FF:12230-129F7: Difference between revisions

Latest revision as of 18:35, 4 June 2020

Name:	Lgr5 positive intestinal stem cells, pool3
Species:	Mouse (Mus musculus)
Library ID:	CNhs12557
Sample type:	primary cells
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	small intestine
dev stage	NA
sex	female
age	NA
cell type	stem cell
cell line	NA
company	NA
collaboration	Marc van de Wetering
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005546

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12557		CAGE		DRX008771		DRR009643

Accession ID Mm9

Library id		BAM		CTSS
CNhs12557		DRZ001068		DRZ002453

Accession ID Mm10

Library id		BAM		CTSS
CNhs12557		DRZ012418		DRZ013803

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs12557

0	0
1	0
10	0
100	0
1000	-0.0355
1001	-0.0749
1002	-0.116
1003	-0.143
1004	0
1005	0.0807
1006	-0.147
1007	-0.125
1008	1.102
1009	-0.19
101	0.128
1010	0
1011	-0.188
1012	0
1013	0.021
1014	-0.0874
1015	-0.164
1016	-0.465
1017	0
1018	0.259
1019	0
102	0
1020	0
1021	0
1022	0.111
1023	0
1024	-0.14
1025	-0.00846
1026	0
1027	-0.048
1028	0
1029	-0.176
103	-0.0887
1030	0
1031	-1.044
1032	0.317
1033	0.436
1034	0
1035	0
1036	0.494
1037	0
1038	-0.101
1039	0.177
104	0
1040	-0.711
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12557

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.446
MA0003.1	MA0003.1	0.845
MA0004.1	MA0004.1	0.00816
MA0006.1	MA0006.1	0.943
MA0007.1	MA0007.1	0.101
MA0009.1	MA0009.1	0.232
MA0014.1	MA0014.1	0.0715
MA0017.1	MA0017.1	2.29387e-12
MA0018.2	MA0018.2	1.5081e-6
MA0019.1	MA0019.1	0.608
MA0024.1	MA0024.1	4.29108e-6
MA0025.1	MA0025.1	0.0145
MA0027.1	MA0027.1	0.152
MA0028.1	MA0028.1	5.33992e-9
MA0029.1	MA0029.1	0.166
MA0030.1	MA0030.1	0.351
MA0031.1	MA0031.1	0.142
MA0035.2	MA0035.2	3.97469e-4
MA0038.1	MA0038.1	0.11
MA0039.2	MA0039.2	9.44534e-5
MA0040.1	MA0040.1	0.0404
MA0041.1	MA0041.1	0.157
MA0042.1	MA0042.1	0.437
MA0043.1	MA0043.1	2.92303e-6
MA0046.1	MA0046.1	1.73143e-42
MA0047.2	MA0047.2	4.19068e-4
MA0048.1	MA0048.1	0.00723
MA0050.1	MA0050.1	0.00743
MA0051.1	MA0051.1	0.00513
MA0052.1	MA0052.1	0.327
MA0055.1	MA0055.1	1.02517e-4
MA0057.1	MA0057.1	0.185
MA0058.1	MA0058.1	0.00712
MA0059.1	MA0059.1	8.90678e-4
MA0060.1	MA0060.1	5.88688e-11
MA0061.1	MA0061.1	0.34
MA0062.2	MA0062.2	2.24426e-11
MA0065.2	MA0065.2	3.50076e-6
MA0066.1	MA0066.1	0.996
MA0067.1	MA0067.1	0.154
MA0068.1	MA0068.1	0.816
MA0069.1	MA0069.1	0.459
MA0070.1	MA0070.1	0.644
MA0071.1	MA0071.1	0.0642
MA0072.1	MA0072.1	0.662
MA0073.1	MA0073.1	0.99
MA0074.1	MA0074.1	0.801
MA0076.1	MA0076.1	4.75925e-8
MA0077.1	MA0077.1	0.219
MA0078.1	MA0078.1	0.257
MA0079.2	MA0079.2	0.334
MA0080.2	MA0080.2	0.00215
MA0081.1	MA0081.1	0.715
MA0083.1	MA0083.1	0.584
MA0084.1	MA0084.1	0.0311
MA0087.1	MA0087.1	0.171
MA0088.1	MA0088.1	0.0288
MA0090.1	MA0090.1	0.991
MA0091.1	MA0091.1	0.174
MA0092.1	MA0092.1	0.198
MA0093.1	MA0093.1	0.00962
MA0099.2	MA0099.2	0.0411
MA0100.1	MA0100.1	0.134
MA0101.1	MA0101.1	0.0267
MA0102.2	MA0102.2	0.645
MA0103.1	MA0103.1	5.82553e-6
MA0104.2	MA0104.2	0.00918
MA0105.1	MA0105.1	0.376
MA0106.1	MA0106.1	0.459
MA0107.1	MA0107.1	0.087
MA0108.2	MA0108.2	0.0137
MA0111.1	MA0111.1	0.486
MA0112.2	MA0112.2	0.217
MA0113.1	MA0113.1	0.44
MA0114.1	MA0114.1	3.58103e-15
MA0115.1	MA0115.1	3.72874e-8
MA0116.1	MA0116.1	0.216
MA0117.1	MA0117.1	0.736
MA0119.1	MA0119.1	0.606
MA0122.1	MA0122.1	0.225
MA0124.1	MA0124.1	0.54
MA0125.1	MA0125.1	0.594
MA0131.1	MA0131.1	0.101
MA0135.1	MA0135.1	0.41
MA0136.1	MA0136.1	1.07295e-9
MA0137.2	MA0137.2	1.19763e-4
MA0138.2	MA0138.2	0.0505
MA0139.1	MA0139.1	0.141
MA0140.1	MA0140.1	0.327
MA0141.1	MA0141.1	6.68314e-4
MA0142.1	MA0142.1	0.0675
MA0143.1	MA0143.1	0.109
MA0144.1	MA0144.1	0.011
MA0145.1	MA0145.1	0.712
MA0146.1	MA0146.1	0.314
MA0147.1	MA0147.1	0.00209
MA0148.1	MA0148.1	0.00101
MA0149.1	MA0149.1	0.00909
MA0150.1	MA0150.1	0.305
MA0152.1	MA0152.1	0.342
MA0153.1	MA0153.1	9.95202e-31
MA0154.1	MA0154.1	0.823
MA0155.1	MA0155.1	0.451
MA0156.1	MA0156.1	6.5807e-7
MA0157.1	MA0157.1	0.746
MA0159.1	MA0159.1	0.00361
MA0160.1	MA0160.1	3.93888e-4
MA0162.1	MA0162.1	0.947
MA0163.1	MA0163.1	0.0603
MA0164.1	MA0164.1	0.767
MA0258.1	MA0258.1	0.385
MA0259.1	MA0259.1	0.0898

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12557

Novel motif	Logo	P-value
1	1	0.437
10	10	0.0671
100	100	0.33
101	101	0.169
102	102	0.952
103	103	0.681
104	104	0.953
105	105	0.481
106	106	0.413
107	107	0.754
108	108	0.683
109	109	0.0564
11	11	0.339
110	110	0.146
111	111	0.223
112	112	0.16
113	113	0.0646
114	114	0.444
115	115	0.471
116	116	0.961
117	117	0.0144
118	118	0.642
119	119	0.987
12	12	0.903
120	120	0.624
121	121	0.344
122	122	0.879
123	123	0.0103
124	124	0.072
125	125	0.0235
126	126	0.00724
127	127	0.532
128	128	0.946
129	129	0.915
13	13	2.53855e-7
130	130	0.422
131	131	0.939
132	132	0.539
133	133	0.265
134	134	0.388
135	135	0.0424
136	136	0.00552
137	137	0.462
138	138	0.396
139	139	0.346
14	14	0.714
140	140	0.614
141	141	0.208
142	142	0.763
143	143	0.0578
144	144	0.0104
145	145	0.0132
146	146	0.309
147	147	0.566
148	148	0.28
149	149	0.208
15	15	0.41
150	150	0.475
151	151	0.584
152	152	0.464
153	153	0.815
154	154	0.589
155	155	0.948
156	156	0.39
157	157	0.441
158	158	0.309
159	159	0.745
160	160	0.879
161	161	0.689
162	162	0.113
163	163	0.682
164	164	0.189
165	165	0.188
166	166	0.529
167	167	0.214
168	168	0.92
169	169	0.235
17	17	0.187
18	18	0.179
19	19	0.628
2	2	0.206
20	20	0.0743
21	21	0.795
22	22	0.931
23	23	0.31
24	24	0.146
25	25	0.153
26	26	0.00235
27	27	0.828
28	28	0.894
29	29	0.00681
3	3	0.483
30	30	0.826
31	31	0.324
32	32	0.263
33	33	0.075
34	34	0.437
35	35	0.815
36	36	0.15
37	37	0.322
38	38	0.696
39	39	0.656
4	4	0.457
40	40	0.0536
41	41	0.254
42	42	0.85
43	43	0.648
44	44	0.88
45	45	0.86
46	46	0.409
47	47	0.705
48	48	0.336
49	49	0.844
5	5	0.76
50	50	0.864
51	51	0.825
52	52	0.732
53	53	0.414
54	54	0.959
55	55	0.935
56	56	0.967
57	57	0.706
58	58	0.293
59	59	0.648
6	6	0.64
60	60	0.179
61	61	0.279
62	62	0.286
63	63	0.555
64	64	0.735
65	65	0.839
66	66	0.324
67	67	0.559
68	68	0.761
69	69	0.143
7	7	0.0196
70	70	0.258
71	71	0.0363
72	72	0.464
73	73	0.0544
74	74	0.697
75	75	0.0164
76	76	0.57
77	77	0.772
78	78	0.0489
79	79	0.961
8	8	0.358
80	80	0.674
81	81	0.425
82	82	0.643
83	83	0.438
84	84	0.668
85	85	0.952
86	86	0.369
87	87	0.00396
88	88	0.5
89	89	0.978
9	9	0.708
90	90	0.164
91	91	0.0199
92	92	0.0898
93	93	0.111
94	94	0.427
95	95	8.47968e-4
96	96	0.456
97	97	0.939
98	98	0.634
99	99	0.753

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12557

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000079 mouse Lgr5-positive intestinal epithelial stem cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002563 (intestinal epithelial cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002250 (intestinal crypt stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000160 (intestine)
0000483 (epithelium)
0001242 (intestinal mucosa)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0005911 (endo-epithelium)
0004923 (organ component layer)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0001262 (wall of intestine)
0004786 (gastrointestinal system mucosa)
0000485 (simple columnar epithelium)
0003350 (epithelium of mucosa)
0003929 (gut epithelium)
0004808 (gastrointestinal system epithelium)
0001277 (intestinal epithelium)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)

FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000079 (mouse Lgr5-positive intestinal epithelial stem cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000060,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000119,UBERON:0000160,UBERON:0000344,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000485,UBERON:0000490,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0001007,UBERON:0001062,UBERON:0001242,UBERON:0001262,UBERON:0001277,UBERON:0001555,UBERON:0002050,UBERON:0002532,UBERON:0003350,UBERON:0003929,UBERON:0004119,UBERON:0004185,UBERON:0004786,UBERON:0004808,UBERON:0004921,UBERON:0004923,UBERON:0005409,UBERON:0005423,UBERON:0005911,UBERON:0007026
+|DRA_sample_Accession=CAGE@SAMD00005546
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000066,CL:0000144,CL:0000220,CL:0000223,CL:0000255,CL:0000548,CL:0000723,CL:0002076,CL:0002250,CL:0002251,CL:0002321,CL:0002371,CL:0002563
+|accession_numbers=CAGE;DRX008771;DRR009643;DRZ001068;DRZ002453;DRZ012418;DRZ013803
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000160,UBERON:0000483,UBERON:0001242,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0005911,UBERON:0004923,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0001262,UBERON:0004786,UBERON:0000485,UBERON:0003350,UBERON:0003929,UBERON:0004808,UBERON:0001277,UBERON:0010317,UBERON:0001555,UBERON:0005409
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0000066,CL:0002371,CL:0002563,CL:0000255,CL:0000034,CL:0002076,CL:0002251,CL:0002250
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000002,FF:0000101,FF:0000103,FF:0000001,FF:0000079
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:163332558..163332596,+!p2@Hnf4a!2.18!149.04!Hnf4a;;chr1:137155026..137155042,-!p1@Elf3!2.07!638.03!Elf3;;chr5:148118639..148118715,-!p1@Cdx2!1.89!76.97!Cdx2;;chr2:103123925..103123959,-!p3@Ehf!1.89!75.95!Ehf;;chr15:97738692..97738747,-!p1@Vdr!1.65!227.44!Vdr;;chr2:163372884..163372904,+!p1@Hnf4a!1.64!43.08!Hnf4a;;chr18:61195865..61195880,-!p1@Cdx1!1.63!41.85!Cdx1;;chr7:19608891..19608895,-!p1@Foxa3!1.59!48.39!Foxa3;;chr2:103143336..103143367,-!p1@Ehf!1.58!58.39!Ehf;;chr7:19895354..19895369,-!p1@Fosb!1.56!47.57!Fosb;;chr10:20880629..20880683,-!p1@Myb!1.54!93.10!Myb;;chr18:61195843..61195864,-!p2@Cdx1!1.53!32.67!Cdx1;;chr5:135582751..135582788,+!p1@Mlxipl!1.52!123.32!Mlxipl;;chr1:193007123..193007139,-!p1@Atf3!1.49!159.25!Atf3;;chr8:77396591..77396639,+!p1@Isx!1.49!30.01!Isx;;chr12:86814833..86814846,+!p1@Fos!1.47!634.97!Fos;;chr3:3508024..3508069,+!p2@Hnf4g!1.46!27.97!Hnf4g;;chr19:5560600..5560617,-!p1@Ovol1!1.45!33.08!Ovol1;;chr7:19895384..19895399,-!p2@Fosb!1.43!36.55!Fosb;;chr16:38294860..38294924,-!p1@Nr1i2!1.43!26.13!Nr1i2;;chr14:63864056..63864102,-!p1@Gata4!1.39!40.43!Gata4;;chr5:148118840..148118857,-!p2@Cdx2!1.36!22.05!Cdx2;;chr3:30039329..30039355,-!p5@Mecom!1.29!18.58!Mecom;;chr7:150155143..150155156,-!p1@Ascl2!1.28!17.97!Ascl2;;chr18:64499706..64499721,+!p2@Onecut2!1.27!24.50!Onecut2;;chr18:64499674..64499696,+!p1@Onecut2!1.23!27.36!Onecut2;;chr10:88969376..88969395,-!p1@Nr1h4!1.23!16.13!Nr1h4;;chr5:148118792..148118806,-!p3@Cdx2!1.23!15.93!Cdx2;;chr2:103143315..103143328,-!p2@Ehf!1.20!14.70!Ehf;;chr11:106128936..106128955,-!p4@Smarcd2!1.16!15.52!Smarcd2;;chr10:127095407..127095440,+!p3@Stat6!1.15!16.13!Stat6;;chr14:99697871..99697934,+!p1@Klf5!1.12!238.88!Klf5;;chr8:77397095..77397127,+!p2@Isx!1.12!12.05!Isx;;chr3:128918394..128918413,+!p5@Pitx2!1.10!11.64!Pitx2;;chr4:94718861..94718872,-!p2@Jun!1.09!85.55!Jun;;chr2:180069370..180069409,-!p1@Gata5!1.09!13.27!Gata5;;chr14:76887526..76887555,+!p10@Tsc22d1!1.09!11.43!Tsc22d1;;chr5:148118809..148118832,-!p5@Cdx2!1.09!11.43!Cdx2;;chr3:3634145..3634161,+!p1@Hnf4g!1.09!11.23!Hnf4g;;chr18:35020854..35020869,+!p1@Egr1!1.07!416.51!Egr1;;chr9:59797503..59797513,-!p3@Nr2e3!1.07!10.62!Nr2e3;;chr4:124805061..124805087,-!p1@Zc3h12a!1.06!33.08!Zc3h12a;;chr8:73222425..73222444,+!p2@Jund!1.06!10.41!Jund;;chr10:67000609..67000625,+!p1@Egr2!1.05!24.09!Egr2;;chr10:20880698..20880717,-!p3@Myb!1.05!16.13!Myb;;chr14:32978970..32978984,+!p2@Gm6768,p2@Ncoa4!1.05!16.13!Ncoa4;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.05!13.07!Zbtb11;;chr18:11052642..11052659,+!p1@Gata6!1.03!49.82!Gata6;;chr2:70313168..70313184,+!p1@Sp5!1.02!14.29!Sp5;;chr10:61595830..61595846,+!p1@Neurog3!1.02!9.39!Neurog3;;chr5:77524250..77524300,-!p1@Hopx!0.99!179.67!Hopx;;chr13:44825008..44825066,+!p5@Jarid2!0.99!17.35!Jarid2;;chr12:58646974..58647003,-!p1@Foxa1!0.98!11.64!Foxa1;;chr9:59797525..59797538,-!p2@Nr2e3!0.98!8.58!Nr2e3;;chr3:3508005..3508021,+!p3@Hnf4g!0.96!8.17!Hnf4g;;chr17:27693706..27693724,+!p4@Hmga1,p5@Hmga1-rs1!0.95!20.01!Hmga1;;chr11:98636508..98636524,-!p3@Nr1d1!0.95!9.80!Nr1d1;;chr1:138857048..138857071,-!p2@Nr5a2!0.95!7.96!Nr5a2;;chr8:123260252..123260264,+!p1@Irf8!0.94!56.55!Irf8;;chr8:77397492..77397514,+!p3@Isx!0.94!7.76!Isx;;chr5:29805118..29805137,-!p1@Mnx1!0.94!7.76!Mnx1;;chr17:28409136..28409150,+!p3@Ppard!0.94!7.76!Ppard;;chr14:63890545..63890560,-!p5@Gata4!0.93!7.55!Gata4;;chr8:87502608..87502623,-!p1@Junb!0.92!123.93!Junb;;chr5:115421065..115421088,-!p1@Hnf1a!0.92!7.35!Hnf1a;;chr8:124806048..124806094,+!p1@Zfpm1!0.91!67.58!Zfpm1;;chr3:128916868..128916890,+!p1@Pitx2!0.90!9.60!Pitx2;;chr14:63890491..63890516,-!p2@Gata4!0.90!6.94!Gata4;;chr1:138857076..138857105,-!p1@Nr5a2!0.90!6.94!Nr5a2;;chr2:147871627..147871641,-!p1@Foxa2!0.90!6.94!Foxa2;;chr1:194979315..194979359,+!p1@Irf6!0.89!43.28!Irf6;;chr4:122673187..122673201,+!p2@Mycl1!0.89!12.25!Mycl1;;chr18:11052606..11052633,+!p4@Gata6!0.88!17.15!Gata6;;chr17:27693788..27693803,+!p3@Hmga1,p4@Hmga1-rs1!0.87!30.63!Hmga1;;chr17:27693746..27693759,+!p6@Hmga1-rs1,p7@Hmga1!0.87!13.27!Hmga1;;chr11:83664365..83664383,+!p1@Hnf1b!0.87!6.33!Hnf1b;;chr5:77543897..77543911,-!p2@Hopx!0.86!12.45!Hopx;;chr8:77396650..77396662,+!p4@Isx!0.85!6.13!Isx;;chr15:37162796..37162828,+!p1@Grhl2!0.82!9.80!Grhl2;;chr12:109242266..109242295,-!p1@Bcl11b!0.81!49.00!Bcl11b;;chr7:20162663..20162678,+!p1@Zfp296!0.81!7.35!Zfp296;;chr14:63890519..63890539,-!p3@Gata4!0.81!5.51!Gata4;;chr1:189432881..189432903,+!p2@Esrrg!0.81!5.51!Esrrg;;chr19:5560570..5560582,-!p2@Ovol1!0.81!5.51!Ovol1;;chr17:27865882..27865901,-!p1@Spdef!0.81!5.51!Spdef;;chr2:152561980..152561997,+!p1@Id1!0.79!162.93!Id1;;chr5:77544170..77544181,-!p6@Hopx!0.79!5.10!Hopx;;chr4:94718879..94718898,-!p1@Jun!0.78!398.74!Jun;;chr11:53583544..53583559,+!p1@Irf1!0.78!93.10!Irf1;;chr4:154010918..154010931,-!p1@Prdm16!0.78!15.72!Prdm16;;chr1:194979361..194979373,+!p2@Irf6!0.78!6.94!Irf6;;chr7:31206743..31206761,+!p1@Nfkbid!0.77!6.94!Nfkbid;;chr2:163372869..163372882,+!p3@Hnf4a!0.77!4.90!Hnf4a;;chr19:5447692..5447711,+!p2@Fosl1!0.76!4.70!Fosl1;;chr4:6917921..6917970,-!p2@Tox!0.75!13.88!Tox;;chr17:28409059..28409076,+!p6@Ppard!0.74!4.49!Ppard;;chr16:55822241..55822258,-!p1@Nfkbiz!0.72!147.82!Nfkbiz;;chr15:79177964..79177986,+!p1@Maff!0.72!16.13!Maff;;chr6:64679112..64679126,+!p1@Atoh1!0.72!4.29!Atoh1;;chr5:148081686..148081715,+!p1@Pdx1!0.72!4.29!Pdx1;;chr5:29805170..29805178,-!p2@Mnx1!0.71!4.08!Mnx1;;chr1:194982959..194983007,+!p5@Irf6!0.71!4.08!Irf6;;chr16:30064250..30064282,+!p6@Hes1!0.71!4.08!Hes1;;chr1:189821714..189821761,+!p1@Esrrg!0.69!7.76!Esrrg;;chr3:96002383..96002407,-!p4@Bola1!0.69!5.31!Bola1;;chr15:37163124..37163153,+!p3@Grhl2!0.69!3.88!Grhl2;;chr10:70700755..70700772,-!p2@Tfam!0.68!20.83!Tfam;;chr5:140267510..140267555,+!p2@Mafk!0.68!9.80!Mafk;;chr15:75799634..75799645,+!p4@Zfp707!0.68!4.49!Zfp707;;chr11:106128919..106128933,-!p8@Smarcd2!0.67!3.68!Smarcd2;;chr8:77397190..77397202,+!p5@Isx!0.67!3.68!Isx;;chr4:133109285..133109308,+!p1@Nr0b2!0.67!3.68!Nr0b2;;chr3:128918433..128918448,+!p8@Pitx2!0.67!3.68!Pitx2;;chr10:80555320..80555378,-!p1@Creb3l3!0.66!4.29!Creb3l3;;chr15:37162834..37162849,+!p2@Grhl2!0.65!4.29!Grhl2;;chr9:43013917..43013968,-!p1@Pou2f3!0.65!3.47!Pou2f3;;chr15:35225845..35225867,+!p1@Osr2!0.64!9.39!Osr2;;chr19:6996243..6996293,-!p1@Esrra!0.63!42.88!Esrra;;chr14:98568971..98569025,-!p1@Dach1!0.63!29.81!Dach1;;chr8:79426176..79426275,+!p1@Nr3c2!0.63!18.99!Nr3c2;;chr15:25914114..25914128,+!p2@Zfp622!0.63!15.31!Zfp622;;chr5:76733981..76734018,-!p3@Clock!0.63!7.76!Clock;;chr1:138845748..138845766,-!p4@Nr5a2!0.63!4.49!Nr5a2;;chr2:180069640..180069660,-!p4@Gata5!0.63!3.27!Gata5;;chr9:59796270..59796294,-!p4@Nr2e3!0.63!3.27!Nr2e3;;chr2:91077082..91077122,-!p1@Ddb2!0.62!23.48!Ddb2;;chr4:154010940..154010962,-!p3@Prdm16!0.62!7.76!Prdm16;;chr10:119913310..119913366,-!p1@Hmga2!0.61!28.99!Hmga2;;chr8:73905344..73905381,-!p2@Nr2f6!0.61!8.37!Nr2f6;;chr15:85566014..85566045,+!p3@Ppara!0.61!4.49!Ppara;;chr15:85565338..85565355,+!p7@Ppara!0.61!3.06!Ppara;;chr11:98614335..98614349,+!p8@Thra!0.61!3.06!Thra;;chr5:148118614..148118625,-!p4@Cdx2!0.61!3.06!Cdx2;;chr10:30375579..30375616,-!p3@Ncoa7!0.60!7.96!Ncoa7;;chr1:189432857..189432870,+!p7@Esrrg!0.59!2.86!Esrrg;;chr5:77543935..77543947,-!p4@Hopx!0.59!2.86!Hopx;;chr14:76887566..76887579,+!p18@Tsc22d1!0.59!2.86!Tsc22d1;;chr7:35904304..35904320,+!p1@Cebpa!0.58!69.83!Cebpa;;chr8:124806017..124806040,+!p2@Zfpm1!0.57!36.34!Zfpm1;;chr18:55152206..55152251,-!p1@Zfp608!0.57!32.26!Zfp608;;chr11:98636531..98636559,-!p1@Nr1d1!0.56!18.58!Nr1d1;;chr4:148178559..148178603,+!p1@Casz1!0.56!8.98!Casz1;;chr3:90046995..90047031,-!p2@Creb3l4!0.56!3.47!Creb3l4;;chr18:35020615..35020641,+!p2@Egr1!0.56!3.27!Egr1;;chr13:55932591..55932622,-!p1@Pitx1!0.56!3.27!Pitx1;;chr1:173144100..173144138,+!p2@Nr1i3!0.56!2.65!Nr1i3;;chr1:93309740..93309811,-!p1@Hes6!0.54!63.70!Hes6;;chr14:98568761..98568814,-!p2@Dach1!0.54!21.03!Dach1;;chr2:91077034..91077078,-!p2@Ddb2!0.54!6.33!Ddb2;;chr13:64254502..64254515,-!p3@Zfp367!0.54!4.08!Zfp367;;chr9:59796330..59796350,-!p6@Nr2e3!0.54!2.45!Nr2e3;;chr11:83664334..83664353,+!p2@Hnf1b!0.54!2.45!Hnf1b;;chr1:189432907..189432926,+!p3@Esrrg!0.54!2.45!Esrrg;;chr19:5447886..5447905,+!p1@Fosl1!0.54!2.45!Fosl1;;chr2:162880387..162880413,+!p1@Mybl2!0.53!18.99!Mybl2;;chr4:122673278..122673336,+!p1@Mycl1!0.53!9.19!Mycl1;;chr15:61817095..61817111,+!p1@Myc!0.52!177.83!Myc;;chr17:48061381..48061399,-!p1@Foxp4!0.52!33.48!Foxp4;;chr3:94176733..94176794,+!p1@Rorc!0.52!22.87!Rorc;;chr2:38781916..38781974,-!p1@Nr6a1!0.52!8.58!Nr6a1;;chr5:77524304..77524315,-!p5@Hopx!0.52!5.72!Hopx;;chr14:52639709..52639753,-!p5@Zfp219!0.51!5.92!Zfp219;;chr11:83666422..83666446,+!p4@Hnf1b!0.51!2.25!Hnf1b;;chr14:79915425..79915501,+!p1@Elf1!0.50!24.91!Elf1;;chr13:64254457..64254497,-!p1@Zfp367!0.50!12.25!Zfp367;;chr10:107769168..107769215,+!p1@Pawr!0.49!28.38!Pawr;;chr6:86619104..86619119,-!p1@Mxd1!0.49!22.46!Mxd1;;chr5:77524231..77524245,-!p3@Hopx!0.49!6.33!Hopx;;chr2:56967334..56967366,-!p1@Nr4a2!0.49!5.10!Nr4a2;;chr17:27693558..27693580,+!p1@Hmga1-rs1,p1@Hmga1!0.48!127.81!Hmga1;;chr10:20880731..20880775,-!p2@Myb!0.48!5.10!Myb;;chr8:124806111..124806122,+!p3@Zfpm1!0.48!2.65!Zfpm1;;chr1:189821700..189821713,+!p4@Esrrg!0.48!2.04!Esrrg;;chr5:148081667..148081678,+!p3@Pdx1!0.48!2.04!Pdx1;;chr7:13563626..13563634,+!p6@Zfp446!0.48!2.04!Zfp446;;chr13:55932739..55932756,-!p5@Pitx1!0.48!2.04!Pitx1;;chr1:64579555..64579570,+!p3@Creb1!0.47!12.25!Creb1;;chrX:48559079..48559108,-!p2@Mbnl3!0.47!5.51!Mbnl3;;chr16:4559721..4559747,-!p3@Tfap4!0.47!5.31!Tfap4;;chr12:109241852..109241873,-!p4@Bcl11b!0.47!2.45!Bcl11b;;chr7:20408047..20408125,-!p1@Bcl3!0.46!29.60!Bcl3;;chr15:101097270..101097290,+!p1@Nr4a1!0.46!26.34!Nr4a1;;chr7:97591412..97591431,+!p2@Crebzf!0.46!6.33!Crebzf;;chr11:3189171..3189197,+!p4@Patz1!0.46!4.29!Patz1;;chr16:55822638..55822669,-!p3@Nfkbiz!0.46!3.27!Nfkbiz;;chr13:64254437..64254453,-!p4@Zfp367!0.46!2.86!Zfp367;;chr7:134519473..1345195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1!0.10!3.47!Epas1;;chr8:81923350..81923361,-!p3@Smad1!0.10!3.47!Smad1;;chr1:172797920..172797931,-!p3@Atf6!0.10!2.65!Atf6;;chr8:72520225..72520248,-!p9@Gatad2a!0.10!2.25!Gatad2a;;chrX:35543006..35543019,+!p2@Zbtb33!0.10!2.25!Zbtb33;;chr3:152059025..152059046,+!p4@Gm8261,p4@Zzz3!0.10!2.04!Zzz3;;chr17:4994491..4994531,+!p6@Arid1b!0.10!1.43!Arid1b;;chr5:104183237..104183248,+!p7@Aff1!0.10!1.02!Aff1;;chr7:31207408..31207450,+!p4@Nfkbid!0.10!1.02!Nfkbid;;chr2:92886587..92886622,-!p3@Prdm11!0.10!0.82!Prdm11;;chr4:151235871..151235882,-!p7@Camta1!0.10!0.61!Camta1;;chr8:107793688..107793736,+!p1@Hsf4!0.10!0.61!Hsf4;;chr17:27693922..27693934,+!p10@Hmga1-rs1,p11@Hmga1!0.10!0.61!Hmga1;;chr17:84587077..84587097,-!p4@Zfp36l2!0.10!0.61!Zfp36l2;;chr16:55838940..55838966,-!p5@Nfkbiz!0.10!0.41!Nfkbiz;;chr5:38611816..38611827,+!p4@Lyar!0.10!0.41!Lyar;;chr13:112476296..112476308,+!p4@Mier3!0.10!0.41!Mier3;;chr9:111020710..111020721,+!p2@Lrrfip2!0.10!0.41!Lrrfip2;;chr8:107821563..107821642,+!p1@E2f4!0.09!30.63!E2f4;;chr7:26035739..26035757,-!p1@Erf!0.09!26.95!Erf;;chr6:48036529..48036657,-!p1@Zfp746!0.09!16.54!Zfp746;;chr5:108494715..108494757,+!p1@Mtf2!0.09!16.13!Mtf2;;chr12:110031156..110031198,+!p2@Yy1!0.09!15.11!Yy1;;chr15:81494344..81494388,+!p1@L3mbtl2!0.09!12.45!L3mbtl2;;chr7:134565516..134565573,-!p1@Zfp688!0.09!12.05!Zfp688;;chr1:135320989..135321043,-!p1@Sox13!0.09!11.43!Sox13;;chr17:24592210..24592290,-!p1@E4f1!0.09!10.82!E4f1;;chr17:47873985..47874056,+!p1@Tfeb!0.09!8.37!Tfeb;;chr5:147760339..147760350,+!p3@Gtf3a!0.09!2.45!Gtf3a;;chr17:3557718..3557733,-!p2@Tfb1m!0.09!2.25!Tfb1m;;chr18:35721916..35721927,+!p3@Matr3!0.09!2.25!Matr3;;chr7:25292076..25292114,+!p4@Zfp428!0.09!2.25!Zfp428;;chr7:30875418..30875454,-!p2@Zfp566,p2@Zfp82!0.09!2.25!Zfp566;;chr11:59285966..59285990,-!p2@Zfp867!0.09!2.04!Zfp867;;chr17:69733108..69733129,+!p3@Zfp161!0.09!1.02!Zfp161;;chr18:75527210..75527215,+!p4@Smad7!0.09!1.02!Smad7;;chr7:134169999..134170010,-!p13@Maz!0.09!1.02!Maz;;chr14:47896526..47896539,-!p2@Wdhd1!0.09!1.02!Wdhd1;;chr4:48058016..48058032,+!p3@Nr4a3!0.09!1.02!Nr4a3;;chr5:120120981..120120992,+!p5@Tbx3!0.09!0.61!Tbx3;;chr16:91270004..91270023,+!p1@Olig1!0.09!0.41!Olig1;;chr2:32218688..32218697,+!p6@Ciz1!0.09!0.41!Ciz1;;chr11:101646127..101646147,-!p5@Etv4!0.09!0.41!Etv4;;chr11:98636373..98636387,-!p5@Nr1d1!0.09!0.41!Nr1d1;;chr13:44829403..44829438,+!p11@Jarid2!0.09!0.41!Jarid2;;chr9:111020574..111020687,+!p1@Lrrfip2!0.08!48.18!Lrrfip2;;chr16:3744089..3744145,+!p1@Zfp263!0.08!22.25!Zfp263;;chr8:74474953..74475029,+!p1@Zfp961!0.08!17.15!Zfp961;;chr5:138596922..138596968,-!p1@Zfp113!0.08!10.00!Zfp113;;chr19:28085628..28085671,-!p1@Rfx3!0.08!6.74!Rfx3;;chr8:107694661..107694713,+!p2@Cbfb!0.08!6.53!Cbfb;;chr7:24919204..24919231,+!p2@Zfp235!0.08!5.31!Zfp235;;chr11:101646566..101646603,-!p1@Etv4!0.08!2.65!Etv4;;chr6:124959016..124959061,+!p3@Zfp384!0.08!2.04!Zfp384;;chrX:34443339..34443348,-!p2@Nkrf!0.08!2.04!Nkrf;;chr5:104182963..104182982,+!p5@Aff1!0.08!1.43!Aff1;;chr4:149943326..149943351,+!p4@Rere!0.08!1.23!Rere;;chr4:48058129..48058179,+!p2@Nr4a3!0.08!1.23!Nr4a3;;chr10:119913792..119913820,-!p5@Hmga2!0.08!1.02!Hmga2;;chr8:111227518..111227550,+!p@chr8:111227518..111227550,+!0.08!1.02!Zfhx3;;chr19:23216132..23216157,+!p3@Klf9!0.08!0.82!Klf9;;chr2:27532817..27532828,+!p6@Rxra!0.08!0.82!Rxra;;chr7:148513548..148513560,-!p7@Deaf1!0.08!0.82!Deaf1;;chr17:84586544..84586592,-!p3@Zfp36l2!0.08!0.61!Zfp36l2;;chr2:17985518..17985540,+!p6@Mllt10!0.08!0.61!Mllt10;;chr10:41996451..41996462,-!p5@Foxo3!0.08!0.61!Foxo3;;chr11:98636568..98636574,-!p9@Nr1d1!0.08!0.41!Nr1d1;;chr8:73905892..73905903,-!p5@Nr2f6!0.08!0.41!Nr2f6;;chr9:96159427..96159432,+!p11@Tfdp2!0.08!0.41!Tfdp2;;chr4:55545152..55545194,-!p3@Klf4!0.08!0.41!Klf4;;chr14:22808697..22808715,-!p4@Zfp503!0.08!0.41!Zfp503;;chr14:18493470..18493477,+!p4@Thrb!0.08!0.20!Thrb;;chr14:98568502..98568516,-!p7@Dach1!0.08!0.20!Dach1;;chr12:86815252..86815257,+!p11@Fos!0.08!0.20!Fos;;chr12:77278238..77278252,-!p1@Esr2!0.08!0.20!Esr2;;chr14:17408052..17408073,-!p5@Rarb!0.08!0.20!Rarb;;chr12:39510290..39510309,+!p5@Etv1!0.08!0.20!Etv1;;chr13:96093557..96093561,+!p6@Zbed3!0.08!0.20!Zbed3;;chr12:25257265..25257294,+!p2@Grhl1!0.08!0.20!Grhl1;;chr14:32979005..32979017,+!p7@Gm6768,p7@Ncoa4!0.08!0.20!Ncoa4;;chr4:118967319..118967330,-!p6@Ybx1!0.08!0.20!Ybx1;;chr3:90046983..90046994,-!p6@Creb3l4!0.08!0.20!Creb3l4;;chr3:32264814..32264835,-!p5@Zmat3!0.08!0.20!Zmat3;;chr2:9811653..9811662,-!p8@Gata3!0.08!0.20!Gata3;;chr2:74520048..74520064,+!p1@Hoxd11!0.08!0.20!Hoxd11;;chr4:148178459..148178482,+!p4@Casz1!0.08!0.20!Casz1;;chr4:133312435..133312454,-!p22@Arid1a!0.08!0.20!Arid1a;;chr4:119487109..119487131,+!p4@Hivep3!0.08!0.20!Hivep3;;chr4:154010313..154010324,-!p9@Prdm16!0.08!0.20!Prdm16;;chr4:102792066..102792069,+!p14@Mier1!0.08!0.20!Mier1;;chr11:59319796..59319801,-!p6@Zkscan17!0.08!0.20!Zkscan17;;chr11:23670827..23670846,-!p3@Rel!0.08!0.20!Rel;;chr11:23671279..23671293,-!p8@Rel!0.08!0.20!Rel;;chr10:80555299..80555306,-!p3@Creb3l3!0.08!0.20!Creb3l3;;chr11:69749437..69749467,+!p3@Ybx2!0.08!0.20!Ybx2;;chr11:69749396..69749433,+!p1@Ybx2!0.08!0.20!Ybx2;;chr11:58717660..58717670,-!p4@Zfp39!0.08!0.20!Zfp39;;chr10:20872753..20872775,-!p11@Myb!0.08!0.20!Myb;;chr11:100800869..100800880,-!p6@Stat3!0.08!0.20!Stat3;;chr10:20032169..20032206,+!p8@Bclaf1!0.08!0.20!Bclaf1;;chr11:96132637..96132652,+!p1@Hoxb9!0.08!0.20!Hoxb9;;chr11:98826216..98826227,+!p10@Rara!0.08!0.20!Rara;;chr10:20862857..20862868,-!p7@Myb!0.08!0.20!Myb;;chr12:109241804..109241823,-!p5@Bcl11b!0.08!0.20!Bcl11b;;chr11:23671230..23671264,-!p6@Rel!0.08!0.20!Rel;;chr11:21901587..21901604,-!p2@Otx1!0.08!0.20!Otx1;;chr11:98822093..98822104,+!p16@Rara!0.08!0.20!Rara;;chr11:100553754..100553787,-!p1@Zfp385c!0.08!0.20!Zfp385c;;chr11:62271076..62271096,-!p19@Ncor1!0.08!0.20!Ncor1;;chr11:52096260..52096274,-!p12@Tcf7!0.08!0.20!Tcf7;;chr10:119913301..119913302,-!p11@Hmga2!0.08!0.20!Hmga2;;chr10:30375647..30375658,-!p7@Ncoa7!0.08!0.20!Ncoa7;;chr11:120494983..120494990,-!p13@Mafg!0.08!0.20!Mafg;;chr11:23978270..23978290,+!p9@Bcl11a!0.08!0.20!Bcl11a;;chr12:109241411..109241422,-!p8@Bcl11b!0.08!0.20!Bcl11b;;chr10:30562939..30562969,-!p5@Hey2!0.08!0.20!Hey2;;chr11:23978291..23978323,+!p7@Bcl11a!0.08!0.20!Bcl11a;;chr10:30375559..30375568,-!p9@Ncoa7!0.08!0.20!Ncoa7;;chr11:97524329..97524348,+!p6@Mllt6!0.08!0.20!Mllt6;;chr11:98190918..98190951,-!p1@Neurod2!0.08!0.20!Neurod2;;chr11:23977965..23977974,+!p11@Bcl11a!0.08!0.20!Bcl11a;;chr10:20881239..20881254,-!p5@Myb!0.08!0.20!Myb;;chr11:69749367..69749385,+!p4@Ybx2!0.08!0.20!Ybx2;;chr11:69749347..69749356,+!p8@Ybx2!0.08!0.20!Ybx2;;chr6:98978428..98978450,-!p15@Foxp1!0.08!0.20!Foxp1;;chr7:17200127..17200137,-!p11@Grlf1!0.08!0.20!Grlf1;;chr5:92391970..92391984,+!p5@Thap6!0.08!0.20!Thap6;;chr5:31754898..31754907,+!p5@Zfp512!0.08!0.20!Zfp512;;chr6:70906450..70906454,+!p1@Foxi3!0.08!0.20!Foxi3;;chr5:138187918..138187929,+!p20@Tsc22d4!0.08!0.20!Tsc22d4;;chr7:147234982..147234988,-!p1@Msx3!0.08!0.20!Msx3;;chr6:115311132..115311147,+!p9@Pparg!0.08!0.20!Pparg;;chr7:13563672..13563687,+!p5@Zfp446!0.08!0.20!Zfp446;;chr5:38611831..38611842,+!p3@Lyar!0.08!0.20!Lyar;;chr5:138526401..138526410,+!p3@Zkscan1!0.08!0.20!Zkscan1;;chr7:138553839..138553860,-!p2@Ikzf5!0.08!0.20!Ikzf5;;chr6:99216360..99216372,-!p8@Foxp1!0.08!0.20!Foxp1;;chr9:71959508..71959519,-!p15@Tcf12!0.08!0.20!Tcf12;;chr7:31207291..31207314,+!p15@Nfkbid!0.08!0.20!Nfkbid;;chr8:87425854..87425891,+!p1@Klf1!0.08!0.20!Klf1;;chr7:19895122..19895142,-!p4@Fosb!0.08!0.20!Fosb;;chr7:52960888..52960902,+!p7@Dbp!0.08!0.20!Dbp;;chr9:24578720..24578735,-!p1@Tbx20!0.08!0.20!Tbx20;;chr7:30089006..30089022,+!p3@Dpf1!0.08!0.20!Dpf1;;chr1:179372666..179372678,+!p11@Zfp238!0.08!0.20!Zfp238;;chr1:87497610..87497645,+!p1@Gm2427,p1@Sp140!0.08!0.20!Sp140;;chr2:154395524..154395535,-!p5@E2f1!0.08!0.20!E2f1;;chr2:24278519..24278530,-!p3@Pax8!0.08!0.20!Pax8;;chr1:135557383..135557395,-!p5@Zbed6!0.08!0.20!Zbed6;;chr1:165219345..165219366,-!p7@Prrx1!0.08!0.20!Prrx1;;chr1:179372514..179372525,+!p7@Zfp238!0.08!0.20!Zfp238;;chr1:120524563..120524591,+!p2@Tfcp2l1!0.08!0.20!Tfcp2l1;;chr1:87497443..87497454,+!p3@Gm2427,p3@Sp140!0.08!0.20!Sp140;;chr19:5447859..5447866,+!p3@Fosl1!0.08!0.20!Fosl1;;chr19:5425367..5425388,-!p15@Drap1!0.08!0.20!Drap1;;chr15:85566537..85566552,+!p2@Ppara!0.08!0.20!Ppara;;chr19:28085572..28085579,-!p9@Rfx3!0.08!0.20!Rfx3;;chr17:34784066..34784067,+!p5@Atf6b!0.08!0.20!Atf6b;;chr16:11176118..11176131,-!p11@Zc3h7a!0.08!0.20!Zc3h7a;;chr17:71201226..71201233,-!p16@Tgif1!0.08!0.20!Tgif1;;chr19:46380399..46380417,+!p4@Nfkb2!0.08!0.20!Nfkb2;;chr7:134170235..134170294,-!p1@Maz!0.07!28.99!Maz;;chr6:92041430..92041460,+!p1@Nr2c2!0.07!23.89!Nr2c2;;chr8:27268658..27268724,+!p1@Thap1!0.07!12.05!Thap1;;chr7:28645585..28645659,+!p1@Zfp607!0.07!9.39!Zfp607;;chr3:95021853..95021911,-!p1@Gabpb2!0.07!7.35!Gabpb2;;chr9:21420572..21420591,+!p2@Smarca4!0.07!5.10!Smarca4;;chr8:125778131..125778178,+!p1@Zfp276!0.07!4.08!Zfp276;;chr18:55147667..55147746,-!p2@Zfp608!0.07!4.08!Zfp608;;chr13:67552527..67552574,-!p1@Zfp874a!0.07!3.88!Zfp874a;;chr7:20214704..20214800,-!p1@Relb!0.07!2.65!Relb;;chr7:134519542..134519569,-!p1@Zfp747!0.07!2.45!Zfp747;;chr1:133904901..133904934,+!p3@Elk4!0.07!2.25!Elk4;;chr1:15795704..15795713,+!p2@Terf1!0.07!1.84!Terf1;;chr3:135354452..135354475,-!p5@Nfkb1!0.07!1.84!Nfkb1;;chr5:65194789..65194800,+!p7@Klf3!0.07!1.84!Klf3;;chr8:81923398..81923409,-!p4@Smad1!0.07!1.84!Smad1;;chr6:134780163..134780197,+!p2@Crebl2!0.07!1.63!Crebl2;;chr5:65194709..65194716,+!p10@Klf3!0.07!1.23!Klf3;;chr5:104183477..104183548,+!p6@Aff1!0.07!1.23!Aff1;;chr13:58501849..58501853,-!p5@Hnrnpk!0.07!1.02!Hnrnpk;;chr5:120121169..120121171,+!p4@Tbx3!0.07!1.02!Tbx3;;chr7:134758722..134758733,-!p2@Zfp629!0.07!0.82!Zfp629;;chr16:30065394..30065398,+!p3@Hes1!0.07!0.61!Hes1;;chr10:44178493..44178520,-!p3@Prdm1!0.07!0.61!Prdm1;;chr10:114821382..114821392,-!p8@Thap2!0.07!0.41!Thap2;;chr4:154335024..154335039,+!p1@Hes5!0.07!0.41!Hes5;;chr3:135354375..135354381,-!p10@Nfkb1!0.07!0.41!Nfkb1;;chr2:153067233..153067236,-!p4@Plagl2!0.07!0.41!Plagl2;;chr6:29490887..29490891,+!p5@Irf5!0.07!0.41!Irf5;;chr15:61818914..61818943,+!p7@Myc!0.07!0.41!Myc;;chr17:57170891..57170961,-!p1@Khsrp!0.06!93.31!Khsrp;;chr9:110034519..110034606,+!p1@Smarcc1!0.06!43.90!Smarcc1;;chr12:99985145..99985256,+!p1@Zc3h14!0.06!34.71!Zc3h14;;chr2:153067094..153067130,-!p1@Plagl2!0.06!24.91!Plagl2;;chr1:181733756..181733833,-!p1@Ahctf1!0.06!18.99!Ahctf1;;chr14:22807083..22807104,-!p1@Zfp503!0.06!17.56!Zfp503;;chr7:134488857..134488914,-!p1@Zfp768!0.06!13.27!Zfp768;;chr7:134376741..134376831,+!p1@Zfp553!0.06!12.86!Zfp553;;chr16:42907676..42907797,+!p1@Zbtb20!0.06!12.66!Zbtb20;;chr5:108697916..108697943,+!p2@Dr1!0.06!11.43!Dr1;;chr12:25336211..25336274,+!p1@Klf11!0.06!10.00!Klf11;;chr4:97444012..97444045,+!p4@Nfia!0.06!7.15!Nfia;;chr19:6996294..6996324,-!p2@Esrra!0.06!6.13!Esrra;;chr19:46379199..46379301,+!p1@Nfkb2!0.06!5.10!Nfkb2;;chr7:28623579..28623631,+!p1@Zfp59!0.06!4.08!Zfp59;;chr17:15701286..15701323,-!p1@Prdm9!0.06!3.27!Prdm9;;chr11:102179074..102179099,-!p4@Ubtf!0.06!2.25!Ubtf;;chr6:72849808..72849837,-!p4@Kcmf1!0.06!2.25!Kcmf1;;chr4:87679193..87679219,-!p5@Mllt3!0.06!2.04!Mllt3;;chr2:91077124..91077146,-!p3@Ddb2!0.06!1.84!Ddb2;;chr7:13063643..13063662,+!p2@Zfp606!0.06!1.84!Zfp606;;chr13:64253718..64253763,-!p2@Zfp367!0.06!1.84!Zfp367;;chr7:148008023..148008092,-!p1@Zfp941!0.06!1.63!Zfp941;;chr1:64579465..64579474,+!p5@Creb1!0.06!1.63!Creb1;;chr2:126501253..126501268,-!p3@Gabpb1!0.06!1.43!Gabpb1;;chr8:74405860..74405905,+!p2@Zfp709!0.06!1.43!Zfp709;;chr3:152058408..152058453,+!p5@Gm8261,p5@Zzz3!0.06!1.43!Zzz3;;chr4:102787521..102787588,+!p4@Mier1!0.06!1.02!Mier1;;chr7:56136402..56136420,-!p3@E2f8!0.06!1.02!E2f8;;chr15:100058358..100058374,+!p2@Gm1862,p4@Atf1!0.06!1.02!Atf1;;chr2:146047829..146047847,+!p1@Insm1!0.06!1.02!Insm1;;chr2:153067138..153067147,-!p3@Plagl2!0.06!0.82!Plagl2;;chr15:25914138..25914146,+!p4@Zfp622!0.06!0.82!Zfp622;;chr4:133310214..133310231,-!p11@Arid1a!0.06!0.82!Arid1a;;chr3:51081392..51081407,-!p8@Elf2!0.06!0.82!Elf2;;chr11:69749320..69749345,+!p2@Ybx2!0.06!0.82!Ybx2;;chr8:108583683..108583693,+!p3@Nfatc3!0.06!0.61!Nfatc3;;chr3:9610233..9610247,-!p4@Zfp704!0.06!0.61!Zfp704;;chr4:87679181..87679192,-!p10@Mllt3!0.06!0.61!Mllt3;;chr5:104182694..104182724,+!p8@Aff1!0.06!0.41!Aff1;;chr3:30995296..30995300,+!p6@Skil!0.06!0.41!Skil;;chr2:38206580..38206600,+!p2@Lhx2!0.06!0.41!Lhx2;;chr17:27693622..27693635,+!p11@Hmga1-rs1,p12@Hmga1!0.06!0.41!Hmga1;;chr15:79178029..79178044,+!p4@Maff!0.06!0.41!Maff;;chr7:25292033..25292043,+!p9@Zfp428!0.06!0.41!Zfp428;;chr7:52960700..52960719,+!p2@Dbp!0.06!0.41!Dbp;;chr7:31741624..31741643,-!p7@LOC100504922,p7@Usf2!0.06!0.41!Usf2;;chr3:151873433..151873498,+!p1@Fubp1!0.05!135.16!Fubp1;;chr7:51809271..51809325,-!p1@Nr1h2!0.05!56.15!Nr1h2;;chr5:125343044..125343141,+!p1@Zfp664!0.05!43.90!Zfp664;;chr12:112277544..112277610,+!p1@Rcor1!0.05!37.36!Rcor1;;chr12:117285924..117286018,+!p1@Zfp386!0.05!27.97!Zfp386;;chr7:13420322..13420401,+!p1@Zfp110!0.05!19.80!Zfp110;;chr11:96690797..96690813,-!p1@Nfe2l1!0.05!18.99!Nfe2l1;;chr15:76181777..76181802,+!p2@Maf1!0.05!15.72!Maf1;;chr7:134758740..134758783,-!p1@Zfp629!0.05!13.88!Zfp629;;chr2:32218712..32218782,+!p2@Ciz1!0.05!9.60!Ciz1;;chr18:39649430..39649522,-!p2@Nr3c1!0.05!9.19!Nr3c1;;chr12:12948633..12948651,-!p1@Mycn!0.05!8.98!Mycn;;chr10:114821807..114821852,-!p2@Thap2!0.05!6.13!Thap2;;chr12:112088483..112088512,+!p1@Zfp839!0.05!5.10!Zfp839;;chr2:181100154..181100181,+!p3@Zgpat!0.05!4.29!Zgpat;;chr5:65194602..65194613,+!p3@Klf3!0.05!3.68!Klf3;;chr9:20385740..20385777,+!p2@Zfp846!0.05!2.86!Zfp846;;chr7:7124057..7124084,+!p1@Zfp418!0.05!2.65!Zfp418;;
+|ffid_belonging_in_development=CL:0000223
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |has_quality=
 |id=FF:12230-129F7
-|is_a=EFO:0002091;;FF:0000002;;FF:0000079;;FF:0000103
+|is_a=EFO:0002091;;FF:0000079
+|is_obsolete=
+|library_id=CNhs12557
+|library_id_phase_based=2:CNhs12557
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;12230
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;12230
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.LQhCAGE/Lgr5%2520positive%2520intestinal%2520stem%2520cells%252c%2520pool3.CNhs12557.12230-129F7.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.LQhCAGE/Lgr5%2520positive%2520intestinal%2520stem%2520cells%252c%2520pool3.CNhs12557.12230-129F7.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.LQhCAGE/Lgr5%2520positive%2520intestinal%2520stem%2520cells%252c%2520pool3.CNhs12557.12230-129F7.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.LQhCAGE/Lgr5%2520positive%2520intestinal%2520stem%2520cells%252c%2520pool3.CNhs12557.12230-129F7.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.LQhCAGE/Lgr5%2520positive%2520intestinal%2520stem%2520cells%252c%2520pool3.CNhs12557.12230-129F7.mm9.nobarcode.rdna.fa.gz
 |name=Lgr5 positive intestinal stem cells, pool3
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12557,LSID921,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=0.235280995984586,0,0,0,0,0,-0.432450997057084,0,0,0,0,-0.0843392403965415,0,0,0,0,0.0403437855364229,0,-0.111205779809729,0,0,0,0.385460679018311,0,0,0,0,0,0,0,0,0.0743535586849235,-0.172962113305721,0,0.0806875710728457,0,0,-0.0345619503778473,0.000931967075841506,-0.137849548220107,-0.0403838733781079,-0.984211366477826,-0.269868638010351,0.0806875710728457,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0.164654941384709,0,-0.0010576557202453,0,0,-0.0143339043261013,-0.112272188370735,-0.0051172703719799,-0.158091042771083,-0.0365927089968535,0,-0.0780086007519514,-0.0882821213223128,0,0,0,-0.0581428626750421,-0.122670995402895,-0.447207763370723,-0.0788315948399074,0,0,0,0,0,0.207501896467584,-0.147681830935052,-0.502591426001918,-0.125708268461184,0,0,0,0,0
 |rna_box=129
 |rna_catalog_number=
@@ Line 57: / Line 76: @@
 |rna_weight_ug=1.7523
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 76: / Line 96: @@
 |sample_tissue=small intestine
 |top_motifs=bHLH_family:2.89437490549;ZEB1:2.09748439147;PAX8:1.73924580412;NFY{A,B,C}:1.67980343034;FOXN1:1.5430942589;E2F1..5:1.49134799795;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.45194527689;YY1:1.41904138878;ELK1,4_GABP{A,B1}:1.39068289665;SNAI1..3:1.33221560767;PDX1:1.26480898187;CREB1:1.24666595186;NFIX:1.24646530445;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.20161640653;HNF1A:1.12494105308;STAT1,3:1.08981302938;ATF4:1.08481660882;HNF4A_NR2F1,2:1.06278102858;ZNF143:1.03463864762;ATF5_CREB3:1.01692135809;NR6A1:1.00304754474;LMO2:0.935548729062;HES1:0.850249043757;STAT5{A,B}:0.842585470023;PAX2:0.78765094059;NFKB1_REL_RELA:0.770340333741;NANOG:0.766859095346;ADNP_IRX_SIX_ZHX:0.757860833785;ARID5B:0.690899464669;LEF1_TCF7_TCF7L1,2:0.605122916109;MYB:0.595349290249;HSF1,2:0.579302312303;OCT4_SOX2{dimer}:0.574275107948;ESRRA:0.53353747422;GFI1:0.498858571384;ONECUT1,2:0.489612011428;CRX:0.464716927446;SOX17:0.455376576211;AR:0.448995046979;CDX1,2,4:0.412629126043;POU2F1..3:0.303585139903;ATF6:0.302393852776;TP53:0.302238365772;NR5A1,2:0.291816783797;FOX{I1,J2}:0.284393240344;TLX2:0.262421198807;GATA6:0.255266505994;GTF2A1,2:0.242785420111;STAT2,4,6:0.241899260896;NFIL3:0.232784251828;T:0.231194416696;JUN:0.229664444686;IRF1,2:0.211028315688;PPARG:0.210868592371;NKX6-1,2:0.192519711306;MYOD1:0.179854046672;RBPJ:0.161030168327;FOXL1:0.155138873554;ELF1,2,4:0.127604938876;FOX{D1,D2}:0.124057410585;FOSL2:0.0796981258056;NRF1:0.0670887158258;NFE2L1:0.0584288455305;BACH2:0.046065475471;SOX{8,9,10}:0.0409487746455;FOXQ1:0.0349942903491;ETS1,2:0.0200008951993;VSX1,2:0.00714587483443;FOXA2:0.00565984802914;SP1:0.00135712904212;DMAP1_NCOR{1,2}_SMARC:-0.034609599964;FOS_FOS{B,L1}_JUN{B,D}:-0.0840367835762;HOX{A5,B5}:-0.0888911947511;TBP:-0.0934464770539;IRF7:-0.100356361233;AHR_ARNT_ARNT2:-0.119969772367;POU3F1..4:-0.143455715545;PAX5:-0.156577405221;PAX6:-0.166906531529;FOXM1:-0.169042935011;SRF:-0.172096862532;ALX4:-0.176616940588;AIRE:-0.183666818671;BREu{core}:-0.188918880958;PBX1:-0.20129872848;HIF1A:-0.206378299019;TBX4,5:-0.222674742488;RFX2..5_RFXANK_RFXAP:-0.235654827038;FOXO1,3,4:-0.242434346035;POU6F1:-0.271615989437;CDC5L:-0.276599584082;ZBTB16:-0.295010512427;FOX{F1,F2,J1}:-0.301784677425;RORA:-0.303711614384;LHX3,4:-0.329990802255;POU5F1:-0.370444682869;SOX2:-0.382389537877;GZF1:-0.390697703166;RFX1:-0.39158796931;HBP1_HMGB_SSRP1_UBTF:-0.396067021643;TFDP1:-0.40591899363;NFE2:-0.423133533209;RUNX1..3:-0.431455767014;MEF2{A,B,C,D}:-0.451293456412;HOX{A4,D4}:-0.476844782312;HLF:-0.495160236741;ZNF423:-0.512018126796;RXRA_VDR{dimer}:-0.54318471815;FOXD3:-0.545919504431;SPI1:-0.56011289386;XCPE1{core}:-0.56676984566;BPTF:-0.572012889223;NKX2-2,8:-0.601769719309;TEAD1:-0.602762758486;TEF:-0.645523601397;MED-1{core}:-0.653933017636;EN1,2:-0.658375759264;TLX1..3_NFIC{dimer}:-0.676155356661;NR1H4:-0.691031758333;NR3C1:-0.692275723584;CUX2:-0.693669090547;ZFP161:-0.708467506218;FOXP3:-0.715795039719;NKX2-3_NKX2-5:-0.717759408515;RXR{A,B,G}:-0.719580943074;ZBTB6:-0.751366189011;SPIB:-0.759365219509;REST:-0.773534336112;CEBPA,B_DDIT3:-0.800447528298;PRRX1,2:-0.807457653788;GFI1B:-0.84044231853;ATF2:-0.857018907738;NFE2L2:-0.871962442386;NANOG{mouse}:-0.873678191642;PAX1,9:-0.896289951746;TOPORS:-0.897587316552;HOXA9_MEIS1:-0.905043535188;NKX3-1:-0.912414401502;ZNF384:-0.961433804465;DBP:-0.967831586785;PITX1..3:-0.980477076093;HIC1:-1.00408226149;MTF1:-1.03572237698;POU1F1:-1.03585570569;SREBF1,2:-1.06264686936;GCM1,2:-1.08747641792;KLF4:-1.13314455889;FOXP1:-1.13419147148;ZNF238:-1.15309409242;GTF2I:-1.1564923528;TFAP2{A,C}:-1.1875221211;TFAP2B:-1.19727776286;UFEwm:-1.19831663302;GLI1..3:-1.21883974008;HMX1:-1.24025385786;EP300:-1.26650072573;EBF1:-1.2967285676;MYBL2:-1.31375076274;MAFB:-1.31887717304;EGR1..3:-1.32660977704;ZIC1..3:-1.34194379985;HMGA1,2:-1.35977293811;MAZ:-1.38711804088;SPZ1:-1.39354816917;PAX4:-1.40125960009;NKX2-1,4:-1.40629438865;SOX5:-1.45891339574;NHLH1,2:-1.46454862448;MYFfamily:-1.49579916344;MZF1:-1.52234868752;PRDM1:-1.53055856785;TFCP2:-1.55626754046;TAL1_TCF{3,4,12}:-1.56147127437;PATZ1:-1.56578349381;NKX3-2:-1.59416419678;TGIF1:-1.59734725899;TFAP4:-1.62489703035;NFATC1..3:-1.63843968003;IKZF1:-1.65605360088;MTE{core}:-1.68232319617;ESR1:-1.69225133578;ZNF148:-1.70243261467;HAND1,2:-1.72362765679;ALX1:-1.72746241528;RREB1:-1.76157964361;EVI1:-1.8076946973;IKZF2:-2.01203809986;GATA4:-2.07297608387;SMAD1..7,9:-2.09440796466
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:12230-129F7;search_select_hide=table117:12230-129F7
 }}

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FF:12230-129F7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:35, 4 June 2020

CNhs12557

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0