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MCL coexpression mm9:121

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Phase1 CAGE Peaks

  Short description
Mm9::chr10:10800785..10800821,- p3@Grm1
Mm9::chr10:69169067..69169072,+ p44@Ank3
Mm9::chr10:69169074..69169130,+ p4@Ank3
Mm9::chr11:114953151..114953171,+ p3@Rab37
Mm9::chr11:118063929..118063943,- p9@Cyth1
Mm9::chr11:41993156..41993185,- -
p@chr11:41993156..41993185
Mm9::chr11:41993192..41993227,- p@chr11:41993192..41993227
-
Mm9::chr11:41995595..41995606,- p8@Gabra1
Mm9::chr11:41996426..41996437,- p12@Gabra1
Mm9::chr11:60835625..60835663,+ p3@Kcnj12
Mm9::chr11:61267018..61267055,- p@chr11:61267018..61267055
-
Mm9::chr11:76391508..76391521,- p25@Abr
Mm9::chr11:76391527..76391550,- p26@Abr
Mm9::chr11:78136467..78136498,+ p10@Aldoc
Mm9::chr11:87394547..87394569,+ p2@Sept4
Mm9::chr11:97408516..97408538,- p@chr11:97408516..97408538
-
Mm9::chr12:109648835..109648872,+ p8@Eml1
Mm9::chr12:11443304..11443315,- p3@Vsnl1
Mm9::chr12:91050907..91050928,+ p2@LOC100505240
p3@Nrxn3
Mm9::chr13:109906367..109906396,+ p20@Pde4d
Mm9::chr13:109906401..109906412,+ p46@Pde4d
Mm9::chr14:50403002..50403069,- p1@3632451O06Rik
Mm9::chr15:22478819..22478837,+ p3@Cdh18
Mm9::chr15:76351334..76351349,+ p@chr15:76351334..76351349
+
Mm9::chr15:78034658..78034669,- p3@Pvalb
Mm9::chr15:78034859..78034880,- p4@Pvalb
Mm9::chr15:82086756..82086763,+ p4@1500009C09Rik
Mm9::chr15:89354121..89354141,- p1@ENSMUST00000155610
Mm9::chr15:89354138..89354174,+ p@chr15:89354138..89354174
+
Mm9::chr16:17489732..17489776,+ p1@Aifm3
Mm9::chr16:17489784..17489796,+ p4@Aifm3
Mm9::chr16:41533441..41533473,+ p5@Lsamp
Mm9::chr17:35153521..35153549,+ p2@D17H6S56E-3
Mm9::chr18:31476636..31476645,- p7@Rit2
Mm9::chr18:36124742..36124764,+ p2@Psd2
Mm9::chr1:173310275..173310297,+ p@chr1:173310275..173310297
+
Mm9::chr1:180728527..180728558,+ p4@Kif26b
Mm9::chr1:180728579..180728598,+ p5@Kif26b
Mm9::chr1:189475390..189475413,+ p@chr1:189475390..189475413
+
Mm9::chr1:66514486..66514568,+ p1@Unc80
Mm9::chr1:78306952..78306961,+ p3@Sgpp2
Mm9::chr1:78306966..78306975,+ p2@Sgpp2
Mm9::chr1:83404605..83404615,- p5@Sphkap
Mm9::chr2:135485029..135485093,+ p1@Plcb4
Mm9::chr2:25284237..25284250,+ p3@Abca2
Mm9::chr2:52414059..52414091,- p1@Cacnb4
Mm9::chr2:52414098..52414121,- p4@Cacnb4
Mm9::chr2:70401375..70401387,+ p10@Gad1
Mm9::chr3:106904185..106904199,+ p3@Kcna2
Mm9::chr3:114607131..114607142,+ p7@Olfm3
Mm9::chr3:114607156..114607183,+ p4@Olfm3
Mm9::chr3:115711293..115711320,+ p3@Extl2
Mm9::chr3:58809735..58809787,+ p1@Med12l
Mm9::chr4:123204925..123204955,- p4@Macf1
Mm9::chr4:123363950..123363972,- p@chr4:123363950..123363972
-
Mm9::chr4:133053687..133053703,- p4@Trnp1
Mm9::chr4:155068564..155068632,+ p2@B930041F14Rik
Mm9::chr4:43532917..43532931,- p8@Tpm2
Mm9::chr4:98213322..98213346,+ p10@Inadl
Mm9::chr4:98213353..98213380,+ p9@Inadl
Mm9::chr4:98213387..98213400,+ p14@Inadl
Mm9::chr4:98213401..98213430,+ p6@Inadl
Mm9::chr4:98213437..98213454,+ p13@Inadl
Mm9::chr4:98213488..98213496,+ p19@Inadl
Mm9::chr4:98213588..98213600,+ p15@Inadl
Mm9::chr4:98213610..98213650,+ p8@Inadl
Mm9::chr5:121459010..121459026,- p@chr5:121459010..121459026
-
Mm9::chr5:121459642..121459653,- p8@Rph3a
Mm9::chr5:151062731..151062836,+ p2@Fry
Mm9::chr5:27231168..27231211,+ p6@Dpp6
Mm9::chr5:27231436..27231454,+ p13@Dpp6
Mm9::chr6:21165331..21165353,+ p3@Kcnd2
Mm9::chr7:114514259..114514362,+ p1@Syt9
Mm9::chr7:147080756..147080765,+ p4@Kndc1
Mm9::chr7:147080886..147080947,+ p3@Kndc1
Mm9::chr7:51846256..51846275,+ p@chr7:51846256..51846275
+
Mm9::chr7:51846276..51846287,+ p@chr7:51846276..51846287
+
Mm9::chr7:51857960..51857971,+ p@chr7:51857960..51857971
+
Mm9::chr7:51858002..51858013,+ p@chr7:51858002..51858013
+
Mm9::chr7:53651809..53651909,+ p1@Kcnc1
Mm9::chr7:53651910..53651927,+ p3@Kcnc1
Mm9::chr7:70589627..70589648,+ p3@Otud7a
Mm9::chr7:99383645..99383654,+ p31@Dlg2
Mm9::chr8:107873195..107873269,+ p@chr8:107873195..107873269
+
Mm9::chr8:112692104..112692121,- p1@Calb2
Mm9::chr8:122159367..122159378,- p4@Kcng4
Mm9::chr8:122159391..122159405,- p3@Kcng4
Mm9::chr8:122159411..122159436,- p1@Kcng4
Mm9::chr8:12915677..12915690,+ p17@Mcf2l
Mm9::chr8:24085318..24085354,+ p5@Ank1
Mm9::chr9:62384774..62384793,- p4@Coro2b
Mm9::chr9:73816477..73816516,- p@chr9:73816477..73816516
-
Mm9::chr9:73816838..73816852,- p@chr9:73816838..73816852
-
Mm9::chr9:73816906..73816916,- p@chr9:73816906..73816916
-
Mm9::chr9:86775482..86775494,- p2@Snap91
Mm9::chr9:86775533..86775547,- p4@Snap91
Mm9::chrX:154481337..154481357,- p4@Cnksr2
Mm9::chrX:35917464..35917511,- p5@Cul4b


Enriched pathways on this co-expression clusterSummary:
Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.
Analyst: Emmanuel Dimont

link to source dataset
data


GO IDGO nameFDR corrected p-value
GO:0022832voltage-gated channel activity5.46281443824709e-05
GO:0005244voltage-gated ion channel activity5.46281443824709e-05
GO:0022836gated channel activity5.46281443824709e-05
GO:0030955potassium ion binding5.46281443824709e-05
GO:0022843voltage-gated cation channel activity5.9829521478415e-05
GO:0005267potassium channel activity6.71191036190638e-05
GO:0005249voltage-gated potassium channel activity0.00015813775218387
GO:0006813potassium ion transport0.00015813775218387
GO:0005216ion channel activity0.00015813775218387
GO:0005261cation channel activity0.00015813775218387
GO:0006810transport0.00015813775218387
GO:0022838substrate specific channel activity0.00015813775218387
GO:0022803passive transmembrane transporter activity0.000195089637245008
GO:0015267channel activity0.000195089637245008
GO:0051234establishment of localization0.000218965924341008
GO:0031420alkali metal ion binding0.000218965924341008
GO:0046873metal ion transmembrane transporter activity0.000263444165235286
GO:0015672monovalent inorganic cation transport0.00026649576210231
GO:0008076voltage-gated potassium channel complex0.000333300568543689
GO:0043005neuron projection0.000342850293387198
GO:0008324cation transmembrane transporter activity0.000558767405071703
GO:0006812cation transport0.000559009696202542
GO:0015075ion transmembrane transporter activity0.000663243161274155
GO:0043167ion binding0.000726330344422852
GO:0042995cell projection0.00090387629864619
GO:0030001metal ion transport0.00132177725210837
GO:0006811ion transport0.00132679391348319
GO:0044459plasma membrane part0.00132933184711388
GO:0051179localization0.00133691254368944
GO:0022891substrate-specific transmembrane transporter activity0.00151817430017536
GO:0043169cation binding0.00164606578510599
GO:0005545phosphatidylinositol binding0.00164786492295682
GO:0046872metal ion binding0.00164786492295682
GO:0022857transmembrane transporter activity0.00405279853373158
GO:0030425dendrite0.00406690208467772
GO:0005515protein binding0.00420244736733918
GO:0014069postsynaptic density0.00622400578360955
GO:0030054cell junction0.00659649385206174
GO:0022892substrate-specific transporter activity0.00689964330255904
GO:0005886plasma membrane0.0119286533258434
GO:0007214gamma-aminobutyric acid signaling pathway0.0143826498396056
GO:0046058cAMP metabolic process0.0155740918566217
GO:0007268synaptic transmission0.0188610732759983
GO:0005856cytoskeleton0.0196214632416289
GO:0016020membrane0.0273462867634298
GO:0005737cytoplasm0.0278059016086383
GO:0050682AF-2 domain binding0.0281217401221158
GO:0048541Peyer's patch development0.0281217401221158
GO:0006198cAMP catabolic process0.0281217401221158
GO:0019226transmission of nerve impulse0.0299797907650224
GO:0044456synapse part0.0406339083788362
GO:0005509calcium ion binding0.0407723461329136
GO:0009187cyclic nucleotide metabolic process0.0420470992409571
GO:0016830carbon-carbon lyase activity0.0434883847637617
GO:0014051gamma-aminobutyric acid secretion0.0458730364726849
GO:0001566non-kinase phorbol ester receptor activity0.0458730364726849
GO:0001639PLC activating metabotropic glutamate receptor activity0.0458730364726849
GO:0004351glutamate decarboxylase activity0.0458730364726849
GO:0048537mucosal-associated lymphoid tissue development0.0458730364726849
GO:0001888glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity0.0458730364726849



Relative expression of the co-expression cluster over median
Analyst:





Enriched sample ontology terms on this co-expression clusterSummary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji

links to source dataset

cell_data
uberon_data


Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)2.62e-1323
neuroblast (sensu Vertebrata)2.62e-1323
neuron1.43e-0833
neuronal stem cell1.43e-0833
neuroblast1.43e-0833
electrically signaling cell1.43e-0833

Uber Anatomy
Ontology termp-valuen
regional part of nervous system4.59e-3254
neurectoderm5.60e-3064
neural plate5.60e-3064
presumptive neural plate5.60e-3064
neural tube1.36e-2952
neural rod1.36e-2952
future spinal cord1.36e-2952
neural keel1.36e-2952
central nervous system3.47e-2773
ecto-epithelium8.00e-2773
nervous system4.77e-2675
ectoderm-derived structure7.47e-2595
ectoderm7.47e-2595
presumptive ectoderm7.47e-2595
brain1.78e-2447
future brain1.78e-2447
regional part of brain2.25e-2346
pre-chordal neural plate1.55e-2249
gray matter4.05e-2234
anterior neural tube4.12e-2040
regional part of forebrain5.81e-1939
forebrain5.81e-1939
future forebrain5.81e-1939
structure with developmental contribution from neural crest3.73e-1892
brain grey matter2.85e-1729
regional part of telencephalon2.85e-1729
telencephalon2.85e-1729
occipital lobe9.76e-1210
visual cortex9.76e-1210
neocortex9.76e-1210
regional part of cerebral cortex3.98e-1117
posterior neural tube5.02e-1012
chordal neural plate5.02e-1012
cerebral cortex8.69e-1021
cerebral hemisphere8.69e-1021
pallium8.69e-1021
basal ganglion1.77e-098
nuclear complex of neuraxis1.77e-098
aggregate regional part of brain1.77e-098
collection of basal ganglia1.77e-098
cerebral subcortex1.77e-098
spinal cord1.66e-076
dorsal region element1.66e-076
dorsum1.66e-076
tube8.35e-07114


TFBS overrepresentationSummary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon

link to source data
Novel motifs
data

Jaspar motifs
data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.15.62953
MA0004.10.18062
MA0006.11.79907
MA0007.10.27446
MA0009.10.0806825
MA0014.14.35187
MA0017.10.0662239
MA0019.11.60395
MA0024.10.49814
MA0025.10.19779
MA0027.11.43681
MA0028.10.00888208
MA0029.10.0573756
MA0030.10.215554
MA0031.10.182492
MA0038.11.82025
MA0040.10.605189
MA0041.10.0129885
MA0042.10.0695665
MA0043.10.123091
MA0046.10.316256
MA0048.12.12406
MA0050.10.0566426
MA0051.10.0547903
MA0052.10.0889204
MA0055.110.223
MA0056.10
MA0057.10.931572
MA0058.10.0275031
MA0059.10.142301
MA0060.10.452108
MA0061.10.0156598
MA0063.10
MA0066.10.459646
MA0067.10.269528
MA0068.10.377851
MA0069.10.299173
MA0070.10.0851203
MA0071.10.246768
MA0072.10.27905
MA0073.13.18862e-07
MA0074.10.0974054
MA0076.10.00119172
MA0077.10.0734884
MA0078.10.0709295
MA0081.10.29812
MA0083.10.122707
MA0084.10.522943
MA0087.10.686529
MA0088.11.11496
MA0089.10
MA0090.10.547412
MA0091.11.64445
MA0092.10.372271
MA0093.10.109454
MA0095.10
MA0098.10
MA0100.10.0295627
MA0101.10.037528
MA0103.11.09366
MA0105.10.432404
MA0106.10.0751009
MA0107.10.129427
MA0108.20.0317826
MA0109.10
MA0111.10.0289029
MA0113.10.0606434
MA0114.10.0612717
MA0115.10.124455
MA0116.13.91387
MA0117.10.3532
MA0119.13.46433
MA0122.10.37747
MA0124.11.91058
MA0125.10.188095
MA0130.10
MA0131.10.497478
MA0132.10
MA0133.10
MA0135.10.141399
MA0136.10.11423
MA0139.12.0937
MA0140.10.0882536
MA0141.10.281717
MA0142.11.49875
MA0143.10.591128
MA0144.11.01647
MA0145.12.05667
MA0146.10.922027
MA0147.11.36657
MA0148.10.349921
MA0149.13.99179
MA0062.20.00178346
MA0035.20.00561865
MA0039.20.302202
MA0138.20.77244
MA0002.20.00300962
MA0137.20.171324
MA0104.21.3787
MA0047.20.0505277
MA0112.21.65581
MA0065.20.108694
MA0150.10.624869
MA0151.10
MA0152.10.0101247
MA0153.10.150162
MA0154.12.30496
MA0155.11.1006
MA0156.10.0171784
MA0157.10.0360573
MA0158.10
MA0159.10.0956886
MA0160.10.0460532
MA0161.10
MA0162.12.04065
MA0163.13.65242
MA0164.10.420676
MA0080.20.0343584
MA0018.20.123332
MA0099.20.247225
MA0079.24.51671
MA0102.20.567661
MA0258.11.51094
MA0259.10.374966
MA0442.10