FFCP PHASE1:Hg19::chr6:99280819..99280823,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr6:99280819..99280823,+ | |||
|id=chr6:99280819..99280823,+ | |||
|ontology_enrichment_celltype=CL:0002319!5.33e-12!25;CL:0002605!2.01e-10!3;CL:0000047!2.84e-10!8;CL:0000128!1.05e-07!7;CL:0000126!1.05e-07!7;CL:0000127!1.05e-07!7;CL:0002453!1.05e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0002319;3.42e-15;25!CL:0000128;4.37e-15;7!CL:0000126;4.37e-15;7!CL:0000127;4.37e-15;7!CL:0000047;7.30e-14;2!CL:0002605;1.47e-09;3!CL:0000243;9.10e-07;15!CL:0000125;9.10e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,3.30e-15,25;CL:0000128,4.07e-15,7;CL:0000126,4.07e-15,7;CL:0000127,4.07e-15,7;CL:0002453,4.07e-15,7;CL:0000047,1.51e-13,8;CL:0002605,1.54e-09,3;CL:0000133,5.88e-07,59;CL:0000243,8.84e-07,15;CL:0000125,8.84e-07,15;CL:0000030,8.84e-07,15;CL:0000339,8.84e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0006241;1.47e-09;3!UBERON:0003057;1.47e-09;3!CL:0000133;1.10e-07;59!CL:0000339;9.10e-07;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.40e-74!82;UBERON:0005743!3.68e-70!86;UBERON:0000073!3.28e-68!94;UBERON:0001016!3.28e-68!94;UBERON:0001049!1.29e-67!57;UBERON:0005068!1.29e-67!57;UBERON:0006241!1.29e-67!57;UBERON:0007135!1.29e-67!57;UBERON:0000955!6.46e-56!69;UBERON:0006238!6.46e-56!69;UBERON:0002616!5.50e-54!59;UBERON:0001893!6.31e-53!34;UBERON:0002791!1.43e-50!33;UBERON:0002780!1.64e-50!41;UBERON:0001890!1.64e-50!41;UBERON:0006240!1.64e-50!41;UBERON:0003080!3.74e-49!42;UBERON:0002020!1.86e-48!34;UBERON:0003528!1.86e-48!34;UBERON:0001869!1.01e-47!32;UBERON:0003075!3.39e-44!86;UBERON:0007284!3.39e-44!86;UBERON:0002346!8.59e-42!90;UBERON:0000956!1.20e-38!25;UBERON:0000203!1.20e-38!25;UBERON:0001950!5.03e-34!20;UBERON:0004121!5.01e-33!169;UBERON:0000924!5.40e-32!173;UBERON:0006601!5.40e-32!173;UBERON:0003056!1.09e-31!61;UBERON:0002619!1.08e-30!22;UBERON:0000033!1.15e-30!123;UBERON:0000153!8.98e-29!129;UBERON:0007811!8.98e-29!129;UBERON:0007023!1.10e-21!115;UBERON:0003076!9.23e-19!15;UBERON:0003057!9.23e-19!15;UBERON:0000025!3.30e-17!194;UBERON:0001872!5.73e-16!5;UBERON:0002298!8.65e-13!8;UBERON:0004111!7.45e-12!241;UBERON:0004733!1.57e-11!12;UBERON:0002028!1.57e-11!12;UBERON:0007277!1.57e-11!12;UBERON:0002420!1.96e-11!9;UBERON:0007245!1.96e-11!9;UBERON:0010009!1.96e-11!9;UBERON:0010011!1.96e-11!9;UBERON:0000454!1.96e-11!9;UBERON:0002308!3.28e-11!9;UBERON:0000125!3.28e-11!9;UBERON:0004732!1.46e-10!13;UBERON:0002021!1.67e-10!5;UBERON:0009663!1.83e-10!7;UBERON:0002240!2.01e-10!3;UBERON:0001896!4.50e-10!3;UBERON:0005290!4.50e-10!3;UBERON:0010096!4.50e-10!3;UBERON:0000477!8.63e-10!286;UBERON:0001871!3.56e-09!7;UBERON:0000483!2.45e-08!309;UBERON:0000475!3.54e-08!365;UBERON:0000119!3.68e-08!312;UBERON:0000200!8.85e-08!6;UBERON:0000064!2.46e-07!219;UBERON:0000369!3.14e-07!4;UBERON:0002435!3.14e-07!4;UBERON:0000204!3.14e-07!4;UBERON:0010082!3.14e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002021;1.10e-20;5!UBERON:0000956;1.26e-15;25!UBERON:0000203;1.26e-15;25!UBERON:0002791;4.11e-12;32!UBERON:0001869;5.96e-12;32!UBERON:0001950;2.85e-11;20!UBERON:0001016;6.78e-11;83!UBERON:0003528;7.58e-11;34!UBERON:0002020;7.58e-11;34!UBERON:0002619;2.37e-10;22!UBERON:0001893;9.65e-10;34!UBERON:0002240;1.47e-09;3!UBERON:0005174;1.47e-09;3!UBERON:0001137;1.47e-09;3!UBERON:0002780;2.45e-08;41!UBERON:0001890;2.45e-08;41!UBERON:0001017;4.77e-08;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,1.34e-20,5;UBERON:0001017,4.48e-19,81;UBERON:0001016,3.23e-17,89;UBERON:0000956,1.47e-15,25;UBERON:0000203,1.47e-15,25;UBERON:0002791,2.32e-12,32;UBERON:0001869,2.32e-12,32;UBERON:0003528,1.11e-11,34;UBERON:0002020,1.11e-11,34;UBERON:0001893,1.11e-11,34;UBERON:0001950,3.22e-11,20;UBERON:0001049,4.62e-11,56;UBERON:0005068,4.62e-11,56;UBERON:0006241,4.62e-11,56;UBERON:0007135,4.62e-11,56;UBERON:0002619,2.66e-10,22;UBERON:0002780,8.31e-10,41;UBERON:0001890,8.31e-10,41;UBERON:0003080,8.31e-10,41;UBERON:0006240,8.31e-10,41;UBERON:0002240,1.19e-09,3;UBERON:0005174,1.19e-09,3;UBERON:0001137,1.19e-09,3;UBERON:0004121,4.33e-09,171;UBERON:0000924,4.33e-09,171;UBERON:0006601,4.33e-09,171;UBERON:0000955,4.86e-09,68;UBERON:0006238,4.86e-09,68;UBERON:0000073,1.03e-07,53;UBERON:0002616,1.03e-07,53;UBERON:0003075,1.17e-07,82;UBERON:0007284,1.17e-07,82;UBERON:0002346,2.60e-07,86;UBERON:0011216,6.23e-07,223;UBERON:0003056,9.21e-07,61 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572471974262113,1.36874425072884,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,2.60279707715243,0.773288812777695,0.670065061337395,4.46557126157214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0,0.16480387422676,0,0,0,0,1.43176155503017,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0.241192877250816,0,0.331737779793674,0.886642856860642,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.943615861729479,0,0.468528891450678,0,0,0,0,0,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379864775735272,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0.104602846312333,0,0,0,0.547621515567972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303747783290123,0,0,0.0524545881349981,0,0,0,0,0,0,0,0.864221491201268,0,0,0.082092520749339,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0.1251909307065,0.573409195690071,0.221858103073705,0.683060432355218,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0.109209638192014,0,0,0,0,0,0,0,0,0,0.192687675289379,1.41696576325585,0.319267718114302,0,1.00828678488687,0.276629009856872,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0.781078098613847,0.206686796501184,0.634158101939068,1.09394961803644,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0.460409414939944,0,0,0,0.314231179832004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0.588925401344836,1.48523200163543,0.4226557275834,0,0,0,0,0,0,0.0802413666891683,0,0,0.143339583151451,0,0.475940431336403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724030971033267,0,0,0,0,0.224263725161227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr6:99280819..99280823,+ | |||
}} |
Revision as of 13:04, 22 January 2014
Short description: | p@chr6:99280819..99280823, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr6:99280819..99280823, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 3.30e-15 | 25 |
oligodendrocyte | 4.07e-15 | 7 |
macroglial cell | 4.07e-15 | 7 |
astrocyte | 4.07e-15 | 7 |
oligodendrocyte precursor cell | 4.07e-15 | 7 |
neuronal stem cell | 1.51e-13 | 8 |
astrocyte of the cerebral cortex | 1.54e-09 | 3 |
neurectodermal cell | 5.88e-07 | 59 |
glial cell (sensu Vertebrata) | 8.84e-07 | 15 |
glial cell | 8.84e-07 | 15 |
glioblast | 8.84e-07 | 15 |
glioblast (sensu Vertebrata) | 8.84e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
occipital lobe | 1.34e-20 | 5 |
central nervous system | 4.48e-19 | 81 |
nervous system | 3.23e-17 | 89 |
cerebral cortex | 1.47e-15 | 25 |
pallium | 1.47e-15 | 25 |
regional part of telencephalon | 2.32e-12 | 32 |
cerebral hemisphere | 2.32e-12 | 32 |
brain grey matter | 1.11e-11 | 34 |
gray matter | 1.11e-11 | 34 |
telencephalon | 1.11e-11 | 34 |
neocortex | 3.22e-11 | 20 |
neural tube | 4.62e-11 | 56 |
neural rod | 4.62e-11 | 56 |
future spinal cord | 4.62e-11 | 56 |
neural keel | 4.62e-11 | 56 |
regional part of cerebral cortex | 2.66e-10 | 22 |
regional part of forebrain | 8.31e-10 | 41 |
forebrain | 8.31e-10 | 41 |
anterior neural tube | 8.31e-10 | 41 |
future forebrain | 8.31e-10 | 41 |
spinal cord | 1.19e-09 | 3 |
dorsal region element | 1.19e-09 | 3 |
dorsum | 1.19e-09 | 3 |
ectoderm-derived structure | 4.33e-09 | 171 |
ectoderm | 4.33e-09 | 171 |
presumptive ectoderm | 4.33e-09 | 171 |
brain | 4.86e-09 | 68 |
future brain | 4.86e-09 | 68 |
regional part of nervous system | 1.03e-07 | 53 |
regional part of brain | 1.03e-07 | 53 |
neural plate | 1.17e-07 | 82 |
presumptive neural plate | 1.17e-07 | 82 |
neurectoderm | 2.60e-07 | 86 |
organ system subdivision | 6.23e-07 | 223 |
pre-chordal neural plate | 9.21e-07 | 61 |