e-12,23;CL:0000221,9.41e-12,44;CL:0000133,9.41e-12,44;CL:0002319,1.22e-11,43;CL:0000393,1.04e-10,39;CL:0000211,1.04e-10,39;CL:0000540,1.51e-10,33;CL:0000047,1.51e-10,33;CL:0000031,1.51e-10,33;CL:0000404,1.51e-10,33;CL:0002321,2.76e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!9.56e-30!73;UBERON:0005743!9.56e-30!73;UBERON:0000073!6.17e-28!75;UBERON:0001016!6.17e-28!75;UBERON:0001049!1.08e-25!52;UBERON:0005068!1.08e-25!52;UBERON:0006241!1.08e-25!52;UBERON:0007135!1.08e-25!52;UBERON:0000955!7.11e-25!50;UBERON:0006238!7.11e-25!50;UBERON:0002616!2.49e-24!49;UBERON:0000033!6.77e-24!63;UBERON:0004121!1.68e-22!102;UBERON:0000924!1.68e-22!102;UBERON:0006601!1.68e-22!102;UBERON:0002346!1.58e-21!71;UBERON:0003075!1.58e-21!71;UBERON:0007284!1.58e-21!71;UBERON:0003080!4.84e-19!40;UBERON:0002020!7.15e-19!34;UBERON:0002780!1.64e-18!39;UBERON:0001890!1.64e-18!39;UBERON:0006240!1.64e-18!39;UBERON:0003056!4.36e-18!49;UBERON:0000153!7.34e-18!94;UBERON:0007811!1.97e-17!86;UBERON:0002791!2.94e-16!29;UBERON:0003528!2.94e-16!29;UBERON:0001893!2.94e-16!29;UBERON:0000956!3.56e-12!21;UBERON:0001869!3.56e-12!21;UBERON:0000203!3.56e-12!21;UBERON:0002619!1.88e-10!17;UBERON:0004111!1.59e-09!122;UBERON:0000025!1.58e-08!114;UBERON:0002021!6.83e-08!10;UBERON:0000411!6.83e-08!10;UBERON:0001950!6.83e-08!10;UBERON:0003076!3.40e-07!12;UBERON:0003057!3.40e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.56e-30,73;UBERON:0001016,6.17e-28,75;UBERON:0000073,3.33e-27,54;UBERON:0001049,1.08e-25,52;UBERON:0005068,1.08e-25,52;UBERON:0006241,1.08e-25,52;UBERON:0007135,1.08e-25,52;UBERON:0004121,1.41e-24,95;UBERON:0000924,1.41e-24,95;UBERON:0006601,1.41e-24,95;UBERON:0002346,1.85e-24,64;UBERON:0003075,1.85e-24,64;UBERON:0007284,1.85e-24,64;UBERON:0000955,9.04e-23,47;UBERON:0006238,9.04e-23,47;UBERON:0010371,1.34e-22,73;UBERON:0002616,3.09e-22,46;UBERON:0003080,4.84e-19,40;UBERON:0002020,7.15e-19,34;UBERON:0002780,1.64e-18,39;UBERON:0001890,1.64e-18,39;UBERON:0006240,1.64e-18,39;UBERON:0003056,4.36e-18,49;UBERON:0003528,2.94e-16,29;UBERON:0002791,2.94e-16,29;UBERON:0001893,2.94e-16,29;UBERON:0010314,7.49e-15,92;UBERON:0000956,3.56e-12,21;UBERON:0001869,3.56e-12,21;UBERON:0000203,3.56e-12,21;UBERON:0002619,1.88e-10,17;UBERON:0004111,1.59e-09,122;UBERON:0000025,1.58e-08,114;UBERON:0002021,6.83e-08,10;UBERON:0000411,6.83e-08,10;UBERON:0001950,6.83e-08,10;UBERON:0003076,3.40e-07,12;UBERON:0003057,3.40e-07,12|phase1_expression=45.8025702719711,1.39590163055744,5.0049916332849,2.41971369045464,2.00358291978539,12.5909453933917,9.57811826441655,24.1460614835748,6.89864738543167,7.49006484230379,8.04724450659873,7.0199499915896,19.6880839420887,25.4393371039282,16.6554880907831,14.1732687172878,22.3859801001007,14.0380663584416,13.0258711925452,14.429248161133,65.4833334163237,17.5744983625567,22.4631818659484,7.83962871687693,8.02932483735095,4.59385571292016,4.73838195774982,6.46413698057667,8.7410772949932,7.30887376303799,10.199603490144,25.4012269383852,23.9875267157982,0,32.3513814121428,31.9170519088305,36.5463147709641,2.51118978442145,4.6880120671428,2.61761871986899,2.94115744015507,1.36609096991689,0.971020706062307,34.6216249432838,31.528225609269,32.854868636941,68.0680469582794,34.665999864491,39.104140526736,46.0798860806052,25.477528735816,35.9381410912429,14.2615215149076,23.9369506863744,17.8129713545506,23.4106086792712,24.9284092746718,25.7836046138721,56.4462925798278,67.1818543675482,55.7771635085438,39.6448102520885,38.239676232779,30.1466405289269,43.5101199529469,39.0764063220355,54.2276200038313,51.4852529130883,39.50574228953,49.9521971827255,47.1127913427096,69.6988401945281,70.0153274816615,42.626798126804,36.7088153999845,57.9107835564313,135.442533629248,81.2091470221794,82.1794952920903,48.6660401724415,51.6905186353615,44.2776364973246,97.7140496504833,77.0984775743402,86.942202985005,64.8182888042069,57.8029024044358,47.3454592396263,12.8734528666413,17.6837450649878,20.0006497204158,21.5105969245347,46.9180220258348,42.6365521393876,39.6363614643078,41.2184736129549,28.9315505471409,19.5994870964766,22.6013824004496,24.0270910667031,29.1545878937729,10.2661181931454,28.028576367731,21.3320010945999,12.123498296628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| ||
|EntrezGene=14768 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|UniProt=O89112,B2KGR2 | |||
|association_with_transcript=0bp_to_ENSMUST00000027149,ENSMUST00000113979,ENSMUST00000119559,ENSMUST00000149996,NM_001190984,NM_001190985,NM_021295,uc007biv.1,uc007biw.2,uc007bix.2_5end | |||
|description=CAGE_peak_1_at_Lancl1_5end | |||
|id=chr1:67085398..67085446,- | |||
|ontology_enrichment_celltype=CL:0000117!2.76e-12!23;CL:0000337!2.76e-12!23;CL:0000221!9.41e-12!44;CL:0000133!9.41e-12!44;CL:0000055!1.21e-11!50;CL:0002319!1.22e-11!43;CL:0000393!1.04e-10!39;CL:0000211!1.04e-10!39;CL:0000540!1.51e-10!33;CL:0000047!1.51e-10!33;CL:0000031!1.51e-10!33;CL:0000404!1.51e-10!33;CL:0002321!2.76e-07!70;CL:0000220!2.76e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.76e-12,23;CL:0000337,2.76e-12,23;CL:0000221,9.41e-12,44;CL:0000133,9.41e-12,44;CL:0002319,1.22e-11,43;CL:0000393,1.04e-10,39;CL:0000211,1.04e-10,39;CL:0000540,1.51e-10,33;CL:0000047,1.51e-10,33;CL:0000031,1.51e-10,33;CL:0000404,1.51e-10,33;CL:0002321,2.76e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.56e-30!73;UBERON:0005743!9.56e-30!73;UBERON:0000073!6.17e-28!75;UBERON:0001016!6.17e-28!75;UBERON:0001049!1.08e-25!52;UBERON:0005068!1.08e-25!52;UBERON:0006241!1.08e-25!52;UBERON:0007135!1.08e-25!52;UBERON:0000955!7.11e-25!50;UBERON:0006238!7.11e-25!50;UBERON:0002616!2.49e-24!49;UBERON:0000033!6.77e-24!63;UBERON:0004121!1.68e-22!102;UBERON:0000924!1.68e-22!102;UBERON:0006601!1.68e-22!102;UBERON:0002346!1.58e-21!71;UBERON:0003075!1.58e-21!71;UBERON:0007284!1.58e-21!71;UBERON:0003080!4.84e-19!40;UBERON:0002020!7.15e-19!34;UBERON:0002780!1.64e-18!39;UBERON:0001890!1.64e-18!39;UBERON:0006240!1.64e-18!39;UBERON:0003056!4.36e-18!49;UBERON:0000153!7.34e-18!94;UBERON:0007811!1.97e-17!86;UBERON:0002791!2.94e-16!29;UBERON:0003528!2.94e-16!29;UBERON:0001893!2.94e-16!29;UBERON:0000956!3.56e-12!21;UBERON:0001869!3.56e-12!21;UBERON:0000203!3.56e-12!21;UBERON:0002619!1.88e-10!17;UBERON:0004111!1.59e-09!122;UBERON:0000025!1.58e-08!114;UBERON:0002021!6.83e-08!10;UBERON:0000411!6.83e-08!10;UBERON:0001950!6.83e-08!10;UBERON:0003076!3.40e-07!12;UBERON:0003057!3.40e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.56e-30,73;UBERON:0001016,6.17e-28,75;UBERON:0000073,3.33e-27,54;UBERON:0001049,1.08e-25,52;UBERON:0005068,1.08e-25,52;UBERON:0006241,1.08e-25,52;UBERON:0007135,1.08e-25,52;UBERON:0004121,1.41e-24,95;UBERON:0000924,1.41e-24,95;UBERON:0006601,1.41e-24,95;UBERON:0002346,1.85e-24,64;UBERON:0003075,1.85e-24,64;UBERON:0007284,1.85e-24,64;UBERON:0000955,9.04e-23,47;UBERON:0006238,9.04e-23,47;UBERON:0010371,1.34e-22,73;UBERON:0002616,3.09e-22,46;UBERON:0003080,4.84e-19,40;UBERON:0002020,7.15e-19,34;UBERON:0002780,1.64e-18,39;UBERON:0001890,1.64e-18,39;UBERON:0006240,1.64e-18,39;UBERON:0003056,4.36e-18,49;UBERON:0003528,2.94e-16,29;UBERON:0002791,2.94e-16,29;UBERON:0001893,2.94e-16,29;UBERON:0010314,7.49e-15,92;UBERON:0000956,3.56e-12,21;UBERON:0001869,3.56e-12,21;UBERON:0000203,3.56e-12,21;UBERON:0002619,1.88e-10,17;UBERON:0004111,1.59e-09,122;UBERON:0000025,1.58e-08,114;UBERON:0002021,6.83e-08,10;UBERON:0000411,6.83e-08,10;UBERON:0001950,6.83e-08,10;UBERON:0003076,3.40e-07,12;UBERON:0003057,3.40e-07,12 | |||
|phase1_expression=45.8025702719711,1.39590163055744,5.0049916332849,2.41971369045464,2.00358291978539,12.5909453933917,9.57811826441655,24.1460614835748,6.89864738543167,7.49006484230379,8.04724450659873,7.0199499915896,19.6880839420887,25.4393371039282,16.6554880907831,14.1732687172878,22.3859801001007,14.0380663584416,13.0258711925452,14.429248161133,65.4833334163237,17.5744983625567,22.4631818659484,7.83962871687693,8.02932483735095,4.59385571292016,4.73838195774982,6.46413698057667,8.7410772949932,7.30887376303799,10.199603490144,25.4012269383852,23.9875267157982,0,32.3513814121428,31.9170519088305,36.5463147709641,2.51118978442145,4.6880120671428,2.61761871986899,2.94115744015507,1.36609096991689,0.971020706062307,34.6216249432838,31.528225609269,32.854868636941,68.0680469582794,34.665999864491,39.104140526736,46.0798860806052,25.477528735816,35.9381410912429,14.2615215149076,23.9369506863744,17.8129713545506,23.4106086792712,24.9284092746718,25.7836046138721,56.4462925798278,67.1818543675482,55.7771635085438,39.6448102520885,38.239676232779,30.1466405289269,43.5101199529469,39.0764063220355,54.2276200038313,51.4852529130883,39.50574228953,49.9521971827255,47.1127913427096,69.6988401945281,70.0153274816615,42.626798126804,36.7088153999845,57.9107835564313,135.442533629248,81.2091470221794,82.1794952920903,48.6660401724415,51.6905186353615,44.2776364973246,97.7140496504833,77.0984775743402,86.942202985005,64.8182888042069,57.8029024044358,47.3454592396263,12.8734528666413,17.6837450649878,20.0006497204158,21.5105969245347,46.9180220258348,42.6365521393876,39.6363614643078,41.2184736129549,28.9315505471409,19.5994870964766,22.6013824004496,24.0270910667031,29.1545878937729,10.2661181931454,28.028576367731,21.3320010945999,12.123498296628,13.1747130047051,12.6381111253696,25.3488212976313,11.9111426477699,25.0867215019554,21.8591511725331,18.8768596553528,20.0635482612771,22.9098413639986,19.519725384527,20.9863207520558,10.8765785803125,24.581890676385,11.4999371753484,13.5884153955824,12.1462835153216,15.5160081003271,16.775258509631,64.7045561395519,77.7047282277918,10.7291963187608,21.4469072865597,19.196887391789,18.0439722443752,61.713743434787,70.4550928340685,43.8533688873897,91.2577681009451,79.7832226870631,69.1934188383335,65.2209877532386,27.4966282395854,14.3068016201607,28.3049489445716,18.0979996062368,20.9493913169953,33.565707247287,25.3887603025542,39.6353670907931,34.2223590731179,27.0319949801033,29.5160432363146,23.5420067372504,19.8322553498215,28.1768059450051,29.7357399837074,31.5641854695708,28.9169139194622,38.6559904839605,38.0696952354695,28.0638316214075,18.2575428701441,18.0143534980301,25.5747149456033,15.3273071676271,16.4168241986767,21.6074473753218,18.7028341112316,20.0699516382352,16.5065810789495,15.3472403535269,22.2666923161684,20.667465598989,12.0128690436841,15.595909087514,17.9162069096341,18.8597983778679,14.2707574939183,17.9836601138898,80.1204704029325,48.1593585935051,4.62586296177317,12.4291766331866,24.5281488115519,31.1197140292988,18.2991795077373,15.9329984452441,14.4545728499166,14.4571475845545,7.59246498471219,14.822905925161,13.5721012752146,10.7436494902221,11.6978452271472,8.08937467788799,9.94235029423593,9.95706366271836,31.1055357563054,21.5929688832387,19.1603150644237,17.9213168503877,21.9166310499417,20.2692519483021,19.5400899713955,13.1373031701846,18.3688511574409,20.2371348831753,20.7516838961004,10.67808676583,13.9556886530374,10.1187950573184,9.33156558387113,12.5412123071257,14.2590476997595,14.0971107350897,21.7261203878547,9.88421087477093,8.62609239164127,14.1413560114031,15.9139213288426,15.1547326768267,19.3749206603665,36.6657076236159,19.3990849674935,31.4555743539005,22.9780616783256,18.8417045210459,24.8771663185812,24.7909261013887,25.9467568565755,20.4890330250689,20.4925687338048,24.8040452406628,29.4991322016351,20.3190510247515,20.0314578964439,21.2634116114822,9.04747703635634,10.3342079925555,13.277635371514,11.8652800911035,80.7569467638594,63.8803691927507,17.2131692645509,31.5588659005466,29.9732808445444,24.2072021463916,25.4199609324703,23.1799734013975,19.8290819933331,20.9476632783736,27.1223170122179,26.5952830699294,26.0889933444706,56.8738730066598,20.2974321847824,37.3937767701236,31.111409236533,20.7862354945395,18.5843193675948,19.9080121647085,18.1394134178851,21.1237689326606,23.6241514304618,19.0609791725235,18.3484088149437,22.9026249570828,23.8853243517763,20.542389265828,11.5960469432499,26.8152412445286,30.6395645178409,25.7487364464774,34.797485937561,38.1519922356234,32.9852834574629,27.6471667283209,36.2007845324666,42.0161629778147,8.44818149029357,16.522901527378,24.9197089802107,47.9818996059707,31.3240987790057,21.0492107999264,21.6063942645677,20.5176124681327,10.7847909553045,75.653523220288,15.3783792718067,16.9237231729842,14.6303676622072,12.4323181623096,10.2520670790769,12.1252431799457,29.5762468189308,27.1505817507897,27.2253948394715,15.2747298882418,26.8885594543965,29.684642200519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| |||
|short_description=p1@Lancl1 | |||
}} |
Revision as of 20:46, 13 September 2013
Short description: | p1@Lancl1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Lancl1_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000027149, ENSMUST00000113979, ENSMUST00000119559, ENSMUST00000149996, NM_001190984, NM_001190985, NM_021295, uc007biv.1, uc007biw.2, uc007bix.2_5end |
EntrezGene: | Lancl1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.76e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.76e-12 | 23 |
ectodermal cell | 9.41e-12 | 44 |
neurectodermal cell | 9.41e-12 | 44 |
neural cell | 1.22e-11 | 43 |
electrically responsive cell | 1.04e-10 | 39 |
electrically active cell | 1.04e-10 | 39 |
neuron | 1.51e-10 | 33 |
neuronal stem cell | 1.51e-10 | 33 |
neuroblast | 1.51e-10 | 33 |
electrically signaling cell | 1.51e-10 | 33 |
embryonic cell | 2.76e-07 | 70 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.