FF:11517-119H5: Difference between revisions

Latest revision as of 18:05, 4 June 2020

Name:	Renal Epithelial Cells, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11332
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	kidney
dev stage	NA
sex	NA
age	NA
cell type	epithelial cell of kidney
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	SC4125
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005877

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11332		CAGE		DRX008427		DRR009299

Accession ID Hg19

Library id		BAM		CTSS
CNhs11332		DRZ000724		DRZ002109

Accession ID Hg38

Library id		BAM		CTSS
CNhs11332		DRZ012074		DRZ013459

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005877

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10011.CCGTCC		sRNA-Seq		DRX037176		DRR041542

Accession ID Hg19

Library id		BAM		CTSS
SRhi10011.CCGTCC		DRZ007184

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0806
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0475
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0379
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.352
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0843
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.153
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.224
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.13
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.251
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.889
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.637
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11332

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.514
MA0003.1	MA0003.1	0.41
MA0004.1	MA0004.1	0.231
MA0006.1	MA0006.1	0.137
MA0007.1	MA0007.1	0.131
MA0009.1	MA0009.1	1
MA0014.1	MA0014.1	0.664
MA0017.1	MA0017.1	0.396
MA0018.2	MA0018.2	0.15
MA0019.1	MA0019.1	0.0341
MA0024.1	MA0024.1	0.0133
MA0025.1	MA0025.1	0.0424
MA0027.1	MA0027.1	0.443
MA0028.1	MA0028.1	0.494
MA0029.1	MA0029.1	0.441
MA0030.1	MA0030.1	0.868
MA0031.1	MA0031.1	0.268
MA0035.2	MA0035.2	0.134
MA0038.1	MA0038.1	4.41426e-4
MA0039.2	MA0039.2	0.0221
MA0040.1	MA0040.1	0.597
MA0041.1	MA0041.1	0.181
MA0042.1	MA0042.1	0.599
MA0043.1	MA0043.1	0.931
MA0046.1	MA0046.1	1.68027e-14
MA0047.2	MA0047.2	0.506
MA0048.1	MA0048.1	0.69
MA0050.1	MA0050.1	0.0012
MA0051.1	MA0051.1	0.0925
MA0052.1	MA0052.1	0.0877
MA0055.1	MA0055.1	0.00357
MA0057.1	MA0057.1	0.492
MA0058.1	MA0058.1	0.281
MA0059.1	MA0059.1	0.869
MA0060.1	MA0060.1	5.80189e-14
MA0061.1	MA0061.1	0.623
MA0062.2	MA0062.2	0.261
MA0065.2	MA0065.2	0.825
MA0066.1	MA0066.1	0.681
MA0067.1	MA0067.1	0.13
MA0068.1	MA0068.1	0.993
MA0069.1	MA0069.1	0.654
MA0070.1	MA0070.1	4.95692e-4
MA0071.1	MA0071.1	0.682
MA0072.1	MA0072.1	0.748
MA0073.1	MA0073.1	0.948
MA0074.1	MA0074.1	0.648
MA0076.1	MA0076.1	0.215
MA0077.1	MA0077.1	0.024
MA0078.1	MA0078.1	0.715
MA0079.2	MA0079.2	0.244
MA0080.2	MA0080.2	6.50161e-4
MA0081.1	MA0081.1	0.119
MA0083.1	MA0083.1	0.00296
MA0084.1	MA0084.1	0.306
MA0087.1	MA0087.1	0.828
MA0088.1	MA0088.1	0.962
MA0090.1	MA0090.1	0.00582
MA0091.1	MA0091.1	0.361
MA0092.1	MA0092.1	0.38
MA0093.1	MA0093.1	0.228
MA0099.2	MA0099.2	0.0142
MA0100.1	MA0100.1	0.249
MA0101.1	MA0101.1	0.698
MA0102.2	MA0102.2	0.0253
MA0103.1	MA0103.1	0.00463
MA0104.2	MA0104.2	0.518
MA0105.1	MA0105.1	0.0744
MA0106.1	MA0106.1	0.158
MA0107.1	MA0107.1	0.563
MA0108.2	MA0108.2	4.20113e-10
MA0111.1	MA0111.1	0.0598
MA0112.2	MA0112.2	0.761
MA0113.1	MA0113.1	0.676
MA0114.1	MA0114.1	0.883
MA0115.1	MA0115.1	0.689
MA0116.1	MA0116.1	0.131
MA0117.1	MA0117.1	0.4
MA0119.1	MA0119.1	0.0948
MA0122.1	MA0122.1	0.942
MA0124.1	MA0124.1	0.679
MA0125.1	MA0125.1	0.332
MA0131.1	MA0131.1	0.496
MA0135.1	MA0135.1	0.123
MA0136.1	MA0136.1	0.00479
MA0137.2	MA0137.2	0.854
MA0138.2	MA0138.2	0.887
MA0139.1	MA0139.1	0.845
MA0140.1	MA0140.1	0.724
MA0141.1	MA0141.1	0.705
MA0142.1	MA0142.1	0.63
MA0143.1	MA0143.1	0.206
MA0144.1	MA0144.1	0.731
MA0145.1	MA0145.1	0.283
MA0146.1	MA0146.1	0.0668
MA0147.1	MA0147.1	0.495
MA0148.1	MA0148.1	0.507
MA0149.1	MA0149.1	0.575
MA0150.1	MA0150.1	0.453
MA0152.1	MA0152.1	0.0673
MA0153.1	MA0153.1	1.81872e-7
MA0154.1	MA0154.1	0.73
MA0155.1	MA0155.1	0.158
MA0156.1	MA0156.1	0.138
MA0157.1	MA0157.1	0.16
MA0159.1	MA0159.1	0.851
MA0160.1	MA0160.1	0.731
MA0162.1	MA0162.1	0.293
MA0163.1	MA0163.1	0.127
MA0164.1	MA0164.1	0.965
MA0258.1	MA0258.1	0.395
MA0259.1	MA0259.1	0.376

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11332

Novel motif	Logo	P-value
1	1	0.0543
10	10	0.0073
100	100	0.473
101	101	0.0411
102	102	0.478
103	103	0.177
104	104	0.489
105	105	0.182
106	106	0.864
107	107	0.334
108	108	0.731
109	109	0.727
11	11	0.731
110	110	0.833
111	111	0.21
112	112	0.212
113	113	0.0737
114	114	0.0105
115	115	0.918
116	116	0.697
117	117	0.24
118	118	0.859
119	119	0.622
12	12	0.478
120	120	0.744
121	121	0.467
122	122	0.212
123	123	0.00227
124	124	0.211
125	125	0.195
126	126	0.929
127	127	0.238
128	128	0.589
129	129	0.263
13	13	0.897
130	130	0.0398
131	131	0.187
132	132	0.147
133	133	0.142
134	134	0.78
135	135	0.321
136	136	0.153
137	137	0.0643
138	138	0.0362
139	139	0.0122
14	14	0.566
140	140	0.227
141	141	0.076
142	142	0.708
143	143	0.404
144	144	0.705
145	145	0.768
146	146	0.0987
147	147	0.748
148	148	0.0128
149	149	0.686
15	15	0.189
150	150	0.474
151	151	0.749
152	152	0.107
153	153	0.0456
154	154	0.109
155	155	0.897
156	156	0.504
157	157	0.548
158	158	0.255
159	159	0.611
16	16	0.465
160	160	0.383
161	161	0.572
162	162	0.461
163	163	0.597
164	164	0.129
165	165	0.122
166	166	0.76
167	167	0.0482
168	168	0.33
169	169	0.445
17	17	0.918
18	18	0.326
19	19	0.731
2	2	0.51
20	20	0.977
21	21	0.337
22	22	0.378
23	23	0.593
24	24	0.917
25	25	0.343
26	26	0.541
27	27	0.69
28	28	0.243
29	29	0.312
3	3	0.0657
30	30	0.0528
31	31	0.61
32	32	0.341
33	33	0.279
34	34	0.408
35	35	0.0275
36	36	0.674
37	37	0.824
38	38	0.918
39	39	0.694
4	4	0.525
40	40	0.0357
41	41	0.409
42	42	0.234
43	43	0.184
44	44	0.507
45	45	0.309
46	46	0.396
47	47	0.551
48	48	0.986
49	49	0.111
5	5	0.143
50	50	0.317
51	51	0.871
52	52	0.714
53	53	0.149
54	54	0.957
55	55	0.0574
56	56	0.652
57	57	0.308
58	58	0.0767
59	59	0.237
6	6	0.228
60	60	0.631
61	61	0.766
62	62	0.0116
63	63	0.869
64	64	0.968
65	65	0.384
66	66	0.141
67	67	0.541
68	68	0.312
69	69	0.166
7	7	0.471
70	70	0.0798
71	71	0.0872
72	72	0.328
73	73	0.108
74	74	0.186
75	75	0.142
76	76	0.0637
77	77	0.406
78	78	0.489
79	79	0.207
8	8	0.844
80	80	0.495
81	81	0.025
82	82	0.0635
83	83	0.787
84	84	0.426
85	85	0.142
86	86	0.411
87	87	0.0986
88	88	0.81
89	89	0.847
9	9	0.734
90	90	0.00106
91	91	0.54
92	92	0.0408
93	93	0.633
94	94	0.0793
95	95	0.961
96	96	0.198
97	97	0.927
98	98	0.387
99	99	0.0221

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11332

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000151 human renal epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
1000494 (nephron tubule epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0007684 (uriniferous tubule)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000151 (human renal epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008319
+|DRA_sample_Accession=CAGE@SAMD00005877
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005877
+|accession_numbers=CAGE;DRX008427;DRR009299;DRZ000724;DRZ002109;DRZ012074;DRZ013459
+|accession_numbers_RNASeq=sRNA-Seq;DRX037176;DRR041542;DRZ007184
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0004810,UBERON:0001285,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0007684,UBERON:0000916
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:1000497,CL:0002518,CL:1000449,CL:1000507,CL:1000494
@@ Line 8: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.30!197.66!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!2.28!188.24!HNF1B;;chr1:201979703..201979721,+!p2@ELF3!2.08!120.01!ELF3;;chr17:46703687..46703740,-!p1@HOXB9!2.06!113.73!HOXB9;;chr1:201979743..201979762,+!p1@ELF3!1.98!94.12!ELF3;;chr17:46682321..46682362,-!p1@HOXB6!1.75!54.90!HOXB6;;chr6:134210243..134210257,+!p1@TCF21!1.67!45.49!TCF21;;chr16:86600426..86600441,+!p1@FOXC2!1.65!105.10!FOXC2;;chr7:27153454..27153469,-!p2@HOXA3!1.60!38.43!HOXA3;;chr6:34204921..34204939,+!p3@HMGA1!1.56!995.34!HMGA1;;chr7:27205136..27205164,-!p1@HOXA9!1.52!32.16!HOXA9;;chr17:35294075..35294102,+!p1@ENST00000559335!1.47!28.24!LHX1;;chr11:61520075..61520136,+!p1@C11orf9!1.46!57.26!C11orf9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.45!27.45!HOXC5;;chr17:46622205..46622218,-!p3@HOXB2!1.42!29.02!HOXB2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.42!25.10!POU3F3;;chr19:45260775..45260838,+!p5@BCL3!1.39!30.59!BCL3;;chr21:38071430..38071456,+!p1@SIM2!1.39!23.53!SIM2;;chr20:42295745..42295765,+!p1@MYBL2!1.37!349.82!MYBL2;;chr10:102505493..102505546,+!p2@PAX2!1.36!21.96!PAX2;;chr6:34204672..34204692,+!p1@HMGA1!1.35!2298.14!HMGA1;;chr20:42295713..42295738,+!p2@MYBL2!1.35!123.14!MYBL2;;chr7:27196217..27196246,-!p2@HOXA7!1.31!19.61!HOXA7;;chr7:27205106..27205134,-!p2@HOXA9!1.31!19.61!HOXA9;;chr17:46703826..46703845,-!p3@HOXB9!1.30!18.82!HOXB9;;chr5:2751762..2751784,-!p1@IRX2!1.26!17.26!IRX2;;chr5:72744594..72744609,-!p1@FOXD1!1.22!70.59!FOXD1;;chr7:27224795..27224840,-!p2@HOXA11!1.20!14.90!HOXA11;;chr7:27224842..27224872,-!p1@HOXA11!1.20!14.90!HOXA11;;chr17:41623692..41623715,-!p1@ETV4!1.18!59.61!ETV4;;chr12:66218255..66218304,+!p3@HMGA2!1.18!37.65!HMGA2;;chr1:209979467..209979494,-!p1@IRF6!1.18!15.69!IRF6;;chr11:32457075..32457095,-!p1@WT1!1.18!14.12!WT1;;chr17:46690839..46690884,-!p1@HOXB8!1.18!14.12!HOXB8;;chr19:17356436..17356481,-!p3@NR2F6!1.17!23.53!NR2F6;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.17!14.90!GLIS1;;chr17:46622229..46622257,-!p6@HOXB2!1.16!15.69!HOXB2;;chr7:27192185..27192209,-!p1@HOXA3!1.16!13.33!HOXA3;;chr12:54378923..54378966,+!p1@HOXC10!1.16!13.33!HOXC10;;chr12:54393880..54393962,+!p1@HOXC9!1.16!13.33!HOXC9;;chr20:31350184..31350200,+!p1@DNMT3B!1.13!25.88!DNMT3B;;chr20:50721803..50721857,-!p2@ZFP64!1.11!18.82!ZFP64;;chr5:3595934..3595957,+!p2@IRX1!1.11!11.77!IRX1;;chr17:46675558..46675577,-!p2@HOXB6!1.11!11.77!HOXB6;;chr2:5832508..5832524,+!p1@SOX11!1.11!11.77!SOX11;;chr2:176987441..176987454,+!p1@HOXD9!1.08!10.98!HOXD9;;chr2:176994408..176994492,+!p1@HOXD8!1.08!10.98!HOXD8;;chr7:27170359..27170381,-!p1@HOXA4!1.08!10.98!HOXA4;;chr7:27213893..27213954,-!p1@HOXA10!1.08!10.98!HOXA10;;chr17:46667594..46667619,-!p1@HOXB3!1.08!10.98!HOXB3;;chr12:3069037..3069119,+!p2@TEAD4!1.06!36.86!TEAD4;;chr17:41622765..41622821,-!p2@ETV4!1.05!15.69!ETV4;;chr16:54964740..54964789,+!p1@IRX5!1.05!14.90!IRX5;;chr17:36105074..36105086,-!p2@HNF1B!1.05!10.20!HNF1B;;chr10:102505327..102505344,+!p1@PAX2!1.05!10.20!PAX2;;chr3:52001448..52001478,-!p2@PCBP4!1.04!139.61!PCBP4;;chr11:65667846..65667868,-!p1@FOSL1!1.03!260.40!FOSL1;;chr17:38465413..38465438,+!p5@RARA!1.03!15.69!RARA;;chr11:65667884..65667895,-!p2@FOSL1!1.02!37.65!FOSL1;;chr6:10415276..10415341,-!p2@TFAP2A!1.02!11.77!TFAP2A;;chr5:3595977..3595999,+!p1@IRX1!1.02!9.41!IRX1;;chr16:51185172..51185197,-!p1@SALL1!1.02!9.41!SALL1;;chr17:7493405..7493419,-!p1@SOX15!1.02!9.41!SOX15;;chr2:177053386..177053402,+!p1@HOXD1!1.02!9.41!HOXD1;;chr5:72744445..72744466,-!p2@FOXD1!1.01!15.69!FOXD1;;chr7:44143925..44143970,+!p1@AEBP1!0.99!202.36!AEBP1;;chr3:52001426..52001447,-!p3@PCBP4!0.99!25.10!PCBP4;;chr3:69811858..69811881,+!p5@MITF!0.98!8.63!MITF;;chr7:27153428..27153440,-!p3@HOXA3!0.98!8.63!HOXA3;;chr16:86600870..86600921,+!p2@FOXC2!0.98!8.63!FOXC2;;chr12:54379029..54379057,+!p2@HOXC10!0.98!8.63!HOXC10;;chr19:49865646..49865718,-!p1@TEAD2!0.96!71.38!TEAD2;;chr12:2986206..2986258,-!p2@FOXM1!0.96!50.20!FOXM1;;chr2:239148671..239148686,-!p1@HES6!0.96!30.59!HES6;;chr14:21994337..21994442,-!p1@SALL2!0.96!22.75!SALL2;;chr17:41623009..41623053,-!p4@ETV4!0.96!13.33!ETV4;;chr16:54320158..54320200,-!p5@IRX3!0.96!11.77!IRX3;;chr17:46622070..46622109,-!p1@HOXB2!0.95!18.04!HOXB2;;chr21:38071403..38071428,+!p2@SIM2!0.95!7.84!SIM2;;chr6:50786591..50786614,+!p1@TFAP2B!0.95!7.84!TFAP2B;;chr7:27196267..27196311,-!p1@HOXA7!0.95!7.84!HOXA7;;chr17:70117153..70117174,+!p1@SOX9!0.94!82.36!SOX9;;chr3:52001396..52001425,-!p4@PCBP4!0.94!14.12!PCBP4;;chr12:66218003..66218018,+!p9@HMGA2!0.94!9.41!HMGA2;;chr17:46622440..46622477,-!p5@HOXB2!0.94!8.63!HOXB2;;chr1:935467..935484,-!p1@HES4!0.93!34.51!HES4;;chr16:54320675..54320715,-!p1@IRX3!0.93!16.47!IRX3;;chr12:54447599..54447630,+!p3@HOXC4!0.93!9.41!HOXC4;;chr7:28448965..28448994,+!p2@CREB5!0.92!26.67!CREB5;;chr11:63684602..63684664,-!p1@RCOR2!0.92!14.90!RCOR2;;chr16:86600458..86600461,+!p3@FOXC2!0.91!7.06!FOXC2;;chr17:46667561..46667572,-!p4@HOXB3!0.91!7.06!HOXB3;;chr2:122042770..122042785,-!p1@TFCP2L1!0.91!7.06!TFCP2L1;;chr3:69811882..69811898,+!p6@MITF!0.91!7.06!MITF;;chr16:8962853..8962878,-!p1@CARHSP1!0.90!429.04!CARHSP1;;chr16:29817789..29817838,+!p2@MAZ!0.90!98.04!MAZ;;chr17:46688334..46688385,-!p1@HOXB7!0.90!10.20!HOXB7;;chr12:66218183..66218209,+!p4@HMGA2!0.89!13.33!HMGA2;;chr6:34204642..34204664,+!p2@HMGA1!0.88!938.08!HMGA1;;chr12:2986275..2986363,-!p1@FOXM1!0.88!69.02!FOXM1;;chr19:19516464..19516492,+!p4@GATAD2A!0.88!34.51!GATAD2A;;chr6:1610293..1610310,+!p1@FOXC1!0.87!10.98!FOXC1;;chr17:41622834..41622883,-!p6@ETV4!0.87!7.84!ETV4;;chr20:32274179..32274213,-!p1@E2F1!0.86!43.92!E2F1;;chr11:65686952..65686975,+!p5@DRAP1!0.86!36.08!DRAP1;;chr22:41697497..41697515,+!p2@ZC3H7B!0.86!18.04!ZC3H7B;;chr11:46299539..46299620,+!p2@CREB3L1!0.86!10.98!CREB3L1;;chr10:102505954..102505973,+!p3@PAX2!0.86!6.27!PAX2;;chr17:46667628..46667642,-!p2@HOXB3!0.86!6.27!HOXB3;;chr17:46671504..46671541,-!p2@HOXB5!0.86!6.27!HOXB5;;chr17:46692318..46692362,-!p5@HOXB8!0.86!6.27!HOXB8;;chr7:27196196..27196210,-!p5@HOXA7!0.86!6.27!HOXA7;;chr7:27219754..27219759,-!p16@HOXA10!0.86!6.27!HOXA10;;chr2:176969228..176969260,+!p1@HOXD11!0.86!6.27!HOXD11;;chr6:41514078..41514158,+!p1@FOXP4!0.85!58.83!FOXP4;;chr17:7492684..7492778,-!p2@SOX15!0.85!13.33!SOX15;;chr17:41622925..41622976,-!p3@ETV4!0.85!9.41!ETV4;;chr15:83953397..83953425,-!p1@BNC1!0.85!7.06!BNC1;;chr15:67357924..67357952,+!p2@SMAD3!0.84!42.35!SMAD3;;chr5:176738887..176738934,-!p1@MXD3!0.84!42.35!MXD3;;chr16:29818160..29818188,+!p6@MAZ!0.84!29.81!MAZ;;chr12:66218598..66218645,+!p2@HMGA2!0.84!29.02!HMGA2;;chr8:145669791..145669834,-!p1@TONSL!0.84!18.04!TONSL;;chr16:8962544..8962584,-!p2@CARHSP1!0.84!14.12!CARHSP1;;chr16:54320101..54320125,-!p4@IRX3!0.84!8.63!IRX3;;chr17:3571887..3571918,-!p2@TAX1BP3!0.83!69.81!TAX1BP3;;chr14:61116183..61116208,-!p1@SIX1!0.83!23.53!SIX1;;chr6:34204973..34204990,+!p4@HMGA1!0.82!80.79!HMGA1;;chr11:46299199..46299233,+!p1@CREB3L1!0.82!31.37!CREB3L1;;chr1:8938766..8938774,-!p2@ENO1!0.81!406.29!ENO1;;chr7:44143738..44143760,+!p4@AEBP1!0.81!6.27!AEBP1;;chr5:3595961..3595975,+!p3@IRX1!0.81!5.49!IRX1;;chr7:27219833..27219845,-!p7@HOXA10!0.81!5.49!HOXA10;;chr11:32457413..32457431,-!p2@WT1!0.81!5.49!WT1;;chr17:46692457..46692484,-!p2@HOXB8!0.81!5.49!HOXB8;;chr17:46692624..46692659,-!p3@HOXB8!0.81!5.49!HOXB8;;chr2:45236540..45236577,-!p1@SIX2!0.81!5.49!SIX2;;chr9:4300050..4300118,-!p1@GLIS3!0.79!36.86!GLIS3;;chr11:65686802..65686818,+!p6@DRAP1!0.79!9.41!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!0.79!7.84!HMGA2;;chr20:50159198..50159299,-!p1@NFATC2!0.79!7.84!NFATC2;;chr8:128748308..128748324,+!p2@MYC!0.78!153.73!MYC;;chr16:29817841..29817865,+!p1@MAZ!0.78!116.87!MAZ;;chr19:59031131..59031193,-!p1@ZBTB45!0.78!71.38!ZBTB45;;chr12:124873852..124873881,-!p3@NCOR2!0.78!32.94!NCOR2;;chr19:45252008..45252024,+!p2@BCL3!0.78!18.04!BCL3;;chr17:3571863..3571881,-!p1@TAX1BP3!0.77!380.41!TAX1BP3;;chr19:46271505..46271575,-!p2@SIX5!0.77!13.33!SIX5;;chr19:57183114..57183145,-!p1@ZNF835!0.77!5.49!ZNF835;;chr19:56652643..56652683,+!p1@ZNF444!0.76!28.24!ZNF444;;chr10:48355030..48355090,+!p1@ZNF488!0.76!6.27!ZNF488;;chr1:54203698..54203719,-!p@chr1:54203698..54203719,-!0.76!4.71!GLIS1;;chr16:51185573..51185593,-!p3@SALL1!0.76!4.71!SALL1;;chr16:54964899..54964914,+!p2@IRX5!0.76!4.71!IRX5;;chr17:41622731..41622764,-!p5@ETV4!0.76!4.71!ETV4;;chr17:46703212..46703238,-!p2@HOXB9!0.76!4.71!HOXB9;;chr5:2751785..2751808,-!p2@IRX2!0.76!4.71!IRX2;;chr6:34210478..34210481,+!p8@HMGA1!0.76!4.71!HMGA1;;chr7:27183291..27183324,-!p1@HOXA5!0.76!4.71!HOXA5;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.76!4.71!POU3F3;;chr2:176987463..176987479,+!p2@HOXD9!0.76!4.71!HOXD9;;chr2:177016272..177016286,+!p2@HOXD4!0.76!4.71!HOXD4;;chr2:177016336..177016350,+!p1@HOXD4!0.76!4.71!HOXD4;;chr2:45236579..45236596,-!p2@SIX2!0.76!4.71!SIX2;;chr4:299227..299272,-!p1@ZNF732!0.76!4.71!ZNF732;;chr10:135122380..135122458,+!p1@ZNF511!0.75!157.65!ZNF511;;chr19:45251943..45252006,+!p1@BCL3!0.75!134.91!BCL3;;chr19:1863591..1863611,-!p2@KLF16!0.75!49.41!KLF16;;chr19:19516507..19516539,+!p7@GATAD2A!0.75!14.90!GATAD2A;;chr17:46675420..46675465,-!p3@HOXB6!0.75!5.49!HOXB6;;chr19:6424783..6424802,-!p2@KHSRP!0.74!101.18!KHSRP;;chr2:242576460..242576600,-!p1@THAP4!0.74!75.30!THAP4;;chr11:65687362..65687436,+!p3@DRAP1!0.74!22.75!DRAP1;;chr16:29818199..29818216,+!p11@MAZ!0.74!7.84!MAZ;;chr2:25475120..25475176,-!p2@DNMT3A!0.74!6.27!DNMT3A;;chr17:38498510..38498540,+!p7@RARA!0.74!5.49!RARA;;chr19:6424813..6424835,-!p1@KHSRP!0.73!304.33!KHSRP;;chr19:1863568..1863586,-!p1@KLF16!0.73!159.22!KLF16;;chr19:3572925..3573014,+!p1@HMG20B!0.73!144.32!HMG20B;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.73!49.41!GLIS2;;chr11:65686732..65686756,+!p2@DRAP1!0.73!20.39!DRAP1;;chr14:21994449..21994524,-!p2@SALL2!0.73!14.12!SALL2;;chr12:66218378..66218401,+!p6@HMGA2!0.73!7.06!HMGA2;;chr19:49864746..49864780,-!p2@TEAD2!0.73!6.27!TEAD2;;chr12:132628963..132629027,+!p1@NOC4L!0.72!69.02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6873984..96873999,+!p3@NR2F2!0.27!11.77!NR2F2;;chr19:58978418..58978456,+!p1@ZNF324!0.27!9.41!ZNF324;;chr13:45151259..45151326,-!p2@TSC22D1!0.27!9.41!TSC22D1;;chr1:45805813..45805859,+!p1@TOE1!0.27!7.06!TOE1;;chr19:19496624..19496660,+!p3@GATAD2A!0.27!7.06!GATAD2A;;chr16:31085514..31085576,-!p1@ZNF668!0.27!6.27!ZNF668;;chr6:35227282..35227330,+!p2@ZNF76!0.27!5.49!ZNF76;;chr1:8483756..8483809,-!p5@RERE!0.27!3.92!RERE;;chr1:35656397..35656455,-!p3@SFPQ!0.27!3.14!SFPQ;;chr15:74833584..74833626,+!p1@ARID3B!0.27!3.14!ARID3B;;chr6:31869828..31869880,-!p1@ZBTB12!0.27!2.35!ZBTB12;;chr2:46524506..46524514,+!p5@EPAS1!0.27!2.35!EPAS1;;chr3:126076264..126076305,-!p2@KLF15!0.27!1.57!KLF15;;chr15:57210692..57210713,-!p5@ZNF280D!0.27!1.57!ZNF280D;;chr19:18391652..18391669,-!p8@JUND!0.27!1.57!JUND;;chr12:125002827..125002855,-!p5@NCOR2!0.27!1.57!NCOR2;;chr19:45261992..45262010,+!p9@BCL3!0.27!1.57!BCL3;;chr12:108154891..108154923,-!p1@PRDM4!0.26!14.12!PRDM4;;chr1:44679113..44679152,+!p1@DMAP1!0.26!12.55!DMAP1;;chr2:208031542..208031595,-!p2@KLF7!0.26!10.98!KLF7;;chr12:96588279..96588299,+!p4@ELK3!0.26!7.06!ELK3;;chr12:122516626..122516645,+!p2@MLXIP!0.26!3.92!MLXIP;;chr8:145159447..145159458,+!p4@MAF1!0.26!3.14!MAF1;;chr12:53853054..53853092,+!p6@PCBP2!0.26!2.35!PCBP2;;chr16:79633894..79633954,-!p3@MAF!0.26!2.35!MAF;;chr19:22235279..22235301,+!p1@ZNF257!0.26!2.35!ZNF257;;chr12:49445907..49445923,-!p2@MLL2!0.26!1.57!MLL2;;chr12:80085255..80085284,-!p9@PAWR!0.26!1.57!PAWR;;chr20:48807648..48807671,+!p9@CEBPB!0.26!1.57!CEBPB;;chr8:80679993..80680011,-!p1@HEY1!0.26!1.57!HEY1;;chrX:131623932..131623964,-!p7@MBNL3!0.26!1.57!MBNL3;;chr1:33722080..33722172,+!p1@ZNF362!0.25!29.02!ZNF362;;chr16:3451184..3451264,+!p1@ZNF174!0.25!16.47!ZNF174;;chr12:125052112..125052172,-!p2@NCOR2!0.25!14.12!NCOR2;;chr12:56512026..56512064,+!p1@ZC3H10,p2@ESYT1!0.25!14.12!ZC3H10;;chr14:102786063..102786112,+!p1@ZNF839!0.25!10.98!ZNF839;;chr1:204042233..204042249,+!p1@SOX13!0.25!9.41!SOX13;;chr12:80084333..80084380,-!p4@PAWR!0.25!7.06!PAWR;;chrX:48900899..48900917,-!p2@TFE3!0.25!6.27!TFE3;;chr2:217277480..217277505,+!p2@SMARCAL1!0.25!4.71!SMARCAL1;;chr4:1873011..1873063,+!p2@WHSC1!0.25!4.71!WHSC1;;chr22:46546406..46546440,+!p1@PPARA!0.25!3.14!PPARA;;chr2:242576431..242576458,-!p3@THAP4!0.25!3.14!THAP4;;chr17:61919985..61920012,-!p3@SMARCD2!0.25!3.14!SMARCD2;;chr15:37390850..37390909,-!p3@MEIS2!0.25!2.35!MEIS2;;chr19:6280007..6280019,-!p3@MLLT1!0.25!2.35!MLLT1;;chr12:53614155..53614187,-!p3@RARG!0.25!2.35!RARG;;chr12:66218573..66218596,+!p7@HMGA2!0.25!1.57!HMGA2;;chr2:166326200..166326216,+!p1@CSRNP3!0.25!1.57!CSRNP3;;chr19:3366625..3366629,+!p4@NFIC!0.25!1.57!NFIC;;chrX:152599579..152599595,+!p2@ZNF275!0.25!1.57!ZNF275;;chr6:43139248..43139261,+!p4@SRF!0.25!1.57!SRF;;chr8:67525443..67525459,-!p2@MYBL1!0.25!1.57!MYBL1;;chr5:124082428..124082439,-!p16@ZNF608!0.25!0.78!ZNF608;;chr5:124082525..124082536,-!p10@ZNF608!0.25!0.78!ZNF608;;chr5:124082548..124082571,-!p9@ZNF608!0.25!0.78!ZNF608;;chr5:124084466..124084484,-!p6@ZNF608!0.25!0.78!ZNF608;;chr5:124084526..124084532,-!p17@ZNF608!0.25!0.78!ZNF608;;chr5:139492456..139492489,+!p7@PURA!0.25!0.78!PURA;;chr5:1882184..1882203,-!p4@IRX4!0.25!0.78!IRX4;;chr5:1887070..1887114,-!p1@IRX4!0.25!0.78!IRX4;;chr5:3596206..3596210,+!p4@IRX1!0.25!0.78!IRX1;;chr5:92922831..92922864,+!p14@NR2F1!0.25!0.78!NR2F1;;chr6:100912752..100912778,-!p2@SIM1!0.25!0.78!SIM1;;chr6:10412576..10412599,-!p5@TFAP2A!0.25!0.78!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!0.25!0.78!TFAP2A;;chr6:10419768..10419819,-!p6@TFAP2A!0.25!0.78!TFAP2A;;chr6:10419884..10419898,-!p11@TFAP2A!0.25!0.78!TFAP2A;;chr6:126070748..126070768,+!p2@HEY2!0.25!0.78!HEY2;;chr6:135502472..135502489,+!p3@MYB!0.25!0.78!MYB;;
+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 38: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11332.11517-119H5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11332.11517-119H5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11332.11517-119H5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11332.11517-119H5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11332.11517-119H5.hg38.nobarcode.ctss.bed.gz
 |id=FF:11517-119H5
 |is_a=EFO:0002091;;FF:0000151
 |is_obsolete=
-|library_ids=CNhs11332
+|library_id=CNhs11332
+|library_id_phase_based=2:CNhs11332
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11517
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.CCGTCC.11517
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11517
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.CCGTCC.11517
 |name=Renal Epithelial Cells, donor1
 |namespace=FANTOM5
@@ Line 47: / Line 64: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11332,LSID768,release014,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10011,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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@@ Line 63: / Line 81: @@
 |rna_tube_id=119H5
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10011.CCGTCC
 |sample_age=
 |sample_category=primary cells
@@ Line 86: / Line 105: @@
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 |xref=
-}} {{DRAAccessionNumbers
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11517-119H5;search_select_hide=table117:FF:11517-119H5
-|DRA_sample_Accession=CAGE@DRS008319
-|accession_numbers=DRX008427;DRR009299;DRZ000724;DRZ002109;CAGE
-|library_id=CNhs11332
 }}

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FF:11517-119H5: Difference between revisions

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Latest revision as of 18:05, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0