FFCP PHASE1:Hg19::chr8:72756213..72756243,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9242 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7321 | |||
|TSSclassifier=weak | |||
|UniProt=O60682 | |||
|association_with_transcript=155bp_to_AF087036_5end | |||
|coexpression_cluster_id=C2927 | |||
|description=CAGE_peak_5_at_MSC_5end | |||
|id=chr8:72756213..72756243,- | |||
|ontology_enrichment_celltype=CL:0000055!1.33e-22!180;CL:0000048!1.02e-20!430;CL:0000723!2.16e-20!436;CL:0000034!7.98e-19!444;CL:0000219!3.90e-13!390;CL:0000057!2.40e-12!75;CL:0000134!3.73e-12!358;CL:0002320!8.15e-12!365;CL:0000680!1.93e-11!57;CL:0000056!1.93e-11!57;CL:0000355!1.93e-11!57;CL:0000187!3.24e-11!54;CL:0002371!8.85e-11!591;CL:0000183!2.40e-10!59;CL:0000144!6.18e-10!625;CL:0000192!1.23e-09!42;CL:0000514!1.23e-09!42;CL:0000393!4.50e-09!60;CL:0000211!4.50e-09!60;CL:0002194!8.38e-09!63;CL:0000576!8.38e-09!63;CL:0000040!8.38e-09!63;CL:0000559!8.38e-09!63;CL:0002009!2.91e-08!65;CL:0002494!7.60e-08!16;CL:0000136!1.02e-07!15;CL:0000359!1.27e-07!32;CL:0002057!1.91e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000473;8.06e-11;39!CL:0000234;8.06e-11;39!CL:0000860;1.12e-10;33!CL:0002057;1.12e-10;33!CL:0002494;2.48e-09;16!CL:0000136;1.93e-08;13!CL:0002334;2.85e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,3.69e-29,427;CL:0000723,2.05e-28,433;CL:0000034,1.93e-27,441;CL:0000219,6.02e-23,386;CL:0000134,2.36e-21,354;CL:0002320,1.61e-20,361;CL:0000473,3.14e-12,48;CL:0000234,3.14e-12,48;CL:0000057,8.47e-12,76;CL:0002194,1.10e-11,59;CL:0000576,1.10e-11,59;CL:0000040,1.10e-11,59;CL:0000559,1.10e-11,59;CL:0002009,6.81e-11,61;CL:0000860,3.73e-10,42;CL:0002057,3.73e-10,42;CL:0000136,1.70e-09,15;CL:0002494,2.01e-09,16;CL:0000839,3.73e-09,66;CL:0000557,7.63e-09,67;CL:0002334,3.75e-08,12;CL:0000187,4.67e-08,55;CL:0000192,7.97e-08,43;CL:0000514,7.97e-08,43;CL:0000680,9.44e-08,58;CL:0000056,9.44e-08,58;CL:0000355,9.44e-08,58;CL:0000766,1.89e-07,72 | |||
|ontology_enrichment_development_v019=CL:0002057;5.83e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;1.76e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,3.43e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0002204!7.70e-15!167;UBERON:0002384!6.56e-12!375;UBERON:0001134!2.20e-11!61;UBERON:0002036!2.20e-11!61;UBERON:0003082!2.20e-11!61;UBERON:0004290!3.07e-11!70;UBERON:0002385!4.01e-11!63;UBERON:0001015!4.01e-11!63;UBERON:0000383!4.01e-11!63;UBERON:0000914!2.44e-10!83;UBERON:0002329!2.44e-10!83;UBERON:0003077!2.44e-10!83;UBERON:0003059!2.44e-10!83;UBERON:0007282!2.44e-10!83;UBERON:0009618!2.44e-10!83;UBERON:0007285!2.44e-10!83;UBERON:0000486!3.14e-08!82;UBERON:0000948!1.22e-07!24;UBERON:0005498!1.22e-07!24;UBERON:0004140!1.22e-07!24;UBERON:0009881!1.22e-07!24;UBERON:0004141!1.22e-07!24;UBERON:0003084!1.22e-07!24;UBERON:0007005!1.22e-07!24;UBERON:0004139!1.22e-07!24;UBERON:0004291!1.22e-07!24;UBERON:0007100!3.66e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0000948;5.53e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.25e-20,371;UBERON:0000926,1.76e-13,315;UBERON:0004120,1.76e-13,315;UBERON:0006603,1.76e-13,315;UBERON:0002204,2.16e-13,167;UBERON:0003081,1.11e-08,203;UBERON:0002371,6.05e-08,76;UBERON:0001134,7.60e-08,62;UBERON:0002036,7.60e-08,62;UBERON:0003082,7.60e-08,62;UBERON:0000948,1.14e-07,24;UBERON:0005498,1.14e-07,24;UBERON:0004140,1.14e-07,24;UBERON:0009881,1.14e-07,24;UBERON:0004141,1.14e-07,24;UBERON:0003084,1.14e-07,24;UBERON:0007005,1.14e-07,24;UBERON:0004139,1.14e-07,24;UBERON:0004291,1.14e-07,24;UBERON:0002329,2.42e-07,71;UBERON:0003059,2.42e-07,71;UBERON:0007282,2.42e-07,71;UBERON:0004290,2.42e-07,71;UBERON:0009618,2.42e-07,71;UBERON:0002385,2.80e-07,64;UBERON:0001015,2.80e-07,64;UBERON:0000383,2.80e-07,64;UBERON:0003077,4.32e-07,72;UBERON:0007285,4.32e-07,72;UBERON:0001474,6.11e-07,82;UBERON:0007100,7.48e-07,27;UBERON:0007524,7.55e-07,73;UBERON:0001013,8.93e-07,14;UBERON:0002405,9.29e-07,93 | |||
|phase1_expression=4.54195948176392,7.27941781229343,8.88012745804618,2.00146596706261,6.25745532198203,6.10636966870258,5.06599756336621,3.79031924056099,3.91778442299758,0.491467873003018,0,0,0.263766978228454,0,0,2.6893005858071,0.602694528023977,5.11217063271161,2.92759679274304,0,0,1.56727360739044,0,0.136874425072884,0.753255837568817,1.91033514369878,2.54511827294832,2.04648031415566,0,0,0.309632246632152,0,0,0,0,0,0,4.43196326825502,7.01905566145496,1.73608696572681,0,0.647787332037959,0.515151135268373,0.290796477559129,1.88937971844405,0.727752183563449,5.11343881192506,4.11167888021826,5.57471467611186,2.58923153089935,2.81776777182011,3.54723344832878,1.03423704220986,2.5819387343353,2.70852973188684,2.25890807451126,5.73102915121476,5.39336362668203,1.53041946185451,3.20929027076094,1.91801137739712,1.31940520074686,0.398927315243264,1.27867425159808,10.7377418292576,7.37600792098482,8.71951148593805,3.01498398308092,3.65038042894141,3.25783267057675,13.3187890579341,7.36555271975129,8.22802207346299,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0.889509253863555,0,0,0,0,0,0,0.587237189370939,0,0,3.36305137788922,0,0,0,0,0,0,0,0,0.222820913770347,0,0,0,0.512365278902701,0,0,0,0,0,0,0,0,0,0.34362744548263,0,0,0,0,0.301150238155546,0,0,0,0,0.201606743224732,0.267440195783507,0,4.87613732627923,2.01210257911091,1.91793842765295,1.0843174571537,3.00802746381534,0.869079113764942,2.3858578411533,2.91980922181582,0.189069634328136,0.665188192387692,0.614843499851882,0.72038491523742,0,0,3.8945687238562,4.87563264437948,2.92507513141503,0.715471872916026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.976248230192678,0,0,0,0,0,0,0,0,0,0,0,9.44246708221105,2.91250176828533,2.38336525463794,2.86836620748814,2.4826786753885,3.92474320099615,4.2699598291882,10.3600370335207,0.622422070799533,3.63718814588158,1.79808093424805,2.27036141467397,7.49028701823999,7.26396438684769,0.624320153660641,0,0.448346041655403,0.352303495931295,0.485618833104395,0,0.61246251376468,0.491337269247072,3.71972812232756,8.31602000097437,9.89067717114228,1.82032272387605,19.4026898290384,0.168336113954066,0.250237039743928,1.10825646193673,0.877955241761676,1.22595118319608,9.76547382892879,1.92834711372036,0.179389635688862,4.27114777637135,3.81477422087211,0,1.64884046781502,0.772921620136887,1.11670113798954,0.168776332241266,2.33848812386877,0.252433774244115,3.58994604704967,3.23292113637624,0,0.10075209822764,0.508681776931463,0,0.272746120590835,0,0,0,0,0,0,0,7.8224766164908,4.5026865673502,1.38134921352481,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0.4115740113314,7.3504355692771,0,0,0,0,0.122988438543114,0,0.219500570817251,0,0.201057944823262,0,1.62904152655162,5.19967392639789,0,0,0.234817388471643,0.433099343283221,0,0.380508304469197,0,0,2.70838706696137,6.78612368903789,5.94524649154913,0,0.839910640994298,0.283550194484773,0.179117045405697,0.290633938513962,0.383382679165211,0,0,0,0,0,6.92127047784643,4.20187268114105,7.03304683260282,6.84289784090821,2.05654985406647,0.600686115687835,7.43148724839503,0.112131084345361,1.74384027533312,0.1466765716419,4.39523833576444,3.57656445851882,0,5.31876233169741,2.08014873822732,0,0,0,2.7165818795048,0,0,1.95441710576241,2.13235169245527,0,10.2489388200259,2.61460037580088,3.39908170018994,1.2162378064119,0.502257091432126,6.32501818449095,7.90762023122223,4.59447743336456,0,0.723906533337896,0.410952645100767,2.32779252211864,2.69004345584465,0,0.215627574859517,0.513372145118994,0,0,0.773288812777695,0.335032530668698,0,0,0,0,0,0.500170521059677,0.271265023699736,4.36738809214695,5.17444067511769,3.46945313074656,2.22568688486155,1.50473049863859,2.27407504055985,6.2083842775503,2.65690239414175,0.737476674166813,1.82455590382974,0.587403472388222,2.40200396667599,0,0.862856803274467,0.320182673410333,0,0,0,9.6762045049323,1.68808170616869,7.01650236082684,12.6857757763144,2.55853624533352,11.0989205589089,4.45254199334973,2.31314540703983,4.26148140751505,1.14978018419333,2.59627214591811,1.16210378459959,0,0,0.0920809889358963,2.29628896329214,2.36718518408732,5.76947425821466,0.451199612907412,0.0770153371044148,0,0,0.422206515571503,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0.256450125116389,0.328014645699706,1.95227036798582,0.515205058238611,0,0,1.72279661398852,1.30012049207304,8.03419649220798,4.8335359146061,0.770243085573222,0.614014698904518,0.551346289938122,1.39646318328756,0.725083469571143,0.93749290157711,5.60901824574445,0.495854746082934,0.192190067365106,0,0.10115778085555,2.78907329578371,1.25924938732256,0.6970372701606,2.15623506123262,0.532306030317022,0.869932992075073,0.74129687641568,3.14874750832381,0.744316738719335,2.21465597303108,1.5250415513906,1.02359116524534,0.855877976067841,1.90921948755562,4.70969184119538,2.33834194858309,1.37268514868027,1.64937363283961,3.23491970517306,3.17020642346017,3.37006764991185,2.43816869544795,3.89941583410055,5.28250733783777,2.04749867111979,3.53513579884282,2.26016233240486,0,5.97095077717098,2.19225442626881,1.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| |||
|short_description=p5@MSC | |||
}} |
Revision as of 22:30, 22 January 2014
Short description: | p5@MSC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_MSC_5end |
Coexpression cluster: | C2927_cholangiocellular_mesenchymal_Fibroblast_CD14_glioma_Preadipocyte_Melanocyte |
Association with transcript: | 155bp_to_AF087036_5end |
EntrezGene: | MSC |
HGNC: | 7321 |
UniProt: | O60682 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 3.69e-29 | 427 |
somatic stem cell | 2.05e-28 | 433 |
stem cell | 1.93e-27 | 441 |
motile cell | 6.02e-23 | 386 |
mesenchymal cell | 2.36e-21 | 354 |
connective tissue cell | 1.61e-20 | 361 |
defensive cell | 3.14e-12 | 48 |
phagocyte | 3.14e-12 | 48 |
fibroblast | 8.47e-12 | 76 |
monopoietic cell | 1.10e-11 | 59 |
monocyte | 1.10e-11 | 59 |
monoblast | 1.10e-11 | 59 |
promonocyte | 1.10e-11 | 59 |
macrophage dendritic cell progenitor | 6.81e-11 | 61 |
classical monocyte | 3.73e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.73e-10 | 42 |
fat cell | 1.70e-09 | 15 |
cardiocyte | 2.01e-09 | 16 |
myeloid lineage restricted progenitor cell | 3.73e-09 | 66 |
granulocyte monocyte progenitor cell | 7.63e-09 | 67 |
preadipocyte | 3.75e-08 | 12 |
muscle cell | 4.67e-08 | 55 |
smooth muscle cell | 7.97e-08 | 43 |
smooth muscle myoblast | 7.97e-08 | 43 |
muscle precursor cell | 9.44e-08 | 58 |
myoblast | 9.44e-08 | 58 |
multi-potent skeletal muscle stem cell | 9.44e-08 | 58 |
myeloid leukocyte | 1.89e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.25e-20 | 371 |
mesoderm | 1.76e-13 | 315 |
mesoderm-derived structure | 1.76e-13 | 315 |
presumptive mesoderm | 1.76e-13 | 315 |
musculoskeletal system | 2.16e-13 | 167 |
lateral plate mesoderm | 1.11e-08 | 203 |
bone marrow | 6.05e-08 | 76 |
skeletal muscle tissue | 7.60e-08 | 62 |
striated muscle tissue | 7.60e-08 | 62 |
myotome | 7.60e-08 | 62 |
heart | 1.14e-07 | 24 |
primitive heart tube | 1.14e-07 | 24 |
primary heart field | 1.14e-07 | 24 |
anterior lateral plate mesoderm | 1.14e-07 | 24 |
heart tube | 1.14e-07 | 24 |
heart primordium | 1.14e-07 | 24 |
cardiac mesoderm | 1.14e-07 | 24 |
cardiogenic plate | 1.14e-07 | 24 |
heart rudiment | 1.14e-07 | 24 |
somite | 2.42e-07 | 71 |
presomitic mesoderm | 2.42e-07 | 71 |
presumptive segmental plate | 2.42e-07 | 71 |
dermomyotome | 2.42e-07 | 71 |
trunk paraxial mesoderm | 2.42e-07 | 71 |
muscle tissue | 2.80e-07 | 64 |
musculature | 2.80e-07 | 64 |
musculature of body | 2.80e-07 | 64 |
paraxial mesoderm | 4.32e-07 | 72 |
presumptive paraxial mesoderm | 4.32e-07 | 72 |
bone element | 6.11e-07 | 82 |
primary circulatory organ | 7.48e-07 | 27 |
dense mesenchyme tissue | 7.55e-07 | 73 |
adipose tissue | 8.93e-07 | 14 |
immune system | 9.29e-07 | 93 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.43e-08 | 14 |