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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004121!1.31e-26!95;UBERON:0000924!1.31e-26!95;UBERON:0006601!1.31e-26!95;UBERON:0001016!4.54e-24!75;UBERON:0000073!4.86e-22!54;UBERON:0001017!2.56e-21!73;UBERON:0010371!1.66e-20!73;UBERON:0002346!8.25e-20!64;UBERON:0003075!8.25e-20!64;UBERON:0007284!8.25e-20!64;UBERON:0001049!2.81e-19!52;UBERON:0005068!2.81e-19!52;UBERON:0006241!2.81e-19!52;UBERON:0007135!2.81e-19!52;UBERON:0000955!4.42e-15!47;UBERON:0006238!4.42e-15!47;UBERON:0010314!1.42e-14!92;UBERON:0002616!6.11e-14!46;UBERON:0002020!1.13e-13!34;UBERON:0003056!7.14e-12!49;UBERON:0003076!7.77e-12!12;UBERON:0003057!7.77e-12!12;UBERON:0002021!1.76e-10!10;UBERON:0000411!1.76e-10!10;UBERON:0001950!1.76e-10!10;UBERON:0003080!4.37e-10!40;UBERON:0003528!7.63e-10!29;UBERON:0002791!7.63e-10!29;UBERON:0001893!7.63e-10!29;UBERON:0002780!5.24e-09!39;UBERON:0001890!5.24e-09!39;UBERON:0006240!5.24e-09!39;UBERON:0002950!9.40e-09!4;UBERON:0001891!9.40e-09!4;UBERON:0009616!9.40e-09!4;UBERON:0010286!9.40e-09!4;UBERON:0002240!1.34e-07!6;UBERON:0005174!1.34e-07!6;UBERON:0001137!1.34e-07!6;UBERON:0002619!3.40e-07!17;UBERON:0004684!3.53e-07!3;UBERON:0002275!3.53e-07!3;UBERON:0002038!6.35e-07!3;UBERON:0009663!6.35e-07!3;UBERON:0009661!6.35e-07!3;UBERON:0000125!6.35e-07!3;UBERON:0002308!6.35e-07!3;UBERON:0000956!6.50e-07!21;UBERON:0001869!6.50e-07!21;UBERON:0000203!6.50e-07!21
|ontology_enrichment_uberon=UBERON:0004121!1.31e-26!95;UBERON:0000924!1.31e-26!95;UBERON:0006601!1.31e-26!95;UBERON:0001016!4.54e-24!75;UBERON:0000073!4.86e-22!54;UBERON:0001017!2.56e-21!73;UBERON:0010371!1.66e-20!73;UBERON:0002346!8.25e-20!64;UBERON:0003075!8.25e-20!64;UBERON:0007284!8.25e-20!64;UBERON:0001049!2.81e-19!52;UBERON:0005068!2.81e-19!52;UBERON:0006241!2.81e-19!52;UBERON:0007135!2.81e-19!52;UBERON:0000955!4.42e-15!47;UBERON:0006238!4.42e-15!47;UBERON:0010314!1.42e-14!92;UBERON:0002616!6.11e-14!46;UBERON:0002020!1.13e-13!34;UBERON:0003056!7.14e-12!49;UBERON:0003076!7.77e-12!12;UBERON:0003057!7.77e-12!12;UBERON:0002021!1.76e-10!10;UBERON:0000411!1.76e-10!10;UBERON:0001950!1.76e-10!10;UBERON:0003080!4.37e-10!40;UBERON:0003528!7.63e-10!29;UBERON:0002791!7.63e-10!29;UBERON:0001893!7.63e-10!29;UBERON:0002780!5.24e-09!39;UBERON:0001890!5.24e-09!39;UBERON:0006240!5.24e-09!39;UBERON:0002950!9.40e-09!4;UBERON:0001891!9.40e-09!4;UBERON:0009616!9.40e-09!4;UBERON:0010286!9.40e-09!4;UBERON:0002240!1.34e-07!6;UBERON:0005174!1.34e-07!6;UBERON:0001137!1.34e-07!6;UBERON:0002619!3.40e-07!17;UBERON:0004684!3.53e-07!3;UBERON:0002275!3.53e-07!3;UBERON:0002038!6.35e-07!3;UBERON:0009663!6.35e-07!3;UBERON:0009661!6.35e-07!3;UBERON:0000125!6.35e-07!3;UBERON:0002308!6.35e-07!3;UBERON:0000956!6.50e-07!21;UBERON:0001869!6.50e-07!21;UBERON:0000203!6.50e-07!21
|tfbs_overrepresentation_for_novel_motifs=0.641384,0.128156,0.612053,0.688265,0.483253,0.704257,0.803568,0.370124,0.993085,0.489964,0.755749,1.85721,0.37041,0.81685,0.502646,0,1.02248,0.473993,1.65947,0.24402,0.570433,0.197567,0.815872,0.481455,0.620553,0.846564,0.342316,0.727368,0.535752,0.790816,0.711848,1.12823,0.471365,0.854272,0.503207,0.089443,0.460474,0.786577,0.434783,0.40068,0.478558,0.717547,0.185353,0.504971,0.0986756,0.675898,0.938241,0.744678,0.162985,0.539131,1.0041,0.875451,0.771943,1.2746,1.29252,0.82458,0.549352,0.776619,0.331485,0.822375,1.10737,0.885556,0.39557,0.992216,0.8366,1.03484,1.43193,1.78579,1.1025,1.63712,0.590754,0.377213,0.205546,1.32691,0.323563,0.310084,0.318792,0.926147,1.08947,0.575233,0.37865,1.04072,0.884013,2.55477,1.20828,0.11855,0.129654,0.290918,0.943446,1.94914,1.50286,1.21342,1.14153,1.22838,0.430015,0.409166,0.367176,1.14445,0.938512,0.264911,0.460566,1.12793,1.25667,1.00472,1.00361,0.717061,1.06633,0.740267,0.580757,0.57247,1.53136,1.25851,1.41174,0.7614,1.51002,0.476467,0.143825,0.692434,1.02384,1.15537,1.33244,2.22508,0.848526,0.925183,1.56496,1.09333,0.812403,1.13449,1.43038,2.1398,1.23918,0.680176,1.40022,0.839311,1.53196,0.195549,0.650785,0.719099,1.482,2.31884,1.91709,1.43673,0.861473,1.1391,2.27949,0.718046,2.16691,2.27909,0.653418,0.485304,0.293812,0.184289,1.27621,0.416214,0.838313,1.35996,0.87653,0.516549,0.63863,0.650472,1.49167,1.20739,1.09379,0.630949,2.27239,0.830321,0.459159,0.788782,0.992915
}}
}}

Revision as of 21:20, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr3:95912444..95912454,+p@chr3:95912444..95912454
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Mm9::chr3:95912457..95912489,+p@chr3:95912457..95912489
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Mm9::chr3:95912492..95912509,+p@chr3:95912492..95912509
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Mm9::chr3:95912511..95912535,+p@chr3:95912511..95912535
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
ectodermal cell2.58e-0744
neurectodermal cell2.58e-0744
raphe nuclei neuron3.53e-073
neuron of the substantia nigra6.35e-073
supportive cell6.64e-073

Uber Anatomy
Ontology termp-valuen
ectoderm-derived structure1.31e-2695
ectoderm1.31e-2695
presumptive ectoderm1.31e-2695
nervous system4.54e-2475
regional part of nervous system4.86e-2254
central nervous system2.56e-2173
ecto-epithelium1.66e-2073
neurectoderm8.25e-2064
neural plate8.25e-2064
presumptive neural plate8.25e-2064
neural tube2.81e-1952
neural rod2.81e-1952
future spinal cord2.81e-1952
neural keel2.81e-1952
brain4.42e-1547
future brain4.42e-1547
structure with developmental contribution from neural crest1.42e-1492
regional part of brain6.11e-1446
gray matter1.13e-1334
pre-chordal neural plate7.14e-1249
posterior neural tube7.77e-1212
chordal neural plate7.77e-1212
occipital lobe1.76e-1010
visual cortex1.76e-1010
neocortex1.76e-1010
anterior neural tube4.37e-1040
brain grey matter7.63e-1029
regional part of telencephalon7.63e-1029
telencephalon7.63e-1029
regional part of forebrain5.24e-0939
forebrain5.24e-0939
future forebrain5.24e-0939
regional part of midbrain9.40e-094
midbrain9.40e-094
presumptive midbrain9.40e-094
midbrain neural tube9.40e-094
spinal cord1.34e-076
dorsal region element1.34e-076
dorsum1.34e-076
regional part of cerebral cortex3.40e-0717
raphe nuclei3.53e-073
reticular formation3.53e-073
substantia nigra6.35e-073
telencephalic nucleus6.35e-073
midbrain nucleus6.35e-073
neural nucleus6.35e-073
nucleus of brain6.35e-073
cerebral cortex6.50e-0721
cerebral hemisphere6.50e-0721
pallium6.50e-0721


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}