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MCL coexpression mm9:343

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:114799630..114799648,+p@chr10:114799630..114799648
+
Mm9::chr10:95861444..95861457,+p@chr10:95861444..95861457
+
Mm9::chr11:98805740..98805771,+p@chr11:98805740..98805771
+
Mm9::chr12:85328750..85328777,+p4@Acot2
Mm9::chr12:85534937..85534948,-p10@C130039O16Rik
Mm9::chr13:112587461..112587466,+p@chr13:112587461..112587466
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Mm9::chr13:112597992..112598030,+p@chr13:112597992..112598030
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Mm9::chr15:72983928..72983956,+p@chr15:72983928..72983956
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Mm9::chr16:57471448..57471461,+p@chr16:57471448..57471461
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Mm9::chr17:71202982..71202985,-p7@Tgif1
Mm9::chr19:12870212..12870222,+p@chr19:12870212..12870222
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Mm9::chr19:53515961..53515969,-p@chr19:53515961..53515969
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Mm9::chr1:179187574..179187585,+p@chr1:179187574..179187585
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Mm9::chr2:126500931..126500953,-p@chr2:126500931..126500953
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Mm9::chr2:58013196..58013216,-p8@Cytip
Mm9::chr3:21976400..21976421,-p@chr3:21976400..21976421
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Mm9::chr3:87945689..87945693,+p@chr3:87945689..87945693
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Mm9::chr4:133176650..133176677,-p@chr4:133176650..133176677
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Mm9::chr4:140256984..140257004,-p@chr4:140256984..140257004
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Mm9::chr6:87776511..87776514,-p@chr6:87776511..87776514
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Mm9::chr7:82517026..82517029,-p@chr7:82517026..82517029
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Mm9::chrX:104284650..104284676,+p3@P2ry10


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
hematopoietic cell1.65e-2632
hematopoietic oligopotent progenitor cell1.65e-2632
hematopoietic stem cell1.65e-2632
angioblastic mesenchymal cell1.65e-2632
hematopoietic multipotent progenitor cell1.65e-2632
lymphoid lineage restricted progenitor cell6.14e-2412
mature alpha-beta T cell3.90e-229
alpha-beta T cell3.90e-229
immature T cell3.90e-229
mature T cell3.90e-229
immature alpha-beta T cell3.90e-229
lymphocyte6.76e-2213
common lymphoid progenitor6.76e-2213
T cell1.58e-2111
pro-T cell1.58e-2111
CD4-positive, alpha-beta T cell9.91e-208
hematopoietic lineage restricted progenitor cell2.16e-1925
connective tissue cell8.10e-1946
mesenchymal cell8.10e-1946
nucleate cell2.64e-1716
leukocyte3.89e-1617
nongranular leukocyte3.89e-1617
motile cell2.98e-1554
thymocyte6.34e-156
double negative thymocyte6.34e-156
naive T cell6.34e-156
double-positive, alpha-beta thymocyte6.34e-156
CD4-positive, alpha-beta thymocyte6.34e-156
naive thymus-derived CD4-positive, alpha-beta T cell6.34e-156
DN4 thymocyte6.34e-156
DN1 thymic pro-T cell6.34e-156
DN2 thymocyte6.34e-156
DN3 thymocyte6.34e-156
immature single positive thymocyte6.34e-156
early T lineage precursor6.34e-156
mature CD4 single-positive thymocyte6.34e-156
resting double-positive thymocyte6.34e-156
double-positive blast6.34e-156
CD69-positive double-positive thymocyte6.34e-156
CD69-positive, CD4-positive single-positive thymocyte6.34e-156
CD4-positive, CD8-intermediate double-positive thymocyte6.34e-156
CD24-positive, CD4 single-positive thymocyte6.34e-156
stem cell4.44e-0997
common myeloid progenitor1.52e-0819
somatic stem cell5.33e-0791
multi fate stem cell5.33e-0791

Uber Anatomy
Ontology termp-valuen
hemolymphoid system5.73e-2648
immune system5.73e-2648
hematopoietic system1.01e-2545
blood island1.01e-2545
hemopoietic organ2.63e-2329
immune organ2.63e-2329
thymus2.16e-2123
neck2.16e-2123
respiratory system epithelium2.16e-2123
hemolymphoid system gland2.16e-2123
pharyngeal epithelium2.16e-2123
thymic region2.16e-2123
pharyngeal gland2.16e-2123
entire pharyngeal arch endoderm2.16e-2123
thymus primordium2.16e-2123
early pharyngeal endoderm2.16e-2123
mixed endoderm/mesoderm-derived structure8.14e-2135
pharynx2.41e-2024
gland of gut2.41e-2024
upper respiratory tract2.41e-2024
chordate pharynx2.41e-2024
pharyngeal arch system2.41e-2024
pharyngeal region of foregut2.41e-2024
connective tissue8.10e-1946
segment of respiratory tract1.15e-1727
organ segment8.88e-1335
lateral plate mesoderm1.04e-1287
craniocervical region2.54e-1236
respiratory tract7.59e-1241
respiratory system1.80e-1142
anterior region of body9.99e-1043
gut epithelium6.37e-0855
mesoderm1.54e-07120
mesoderm-derived structure1.54e-07120
presumptive mesoderm1.54e-07120
foregut2.15e-0780
endocrine gland5.90e-0760


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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