FFCP PHASE1:Hg19::chr3:101498026..101498067,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=91775 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28238 | |||
|TSSclassifier=strong | |||
|UniProt=Q969Y0 | |||
|association_with_transcript=0bp_to_ENST00000495842,NM_145037,uc003dvn.2_5end | |||
|description=CAGE_peak_1_at_FAM55C_5end | |||
|id=chr3:101498026..101498067,+ | |||
|ontology_enrichment_celltype=CL:0000791!1.23e-08!18;CL:0000789!1.23e-08!18;CL:0002420!1.23e-08!18;CL:0002419!1.23e-08!18;CL:0000790!1.23e-08!18;CL:0000084!6.61e-08!25;CL:0000827!6.61e-08!25 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.21e-08;18!CL:0000789;1.21e-08;18!CL:0002419;1.21e-08;18!CL:0000084;6.44e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.21e-08,18;CL:0000789,1.21e-08,18;CL:0002420,1.21e-08,18;CL:0002419,1.21e-08,18;CL:0000790,1.21e-08,18;CL:0000084,7.83e-08,25;CL:0000827,7.83e-08,25 | |||
|ontology_enrichment_development_v019=CL:0000790;1.21e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002616!5.31e-19!59;UBERON:0001049!1.35e-18!57;UBERON:0005068!1.35e-18!57;UBERON:0006241!1.35e-18!57;UBERON:0007135!1.35e-18!57;UBERON:0001017!1.94e-16!82;UBERON:0000073!2.69e-16!94;UBERON:0001016!2.69e-16!94;UBERON:0005743!2.72e-16!86;UBERON:0000955!4.78e-16!69;UBERON:0006238!4.78e-16!69;UBERON:0002780!7.26e-16!41;UBERON:0001890!7.26e-16!41;UBERON:0006240!7.26e-16!41;UBERON:0003080!9.32e-15!42;UBERON:0003075!2.89e-14!86;UBERON:0007284!2.89e-14!86;UBERON:0000153!1.93e-13!129;UBERON:0007811!1.93e-13!129;UBERON:0001893!3.19e-13!34;UBERON:0002020!7.24e-13!34;UBERON:0003528!7.24e-13!34;UBERON:0002346!9.42e-13!90;UBERON:0007023!1.12e-12!115;UBERON:0002791!1.13e-12!33;UBERON:0000033!2.52e-12!123;UBERON:0001869!4.68e-12!32;UBERON:0003056!1.34e-11!61;UBERON:0004121!2.70e-10!169;UBERON:0000924!1.72e-09!173;UBERON:0006601!1.72e-09!173;UBERON:0000956!4.17e-09!25;UBERON:0000203!4.17e-09!25;UBERON:0002619!9.28e-09!22;UBERON:0001950!5.12e-08!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.49e-11;34!UBERON:0002780;2.84e-11;41!UBERON:0001890;2.84e-11;41!UBERON:0003528;3.95e-11;34!UBERON:0002020;3.95e-11;34!UBERON:0000073;5.81e-11;53!UBERON:0002616;5.81e-11;53!UBERON:0002791;6.70e-11;32!UBERON:0001869;8.31e-11;32!UBERON:0000956;5.15e-09;25!UBERON:0000203;5.15e-09;25!UBERON:0002619;9.60e-09;22!UBERON:0000955;4.06e-08;68!UBERON:0001950;5.70e-08;20!UBERON:0001017;1.78e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,9.46e-20,56;UBERON:0005068,9.46e-20,56;UBERON:0006241,9.46e-20,56;UBERON:0007135,9.46e-20,56;UBERON:0000073,1.60e-18,53;UBERON:0002616,1.60e-18,53;UBERON:0001017,2.26e-17,81;UBERON:0001016,2.81e-17,89;UBERON:0000955,4.98e-17,68;UBERON:0006238,4.98e-17,68;UBERON:0003075,1.19e-16,82;UBERON:0007284,1.19e-16,82;UBERON:0002780,5.98e-16,41;UBERON:0001890,5.98e-16,41;UBERON:0003080,5.98e-16,41;UBERON:0006240,5.98e-16,41;UBERON:0010314,6.35e-16,132;UBERON:0002346,7.45e-15,86;UBERON:0001893,2.65e-13,34;UBERON:0010371,2.77e-13,104;UBERON:0003528,6.03e-13,34;UBERON:0002020,6.03e-13,34;UBERON:0003056,6.10e-13,61;UBERON:0007023,2.99e-12,114;UBERON:0002791,3.90e-12,32;UBERON:0001869,3.91e-12,32;UBERON:0004121,7.71e-11,171;UBERON:0000924,7.71e-11,171;UBERON:0006601,7.71e-11,171;UBERON:0000956,3.53e-09,25;UBERON:0000203,3.53e-09,25;UBERON:0002619,7.83e-09,22;UBERON:0001950,4.33e-08,20 | |||
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| |||
|short_description=p1@FAM55C | |||
}} |
Revision as of 20:15, 21 January 2014
Short description: | p1@FAM55C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_FAM55C_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000495842, NM_145037, uc003dvn.2_5end |
EntrezGene: | FAM55C |
HGNC: | 28238 |
UniProt: | Q969Y0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.21e-08 | 18 |
alpha-beta T cell | 1.21e-08 | 18 |
immature T cell | 1.21e-08 | 18 |
mature T cell | 1.21e-08 | 18 |
immature alpha-beta T cell | 1.21e-08 | 18 |
T cell | 7.83e-08 | 25 |
pro-T cell | 7.83e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
neural tube | 9.46e-20 | 56 |
neural rod | 9.46e-20 | 56 |
future spinal cord | 9.46e-20 | 56 |
neural keel | 9.46e-20 | 56 |
regional part of nervous system | 1.60e-18 | 53 |
regional part of brain | 1.60e-18 | 53 |
central nervous system | 2.26e-17 | 81 |
nervous system | 2.81e-17 | 89 |
brain | 4.98e-17 | 68 |
future brain | 4.98e-17 | 68 |
neural plate | 1.19e-16 | 82 |
presumptive neural plate | 1.19e-16 | 82 |
regional part of forebrain | 5.98e-16 | 41 |
forebrain | 5.98e-16 | 41 |
anterior neural tube | 5.98e-16 | 41 |
future forebrain | 5.98e-16 | 41 |
structure with developmental contribution from neural crest | 6.35e-16 | 132 |
neurectoderm | 7.45e-15 | 86 |
telencephalon | 2.65e-13 | 34 |
ecto-epithelium | 2.77e-13 | 104 |
brain grey matter | 6.03e-13 | 34 |
gray matter | 6.03e-13 | 34 |
pre-chordal neural plate | 6.10e-13 | 61 |
adult organism | 2.99e-12 | 114 |
regional part of telencephalon | 3.90e-12 | 32 |
cerebral hemisphere | 3.91e-12 | 32 |
ectoderm-derived structure | 7.71e-11 | 171 |
ectoderm | 7.71e-11 | 171 |
presumptive ectoderm | 7.71e-11 | 171 |
cerebral cortex | 3.53e-09 | 25 |
pallium | 3.53e-09 | 25 |
regional part of cerebral cortex | 7.83e-09 | 22 |
neocortex | 4.33e-08 | 20 |