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{{f5samples
 
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0001758,UBERON:0002384,UBERON:0003672
+
|DRA_sample_Accession=CAGE@SAMD00005091
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002556
+
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005091
 +
|accession_numbers=CAGE;DRX008274;DRR009146;DRZ000571;DRZ001956;DRZ011921;DRZ013306
 +
|accession_numbers_RNASeq=sRNA-Seq;DRX037092;DRR041458;DRZ007100
 +
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0011216,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0010317,UBERON:0001555,UBERON:0001758,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0000165,UBERON:0003672,UBERON:0011137,UBERON:0010323,UBERON:0003129
 +
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002556
 
|ancestors_in_disease_facet=
 
|ancestors_in_disease_facet=
 +
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000067
 
|comment=
 
|comment=
 
|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
 +
|data_phase=2
 +
|datafreeze_phase=2
 
|def=
 
|def=
 +
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!2.00!110.26!PRRX1;;chr6:34204921..34204939,+!p3@HMGA1!1.79!1691.10!HMGA1;;chr1:170633348..170633399,+!p2@PRRX1!1.76!76.59!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!1.67!45.28!HAND2;;chr15:57511609..57511651,+!p2@TCF12!1.66!74.40!TCF12;;chr14:37131058..37131139,+!p1@PAX9!1.63!41.58!PAX9;;chr12:66218255..66218304,+!p3@HMGA2!1.62!105.72!HMGA2;;chr16:86544113..86544145,+!p1@FOXF1!1.59!46.80!FOXF1;;chr20:55204351..55204377,+!p1@TFAP2C!1.53!41.92!TFAP2C;;chr14:61116183..61116208,-!p1@SIX1!1.52!117.67!SIX1;;chr6:1389789..1389821,+!p1@FOXF2!1.45!37.03!FOXF2;;chr2:239756671..239756732,+!p1@TWIST2!1.42!80.13!TWIST2;;chr4:4861385..4861398,+!p1@MSX1!1.41!72.05!MSX1;;chr12:66218598..66218645,+!p2@HMGA2!1.35!97.13!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.34!29.96!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!1.29!18.35!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.28!49.66!TWIST1;;chr12:66218183..66218209,+!p4@HMGA2!1.27!33.84!HMGA2;;chr2:239756739..239756755,+!p2@TWIST2!1.27!29.80!TWIST2;;chr12:115122318..115122331,-!p2@TBX3!1.27!17.51!TBX3;;chr1:170633262..170633285,+!p3@PRRX1!1.25!19.19!PRRX1;;chr2:200322654..200322707,-!p2@SATB2!1.22!22.89!SATB2;;chr9:96717629..96717644,-!p1@BARX1!1.16!13.30!BARX1;;chr7:14029283..14029311,-!p1@ETV1!1.15!69.52!ETV1;;chr9:132427883..132427951,+!p2@PRRX2!1.14!12.79!PRRX2;;chr4:299227..299272,-!p1@ZNF732!1.14!12.79!ZNF732;;chr1:170632477..170632506,+!p6@PRRX1!1.12!12.12!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.10!31.65!OSR1;;chr12:85673977..85674015,+!p1@ALX1!1.10!11.62!ALX1;;chr17:59477233..59477263,+!p1@TBX2!1.08!34.68!TBX2;;chr2:5832508..5832524,+!p1@SOX11!1.08!10.94!SOX11;;chr9:132427972..132428056,+!p1@PRRX2!1.07!13.97!PRRX2;;chr2:45236540..45236577,-!p1@SIX2!1.06!10.61!SIX2;;chr10:28034739..28034756,-!p1@MKX!1.06!10.44!MKX;;chr16:86600426..86600441,+!p1@FOXC2!1.05!25.25!FOXC2;;chr4:26322267..26322334,+!p3@RBPJ!1.02!23.40!RBPJ;;chr2:102091566..102091581,-!p1@RFX8!1.01!9.26!RFX8;;chr7:14028488..14028516,-!p2@ETV1!1.00!10.10!ETV1;;chr20:42543441..42543497,+!p1@TOX2!0.99!40.57!TOX2;;chr12:115122303..115122314,-!p6@TBX3!0.98!8.59!TBX3;;chrY:21906594..21906622,-!p1@KDM5D!0.98!8.59!KDM5D;;chr14:37126765..37126799,+!p2@PAX9!0.97!8.42!PAX9;;chr2:223163706..223163730,-!p1@PAX3!0.95!7.91!PAX3;;chr6:10415276..10415341,-!p2@TFAP2A!0.94!9.60!TFAP2A;;chr15:57511589..57511608,+!p4@TCF12!0.94!7.74!TCF12;;chr1:170632439..170632465,+!p11@PRRX1!0.94!7.74!PRRX1;;chr1:170632137..170632172,+!p10@PRRX1!0.93!7.58!PRRX1;;chr4:174450089..174450153,-!p2@HAND2!0.93!7.58!HAND2;;chr11:65667884..65667895,-!p2@FOSL1!0.91!28.79!FOSL1;;chr6:1389824..1389840,+!p3@FOXF2!0.91!7.07!FOXF2;;chr11:46299199..46299233,+!p1@CREB3L1!0.90!37.20!CREB3L1;;chr19:46801639..46801699,+!p1@HIF3A!0.90!6.90!HIF3A;;chr6:10412600..10412637,-!p1@TFAP2A!0.89!11.62!TFAP2A;;chr7:14029312..14029325,-!p4@ETV1!0.89!8.42!ETV1;;chr12:66218152..66218174,+!p10@HMGA2!0.88!7.07!HMGA2;;chr2:102091144..102091183,-!p2@RFX8!0.88!6.57!RFX8;;chr17:41623009..41623053,-!p4@ETV4!0.86!10.44!ETV4;;chr6:45296048..45296082,+!p1@RUNX2!0.86!7.24!RUNX2;;chr12:66218573..66218596,+!p7@HMGA2!0.85!9.26!HMGA2;;chr5:321810..321877,+!p1@AHRR!0.84!20.03!AHRR;;chr12:85674018..85674039,+!p3@ALX1!0.84!5.89!ALX1;;chr12:66218836..66218888,+!p1@HMGA2!0.83!57.74!HMGA2;;chr12:85673868..85673881,+!p2@ALX1!0.83!5.72!ALX1;;chr1:170632310..170632321,+!p15@PRRX1!0.83!5.72!PRRX1;;chr12:115121962..115121987,-!p1@TBX3!0.82!50.50!TBX3;;chr8:60031682..60031710,-!p2@TOX!0.82!9.43!TOX;;chr1:170632115..170632136,+!p9@PRRX1!0.82!5.56!PRRX1;;chr15:83953397..83953425,-!p1@BNC1!0.81!6.40!BNC1;;chr18:52969844..52969895,-!p27@TCF4!0.81!5.39!TCF4;;chr7:19157043..19157088,-!p2@TWIST1!0.80!14.31!TWIST1;;chr12:66218378..66218401,+!p6@HMGA2!0.80!8.59!HMGA2;;chr12:115121770..115121781,-!p4@TBX3!0.79!5.22!TBX3;;chr19:9609272..9609297,-!p1@ZNF560!0.79!5.22!ZNF560;;chr11:65667846..65667868,-!p1@FOSL1!0.78!144.43!FOSL1;;chr9:77112244..77112262,+!p1@RORB!0.78!5.72!RORB;;chr3:157823517..157823562,-!p1@SHOX2!0.78!5.39!SHOX2;;chrY:2803415..2803468,+!p1@ZFY!0.78!5.05!ZFY;;chr12:115121802..115121814,-!p5@TBX3!0.78!5.05!TBX3;;chr8:60031619..60031676,-!p1@TOX!0.77!11.11!TOX;;chr17:59477197..59477212,+!p2@TBX2!0.77!8.92!TBX2;;chr17:41622765..41622821,-!p2@ETV4!0.77!7.74!ETV4;;chr18:52969674..52969685,-!p24@TCF4!0.77!4.88!TCF4;;chr20:55205825..55205847,+!p2@TFAP2C!0.77!4.88!TFAP2C;;chr2:172949484..172949522,+!p1@DLX1!0.76!4.71!DLX1;;chr18:22932080..22932170,-!p1@ZNF521!0.75!21.55!ZNF521;;chr11:65686802..65686818,+!p6@DRAP1!0.75!8.59!DRAP1;;chr5:176738887..176738934,-!p1@MXD3!0.74!32.99!MXD3;;chr11:65686732..65686756,+!p2@DRAP1!0.74!21.04!DRAP1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.74!4.88!GLIS1;;chr2:95963052..95963106,+!p1@KCNIP3!0.74!4.55!KCNIP3;;chr4:174451350..174451363,-!p3@HAND2!0.74!4.55!HAND2;;chr6:34204973..34204990,+!p4@HMGA1!0.72!63.29!HMGA1;;chr17:59477275..59477286,+!p3@TBX2!0.72!5.89!TBX2;;chr8:93074803..93074845,-!p1@RUNX1T1!0.72!4.21!RUNX1T1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.72!4.21!PEG3;;chr1:75602043..75602093,+!p1@LHX8!0.72!4.21!LHX8;;chr17:41277372..41277418,-!p1@BRCA1!0.71!16.67!BRCA1;;chr14:61116168..61116180,-!p2@SIX1!0.71!4.88!SIX1;;chr12:66218420..66218439,+!p12@HMGA2!0.70!4.04!HMGA2;;chr8:60031934..60031986,-!p6@TOX!0.70!4.04!TOX;;chr11:46299539..46299620,+!p2@CREB3L1!0.69!7.07!CREB3L1;;chr12:66358080..66358094,+!p15@HMGA2!0.69!3.87!HMGA2;;chr3:141121847..141121868,+!p5@ZBTB38!0.68!6.06!ZBTB38;;chr17:41623692..41623715,-!p1@ETV4!0.67!18.01!ETV4;;chr8:60031809..60031835,-!p4@TOX!0.67!4.88!TOX;;chr8:60031840..60031869,-!p5@TOX!0.67!3.70!TOX;;chr8:93074848..93074871,-!p3@RUNX1T1!0.67!3.70!RUNX1T1;;chr17:41622731..41622764,-!p5@ETV4!0.67!3.70!ETV4;;chr1:170633058..170633084,+!p5@PRRX1!0.67!3.70!PRRX1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.67!3.70!POU3F3;;chr14:55493763..55493824,-!p1@WDHD1!0.66!31.31!WDHD1;;chr5:72744594..72744609,-!p1@FOXD1!0.66!18.69!FOXD1;;chr3:12329358..12329393,+!p3@PPARG!0.66!9.76!PPARG;;chr5:150284532..150284549,-!p1@ZNF300!0.66!8.08!ZNF300;;chr1:170632959..170632987,+!p4@PRRX1!0.66!4.04!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.66!3.54!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.66!3.54!PRRX1;;chr1:75600067..75600094,+!p2@LHX8!0.66!3.54!LHX8;;chr2:96012397..96012417,+!p3@KCNIP3!0.66!3.54!KCNIP3;;chr12:66357214..66357233,+!p13@HMGA2!0.66!3.54!HMGA2;;chr8:25902876..25902936,-!p1@EBF2!0.66!3.54!EBF2;;chr6:34204672..34204692,+!p1@HMGA1!0.65!461.41!HMGA1;;chr4:26322419..26322479,+!p2@RBPJ!0.65!48.99!RBPJ;;chr5:134369905..134369972,-!p1@PITX1!0.65!5.72!PITX1;;chr20:42295713..42295738,+!p2@MYBL2!0.64!23.23!MYBL2;;chr3:12329397..12329433,+!p2@PPARG!0.64!8.59!PPARG;;chrX:66763815..66763854,+!p2@AR!0.64!4.71!AR;;chr5:134369879..134369898,-!p2@PITX1!0.64!3.37!PITX1;;chr12:115122262..115122271,-!p7@TBX3!0.64!3.37!TBX3;;chr18:52989031..52989079,-!p2@TCF4!0.63!8.59!TCF4;;chr2:200323414..200323455,-!p1@SATB2!0.63!7.74!SATB2;;chr8:60031762..60031803,-!p3@TOX!0.63!5.05!TOX;;chr12:2986275..2986363,-!p1@FOXM1!0.62!38.04!FOXM1;;chr20:42543506..42543549,+!p2@TOX2!0.62!8.59!TOX2;;chr4:26322373..26322393,+!p4@RBPJ!0.62!5.05!RBPJ;;chr12:66218443..66218461,+!p8@HMGA2!0.62!4.21!HMGA2;;chr12:66218003..66218018,+!p9@HMGA2!0.61!3.87!HMGA2;;chr14:37126814..37126834,+!p4@PAX9!0.61!3.03!PAX9;;chr4:26323764..26323821,+!p15@RBPJ!0.61!3.03!RBPJ;;chr17:17726907..17726958,-!p2@SREBF1!0.60!22.05!SREBF1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.60!15.99!TAL1;;chr6:85474299..85474324,-!p1@TBX18!0.60!5.89!TBX18;;chr19:22817119..22817145,+!p1@ZNF492!0.60!5.39!ZNF492;;chr6:10412392..10412409,-!p4@TFAP2A!0.60!3.54!TFAP2A;;chr1:170633245..170633256,+!p14@PRRX1!0.59!2.86!PRRX1;;chr6:31126291..31126399,+!p1@TCF19!0.57!32.15!TCF19;;chr12:2986206..2986258,-!p2@FOXM1!0.57!19.86!FOXM1;;chr12:115122005..115122016,-!p3@TBX3!0.57!3.37!TBX3;;chr16:86600870..86600921,+!p2@FOXC2!0.57!2.69!FOXC2;;chr3:157824001..157824078,-!p2@SHOX2!0.57!2.69!SHOX2;;chr8:67525473..67525518,-!p1@MYBL1!0.56!6.90!MYBL1;;chr19:13134457..13134462,+!p5@NFIX!0.56!5.22!NFIX;;chr2:166326200..166326216,+!p1@CSRNP3!0.56!4.21!CSRNP3;;chr5:43067636..43067674,+!p6@ZNF131!0.55!3.70!ZNF131;;chr19:38720294..38720348,-!p1@DPF1!0.55!3.37!DPF1;;chr3:12330560..12330579,+!p1@PPARG!0.55!3.03!PPARG;;chr8:116673894..116673913,-!p12@TRPS1!0.55!2.53!TRPS1;;chr11:65686952..65686975,+!p5@DRAP1!0.54!16.83!DRAP1;;chr6:28411241..28411284,-!p1@ZSCAN23!0.54!9.26!ZSCAN23;;chr5:124082322..124082364,-!p1@ZNF608!0.54!7.41!ZNF608;;chr12:53614155..53614187,-!p3@RARG!0.54!5.56!RARG;;chr5:72744445..72744466,-!p2@FOXD1!0.54!4.55!FOXD1;;chr17:41622925..41622976,-!p3@ETV4!0.54!4.04!ETV4;;chr12:53614115..53614154,-!p1@RARG!0.53!15.82!RARG;;chr1:247171347..247171366,-!p2@ZNF695!0.53!5.05!ZNF695;;chr4:206390..206444,+!p1@ZNF876P!0.53!4.88!ZNF876P;;chr6:1312325..1312340,+!p1@FOXQ1!0.53!4.38!FOXQ1;;chr4:57522166..57522260,-!p2@HOPX!0.53!2.86!HOPX;;chr2:45236579..45236596,-!p2@SIX2!0.53!2.36!SIX2;;chr2:96012353..96012378,+!p4@KCNIP3!0.53!2.36!KCNIP3;;chr4:26322673..26322684,+!p11@RBPJ!0.53!2.36!RBPJ;;chr8:93115584..93115642,-!p5@RUNX1T1!0.53!2.36!RUNX1T1;;chr1:170632028..170632043,+!p20@PRRX1!0.53!2.36!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.53!2.36!PRRX1;;chr12:66218904..66218913,+!p11@HMGA2!0.53!2.36!HMGA2;;chr20:42295745..42295765,+!p1@MYBL2!0.52!49.15!MYBL2;;chr9:16870710..16870763,-!p1@BNC2!0.52!4.55!BNC2;;chr9:16870659..16870675,-!p2@BNC2!0.52!3.03!BNC2;;chr4:26322616..26322652,+!p1@RBPJ!0.51!63.29!RBPJ;;chr19:24097675..24097699,+!p1@ZNF726!0.51!9.26!ZNF726;;chr19:20188776..20188826,+!p1@ZNF90!0.51!7.24!ZNF90;;chr1:247171316..247171336,-!p3@ZNF695!0.51!3.70!ZNF695;;chr7:44143925..44143970,+!p1@AEBP1!0.50!63.46!AEBP1;;chr5:138609782..138609826,+!p5@MATR3!0.50!18.01!MATR3;;chr17:56065729..56065781,-!p2@VEZF1!0.50!11.95!VEZF1;;chr2:121493425..121493474,+!p1@GLI2!0.50!5.72!GLI2;;chr17:7492684..7492778,-!p2@SOX15!0.50!5.39!SOX15;;chr17:41622982..41623001,-!p11@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 +
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002556;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137
 +
|ffid_belonging_in_development=CL:0000134
 
|fonse_cell_line=
 
|fonse_cell_line=
 
|fonse_cell_line_closure=
 
|fonse_cell_line_closure=
Line 34: Line 44:
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 
|has_quality=
 
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor1.CNhs10867.11238-116D5.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor1.CNhs10867.11238-116D5.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor1.CNhs10867.11238-116D5.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor1.CNhs10867.11238-116D5.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor1.CNhs10867.11238-116D5.hg38.nobarcode.ctss.bed.gz
 
|id=FF:11238-116D5
 
|id=FF:11238-116D5
|is_a=EFO:0002091;;FF:0000002;;FF:0000067;;FF:0000210
+
|is_a=EFO:0002091;;FF:0000067
 +
|is_obsolete=
 +
|library_id=CNhs10867
 +
|library_id_phase_based=2:CNhs10867
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11238
 +
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.ACAGTG.11238
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11238
 +
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.ACAGTG.11238
 
|name=Fibroblast - Periodontal Ligament, donor1
 
|name=Fibroblast - Periodontal Ligament, donor1
 
|namespace=FANTOM5
 
|namespace=FANTOM5
Line 41: Line 65:
 
|profile_cagescan=,,,
 
|profile_cagescan=,,,
 
|profile_hcage=CNhs10867,LSID702,release008,COMPLETED
 
|profile_hcage=CNhs10867,LSID702,release008,COMPLETED
|profile_rnaseq=,,,
+
|profile_rnaseq=
 
|profile_srnaseq=SRhi10007,,,
 
|profile_srnaseq=SRhi10007,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 +
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.092750228888418,0,-0.148808373414207,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0272980855565437,0,0,0.033783900598984,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0571302634081644,0,0,0,0,0,0,0,0,0.00956887948614965,0,0,0,0.547164260055486,0,0,0,-0.0969923612426051,0,0,0.240784590574431,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.033783900598984,0,0,0.0307839168403816,0,0,-0.0470644220342874,0.063012462395942,0,0,-0.147554356463588,-0.177413502096885,0,0.067567801197968,0,0.067567801197968,0.0279895735541775,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0154190806418834,0,0,0,-0.107645861978707,-0.292818609799514,0,0,-0.00979148127889537,0,0,0
 +
|repeat_enrich_byname=0,0,0,0,0.0279895735541775,0.067567801197968,0.067567801197968,0.067567801197968,0,0.067567801197968,0.126024924791884,0,0,0.067567801197968,0,0,-0.0235935261568757,0,0.131224221139311,-0.143515142523472,0.033783900598984,0,0.29112546781397,0,0,0,0,0,0,0,0,0,0.439303870204518,0,-0.0504125515893149,0,0,0,0,0.0151586195151334,-0.0402579246988879,0,0.0400815018646247,-0.0683442610773682,0,0,0,0,0.0203235017378455,0,-0.0533116825957726,-0.0827201683234173,-0.221611588102807,0.103095786466804,-0.055712496781182,0,0,0,0.0367230033358187,-0.000226937897709778,0,0,-0.058767389355932,0.0400269880969491,0,0,0.325659986225688,0,-0.0847933081418891,0.394993689212175,0,0.0271548981577042,0,0,0,0,0,0.067567801197968,0,0,0,0,0,-0.0574934668214365,-0.200963671887085,0,0,0.067567801197968,0,-0.118519073108361,0,0,0.658667141688707,0.0470715263022863,0.081132675380007,-0.301112798408343,0,-0.234821925811945,-0.0457535553619529,-0.476495710055002,-0.147554356463588,0.117812456828381,0.075232586649672,0,-0.0507812232541136,0.308787027267598,-0.0136741384484676,-0.0669749786057101,0.0232892346947859,0.137597633665077,-0.0215680583052058,0,0,0.0644609554635137,0.103898464256716,0,0.067567801197968,-0.0350112971243173,0.062556332152083,-0.138661586236359,-0.212543953926861,0.0976919061287715,0.160273341915766,0.234464685725784,0.0461321905791955,0,0.334117134359598,0.0215657880662871,0.265214306199519,-0.0421385517672741,-0.0482333260180174,-0.259998854604846,-0.135814431804698,0,-0.113521940561769,-0.0683442610773682,0,0.127353496328149,0.0445586123917425,0,0,0.190729131267381,0,0,0,0.00266980723667476,0,0.113534467425409,-0.274277836830647,-0.165287760357577,0,-0.14435370666279,0.103297586146592,0.0391530401920573,0,-0.14150838647524,0.119204408742125,0.067567801197968,-0.0690484554675472,0,0.0428543127891631,-0.0565062970171228,0.0400037261689161,-0.354827004193769,0.0675780979800587,-0.125161493884411,-0.0359692441241758,-0.0846757063029031,-0.0584209125171151,0,1.59127780131335,0,0.120352878588677,-0.376298469415277,-0.0435228879353911,0.119347162557778,0,-0.0036720918095261,0,-0.0556634619139307,0,0.0532743353044206,0.229072610665553,-0.101161156793159,0.127929816181474,0,-0.127885110314733,-0.610592030658277,0.0276237859104327,-0.0096982190548981,0.0296061413508149,0,0.506215800037172,0.08406539623864,-0.211650427864589,0.289689669349074,0,0.134549989632415,0,0,0.00535864612471115,-0.109451112972505,0,0.122073284667324,0.0932333727094893,0.0188663410431619,0.0615678336807631,0,0,-0.00554476606173426,0,0.177538907115697,-0.382342714689342,0.177538907115697,-0.0726190639031477,0.434356924781711,0,0.10598948404481,0,0,-0.109959964767208,0,0.057108949533008,0,0,0.023700833428919,0.18020248648807,0,0,0.126024924791884,0.0722829669578665,0,0,0,0,0,0,0,-0.0110528882685927,-0.0516336680102009,0.177538907115697,-0.00670110922116096,0,0.067567801197968,0,0,0,0.0278330442412427,0,0.067567801197968,0.0793580271343237,-0.0062087008883358,0.0545214914392769,0,0,0,0,0.0874762596527724,-0.0256976549790266,0.177538907115697,0.171336955708615,0,0,0,0,0.0398839350026726,0,0,0.033783900598984,0.033783900598984,-0.057730457053664,-0.0997499267733779,0,0,0,-0.27695440160179,0,0,0,0.00113070182941355,0.101271229318915,0,0,-0.0782696063654131,0,-0.134999851836155,-0.0815818795468414,0.00088850241873424,0.144953461500719,0.0382931277891059,-0.722840241088196,0,0.067567801197968,-0.261347131789888,0,0.033783900598984,0.0983988366493715,0,0,0.0156522899851418,0,0,0,0,0,0,0.473368753868711,0,0,0,0,0,0,0,0.067567801197968,0,0,0,-0.15514890106328,-0.0246562554605424,0.067567801197968,0,0,0,0,0,0,0.0434617781190649,-0.0856466659980259,0,0,0,0,0,0,0,0,-0.0708836288318949,0,0,0,0,0,-0.0969923612426051,0,0.067567801197968,0,0,-0.564807121153884,0,0,-0.0998232250778169,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100266263093241,-0.416621659271342,0,0.067567801197968,0,0,0,0,0,-0.148808373414207,0,0,0,0,-0.113884373708977,0,0,0,0.3503070325633,0,-0.092750228888418,0,0,0,0,0,0.067567801197968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439892172964396,0,0.0509207018146179,9.06504152812793e-05,0,0,0.225294478939666,0,0,0,0,0,0,0.101266729071233,0.0176229211527617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063012462395942,0.0338107367438059,0,0,0,0,0.067567801197968,0,0,-0.0979578962680575,0,0.033783900598984,-0.0582489092015422,0,0,0,0,0,0,-0.010624815246633,0.0288434301568706,0.0190525759876899,0,0,0,0.042410790512471,0.547164260055486,0,0,0,0.271350830368626,0.067567801197968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0272980855565437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.033783900598984,0,0,0,0,0,0,0.054758090282432,0,0,0,0,0,0,0,0.067567801197968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0124506670706704,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067567801197968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.227889959834697,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,0.0416482925618568,0,0,0,0,0,0,0,0,0,0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|rna_box=116
 
|rna_box=116
 
|rna_catalog_number=SC2635
 
|rna_catalog_number=SC2635
Line 55: Line 82:
 
|rna_tube_id=116D5
 
|rna_tube_id=116D5
 
|rna_weight_ug=10
 
|rna_weight_ug=10
 +
|rnaseq_library_id=SRhi10007.ACAGTG
 
|sample_age=fetal
 
|sample_age=fetal
 +
|sample_category=primary cells
 
|sample_cell_catalog=N/A
 
|sample_cell_catalog=N/A
 
|sample_cell_line=
 
|sample_cell_line=
Line 68: Line 97:
 
|sample_ethnicity=unknown
 
|sample_ethnicity=unknown
 
|sample_experimental_condition=
 
|sample_experimental_condition=
 +
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.1957115074863e-281!GO:0043226;organelle;2.40307452357003e-224!GO:0043229;intracellular organelle;4.39675973913698e-224!GO:0043231;intracellular membrane-bound organelle;2.61316889560055e-222!GO:0043227;membrane-bound organelle;6.9941046900353e-222!GO:0005737;cytoplasm;2.63073130692905e-192!GO:0044422;organelle part;4.30227854144774e-169!GO:0044446;intracellular organelle part;1.20455812171844e-167!GO:0044444;cytoplasmic part;9.29786917594611e-133!GO:0032991;macromolecular complex;6.14617780801991e-115!GO:0005634;nucleus;7.33669604964819e-103!GO:0044237;cellular metabolic process;3.03904080408299e-101!GO:0030529;ribonucleoprotein complex;7.01086828979111e-101!GO:0044238;primary metabolic process;1.16430852887928e-100!GO:0043170;macromolecule metabolic process;1.75458275151127e-92!GO:0044428;nuclear part;1.88242195809428e-87!GO:0043233;organelle lumen;2.28563436751776e-82!GO:0031974;membrane-enclosed lumen;2.28563436751776e-82!GO:0003723;RNA binding;7.33691847940203e-81!GO:0005739;mitochondrion;2.3809728046062e-73!GO:0005515;protein binding;8.83276309664391e-71!GO:0005840;ribosome;6.00137233753307e-60!GO:0043234;protein complex;4.10774121308162e-57!GO:0006396;RNA processing;6.1818080233458e-57!GO:0016043;cellular component organization and biogenesis;2.95770892901066e-56!GO:0043283;biopolymer metabolic process;5.24405573060094e-56!GO:0006412;translation;1.56966822182798e-53!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.61104693532352e-53!GO:0003735;structural constituent of ribosome;8.41761603736626e-52!GO:0031090;organelle membrane;4.28232007504128e-50!GO:0044429;mitochondrial part;7.64456276388335e-50!GO:0010467;gene expression;8.3487050148096e-50!GO:0031981;nuclear lumen;2.54692722222033e-49!GO:0043228;non-membrane-bound organelle;3.81781849096762e-47!GO:0043232;intracellular non-membrane-bound organelle;3.81781849096762e-47!GO:0019538;protein metabolic process;3.67678455160874e-46!GO:0031967;organelle envelope;8.06200635671648e-46!GO:0031975;envelope;1.63572405396151e-45!GO:0033279;ribosomal subunit;1.32275441601438e-44!GO:0009058;biosynthetic process;1.95901987199225e-44!GO:0016071;mRNA metabolic process;2.53352615096778e-44!GO:0015031;protein transport;2.79571529038433e-44!GO:0033036;macromolecule localization;4.62363443785906e-44!GO:0006259;DNA metabolic process;7.05981812151269e-43!GO:0008380;RNA splicing;6.83532796536633e-42!GO:0044249;cellular biosynthetic process;1.04006973343701e-41!GO:0005829;cytosol;2.72189798101753e-41!GO:0044260;cellular macromolecule metabolic process;4.42739067889303e-41!GO:0006996;organelle organization and biogenesis;6.81924090298131e-41!GO:0044267;cellular protein metabolic process;1.26885083438772e-40!GO:0045184;establishment of protein localization;2.09455176881592e-40!GO:0008104;protein localization;3.37289101442782e-40!GO:0009059;macromolecule biosynthetic process;4.39522358519411e-40!GO:0006397;mRNA processing;2.46975831880352e-39!GO:0065003;macromolecular complex assembly;1.08423726968844e-36!GO:0007049;cell cycle;3.26415792293948e-35!GO:0046907;intracellular transport;6.1316670217763e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.51484585073469e-35!GO:0003676;nucleic acid binding;8.57420710186787e-34!GO:0022607;cellular component assembly;1.28735469316624e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.39060651115804e-32!GO:0005740;mitochondrial envelope;3.73276986759014e-31!GO:0005654;nucleoplasm;1.05947746516416e-30!GO:0005681;spliceosome;5.13815415634475e-30!GO:0000166;nucleotide binding;4.54170801576688e-29!GO:0031966;mitochondrial membrane;4.75943700970848e-29!GO:0019866;organelle inner membrane;6.02434749158742e-29!GO:0006886;intracellular protein transport;6.75158533129996e-29!GO:0000278;mitotic cell cycle;5.00730308971243e-28!GO:0005694;chromosome;8.84694083021337e-28!GO:0022402;cell cycle process;1.53482417433218e-27!GO:0005743;mitochondrial inner membrane;1.1242398765519e-26!GO:0006974;response to DNA damage stimulus;1.84038961579528e-25!GO:0044445;cytosolic part;3.96901425428695e-25!GO:0044427;chromosomal part;8.58003834011956e-25!GO:0044451;nucleoplasm part;4.01255612640325e-24!GO:0016462;pyrophosphatase activity;1.75292467799501e-23!GO:0000087;M phase of mitotic cell cycle;1.75292467799501e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.39298800405426e-23!GO:0015935;small ribosomal subunit;3.54893266917278e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;3.67626410081812e-23!GO:0007067;mitosis;4.36674478000272e-23!GO:0022403;cell cycle phase;5.17772768829353e-23!GO:0051649;establishment of cellular localization;7.37473448051594e-23!GO:0051641;cellular localization;8.72033813810975e-23!GO:0017111;nucleoside-triphosphatase activity;1.17677465908129e-22!GO:0015934;large ribosomal subunit;1.47265899121615e-22!GO:0031980;mitochondrial lumen;1.55398664505958e-22!GO:0005759;mitochondrial matrix;1.55398664505958e-22!GO:0016070;RNA metabolic process;2.50328990883161e-22!GO:0006119;oxidative phosphorylation;3.30514207354638e-22!GO:0006281;DNA repair;4.76501954696005e-22!GO:0051301;cell division;1.74654929939409e-21!GO:0044455;mitochondrial membrane part;5.73311385407584e-21!GO:0006457;protein folding;6.79541012849362e-21!GO:0012505;endomembrane system;8.65572870394897e-21!GO:0017076;purine nucleotide binding;2.30323771090484e-20!GO:0000279;M phase;3.02278765008863e-20!GO:0022618;protein-RNA complex assembly;4.15695376878461e-20!GO:0016874;ligase activity;4.74286566844802e-20!GO:0032553;ribonucleotide binding;4.97541238089588e-20!GO:0032555;purine ribonucleotide binding;4.97541238089588e-20!GO:0005730;nucleolus;2.68444393970082e-19!GO:0051276;chromosome organization and biogenesis;3.08828028967906e-19!GO:0048770;pigment granule;1.54290107635619e-18!GO:0042470;melanosome;1.54290107635619e-18!GO:0006512;ubiquitin cycle;2.92439610629173e-18!GO:0009719;response to endogenous stimulus;3.11063616753599e-18!GO:0005746;mitochondrial respiratory chain;1.50594327852104e-17!GO:0005761;mitochondrial ribosome;1.8069597001664e-17!GO:0000313;organellar ribosome;1.8069597001664e-17!GO:0005524;ATP binding;1.82326564685947e-17!GO:0006260;DNA replication;1.83392224705875e-17!GO:0030554;adenyl nucleotide binding;3.36292186051076e-17!GO:0032559;adenyl ribonucleotide binding;5.01629971751771e-17!GO:0008135;translation factor activity, nucleic acid binding;5.78553070289425e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.78553070289425e-17!GO:0005783;endoplasmic reticulum;5.7909401623256e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.93373057432367e-17!GO:0044265;cellular macromolecule catabolic process;6.95162252981901e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;8.8512422633196e-17!GO:0019941;modification-dependent protein catabolic process;1.44486057241123e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.44486057241123e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.60531187073829e-16!GO:0051186;cofactor metabolic process;2.26083479913467e-16!GO:0044257;cellular protein catabolic process;2.78099979091897e-16!GO:0000502;proteasome complex (sensu Eukaryota);2.97800367388498e-16!GO:0043285;biopolymer catabolic process;3.95709799143015e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.31812933313694e-15!GO:0042254;ribosome biogenesis and assembly;1.72835687724532e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.93653372857357e-15!GO:0003954;NADH dehydrogenase activity;1.93653372857357e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.93653372857357e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;2.09199864211185e-15!GO:0000375;RNA splicing, via transesterification reactions;2.09199864211185e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.09199864211185e-15!GO:0005635;nuclear envelope;2.24407562588592e-15!GO:0009057;macromolecule catabolic process;5.42393809640154e-15!GO:0044453;nuclear membrane part;7.40925277165505e-15!GO:0044432;endoplasmic reticulum part;9.46494967578676e-15!GO:0031965;nuclear membrane;1.41772608337574e-14!GO:0030163;protein catabolic process;1.83910131007355e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;1.99761949016976e-14!GO:0008134;transcription factor binding;2.439701881013e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.85581616288424e-14!GO:0006605;protein targeting;3.8753587220243e-14!GO:0044248;cellular catabolic process;4.03404007006146e-14!GO:0048193;Golgi vesicle transport;5.68506789426046e-14!GO:0042775;organelle ATP synthesis coupled electron transport;7.83440888916226e-14!GO:0042773;ATP synthesis coupled electron transport;7.83440888916226e-14!GO:0006323;DNA packaging;7.85774424368874e-14!GO:0005794;Golgi apparatus;1.41715965145263e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.44367917462924e-13!GO:0045271;respiratory chain complex I;1.44367917462924e-13!GO:0005747;mitochondrial respiratory chain complex I;1.44367917462924e-13!GO:0003743;translation initiation factor activity;2.32540231164397e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.02971675180439e-13!GO:0051082;unfolded protein binding;5.92065553012927e-13!GO:0016604;nuclear body;6.87540816798215e-13!GO:0000785;chromatin;9.09764755453888e-13!GO:0006413;translational initiation;9.11836522620401e-13!GO:0006732;coenzyme metabolic process;9.19535967969414e-13!GO:0065004;protein-DNA complex assembly;1.78125260955206e-12!GO:0051726;regulation of cell cycle;1.81856605294589e-12!GO:0016887;ATPase activity;1.84067397624278e-12!GO:0042623;ATPase activity, coupled;2.04369196609879e-12!GO:0000074;regulation of progression through cell cycle;2.31805114191008e-12!GO:0006333;chromatin assembly or disassembly;2.53638340930781e-12!GO:0004386;helicase activity;2.76108001040234e-12!GO:0005643;nuclear pore;3.8840293457177e-12!GO:0016192;vesicle-mediated transport;4.80895250684033e-12!GO:0009055;electron carrier activity;6.44554608039813e-12!GO:0043412;biopolymer modification;7.15124379005918e-12!GO:0006399;tRNA metabolic process;7.21719258851681e-12!GO:0015630;microtubule cytoskeleton;8.22923714748054e-12!GO:0005793;ER-Golgi intermediate compartment;1.97185917726331e-11!GO:0009259;ribonucleotide metabolic process;2.9108438643712e-11!GO:0000775;chromosome, pericentric region;4.83680265669957e-11!GO:0065002;intracellular protein transport across a membrane;5.92577050789187e-11!GO:0006446;regulation of translational initiation;8.78490707680783e-11!GO:0050657;nucleic acid transport;9.44606686056867e-11!GO:0051236;establishment of RNA localization;9.44606686056867e-11!GO:0050658;RNA transport;9.44606686056867e-11!GO:0006163;purine nucleotide metabolic process;1.09278683397567e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.12715063298914e-10!GO:0006403;RNA localization;1.2343202849162e-10!GO:0006334;nucleosome assembly;1.48494772850339e-10!GO:0006913;nucleocytoplasmic transport;2.15555926525693e-10!GO:0006364;rRNA processing;2.20405490039401e-10!GO:0008026;ATP-dependent helicase activity;2.3406860075827e-10!GO:0005789;endoplasmic reticulum membrane;3.29326496678124e-10!GO:0046930;pore complex;3.30952974594559e-10!GO:0006464;protein modification process;3.4787299900001e-10!GO:0008565;protein transporter activity;4.1744359762127e-10!GO:0009150;purine ribonucleotide metabolic process;4.51826946461568e-10!GO:0016607;nuclear speck;4.92058701964641e-10!GO:0051169;nuclear transport;5.0494942166594e-10!GO:0008639;small protein conjugating enzyme activity;5.43033058427301e-10!GO:0005819;spindle;6.94306465925483e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.99682464538443e-10!GO:0016072;rRNA metabolic process;7.17025201498848e-10!GO:0009260;ribonucleotide biosynthetic process;8.97884337964126e-10!GO:0031497;chromatin assembly;9.1634060924748e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.0076542141031e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.0076542141031e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.0076542141031e-09!GO:0004842;ubiquitin-protein ligase activity;1.0232492053203e-09!GO:0009060;aerobic respiration;1.04654328788474e-09!GO:0006164;purine nucleotide biosynthetic process;1.05800366721742e-09!GO:0003712;transcription cofactor activity;1.18093275229402e-09!GO:0043038;amino acid activation;1.36781404201044e-09!GO:0006418;tRNA aminoacylation for protein translation;1.36781404201044e-09!GO:0043039;tRNA aminoacylation;1.36781404201044e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.67921506306771e-09!GO:0019787;small conjugating protein ligase activity;2.59857463539919e-09!GO:0006461;protein complex assembly;3.45445363006532e-09!GO:0045333;cellular respiration;3.99324309339414e-09!GO:0009152;purine ribonucleotide biosynthetic process;4.42135298135278e-09!GO:0043566;structure-specific DNA binding;4.54034654243684e-09!GO:0003697;single-stranded DNA binding;4.58219777441766e-09!GO:0030532;small nuclear ribonucleoprotein complex;4.78475513729865e-09!GO:0009199;ribonucleoside triphosphate metabolic process;5.06300807313187e-09!GO:0009141;nucleoside triphosphate metabolic process;6.35486310084232e-09!GO:0043687;post-translational protein modification;7.25612462082453e-09!GO:0006888;ER to Golgi vesicle-mediated transport;7.49849045978492e-09!GO:0051028;mRNA transport;8.31235690419585e-09!GO:0050794;regulation of cellular process;9.58795631606259e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.88476831212177e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.14269678124288e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.16197565230445e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.16197565230445e-08!GO:0005813;centrosome;1.46978736715383e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.66664872405478e-08!GO:0016881;acid-amino acid ligase activity;2.04236876080097e-08!GO:0016779;nucleotidyltransferase activity;2.53490989124923e-08!GO:0006366;transcription from RNA polymerase II promoter;2.81832995500438e-08!GO:0006099;tricarboxylic acid cycle;2.95003683971017e-08!GO:0046356;acetyl-CoA catabolic process;2.95003683971017e-08!GO:0009056;catabolic process;3.34948577626389e-08!GO:0005815;microtubule organizing center;4.00411572733989e-08!GO:0051188;cofactor biosynthetic process;4.21548192154604e-08!GO:0006261;DNA-dependent DNA replication;5.82559323743584e-08!GO:0007051;spindle organization and biogenesis;6.83067760111707e-08!GO:0009142;nucleoside triphosphate biosynthetic process;7.27409244744059e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.27409244744059e-08!GO:0030120;vesicle coat;8.03379155983043e-08!GO:0030662;coated vesicle membrane;8.03379155983043e-08!GO:0015986;ATP synthesis coupled proton transport;8.21545065945504e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.21545065945504e-08!GO:0012501;programmed cell death;8.36942129507839e-08!GO:0017038;protein import;8.47073088506584e-08!GO:0006084;acetyl-CoA metabolic process;9.16107180675872e-08!GO:0016740;transferase activity;9.76482289713056e-08!GO:0046034;ATP metabolic process;9.98885131080433e-08!GO:0009109;coenzyme catabolic process;9.99644236389841e-08!GO:0006915;apoptosis;1.29266450644271e-07!GO:0003924;GTPase activity;1.42220676741037e-07!GO:0048475;coated membrane;1.45507644796634e-07!GO:0030117;membrane coat;1.45507644796634e-07!GO:0019829;cation-transporting ATPase activity;1.53293766790584e-07!GO:0051187;cofactor catabolic process;1.5543093132001e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.65611205848831e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.65611205848831e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.69889239387908e-07!GO:0051329;interphase of mitotic cell cycle;1.73881970380306e-07!GO:0007005;mitochondrion organization and biogenesis;2.79477066506368e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.88396642582675e-07!GO:0016568;chromatin modification;3.16327472138858e-07!GO:0009117;nucleotide metabolic process;3.16327472138858e-07!GO:0008094;DNA-dependent ATPase activity;3.535005391835e-07!GO:0005657;replication fork;3.64081843447356e-07!GO:0016491;oxidoreductase activity;4.54911789666353e-07!GO:0032446;protein modification by small protein conjugation;4.86681349026345e-07!GO:0000151;ubiquitin ligase complex;5.93450974918829e-07!GO:0000245;spliceosome assembly;6.09776560296277e-07!GO:0051325;interphase;6.98018672559827e-07!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;7.26618841347492e-07!GO:0005667;transcription factor complex;7.57422184296691e-07!GO:0000075;cell cycle checkpoint;7.74164915812154e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.30784330088565e-07!GO:0016567;protein ubiquitination;8.91077901124518e-07!GO:0048523;negative regulation of cellular process;9.15762774206724e-07!GO:0044431;Golgi apparatus part;1.05673592197529e-06!GO:0008219;cell death;1.06387500306697e-06!GO:0016265;death;1.06387500306697e-06!GO:0005788;endoplasmic reticulum lumen;1.1818290268231e-06!GO:0016859;cis-trans isomerase activity;1.30637427650914e-06!GO:0006754;ATP biosynthetic process;1.33868559645599e-06!GO:0006753;nucleoside phosphate metabolic process;1.33868559645599e-06!GO:0045259;proton-transporting ATP synthase complex;1.76063883577473e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.87708813768862e-06!GO:0009108;coenzyme biosynthetic process;2.06737038403052e-06!GO:0005762;mitochondrial large ribosomal subunit;2.10721805714459e-06!GO:0000315;organellar large ribosomal subunit;2.10721805714459e-06!GO:0051246;regulation of protein metabolic process;2.49743889396462e-06!GO:0016853;isomerase activity;2.90222261785773e-06!GO:0005768;endosome;3.02134536632172e-06!GO:0031324;negative regulation of cellular metabolic process;3.5294642894048e-06!GO:0003713;transcription coactivator activity;3.68244946996675e-06!GO:0005839;proteasome core complex (sensu Eukaryota);3.68244946996675e-06!GO:0006613;cotranslational protein targeting to membrane;3.78385131114102e-06!GO:0003724;RNA helicase activity;3.93650262035041e-06!GO:0006752;group transfer coenzyme metabolic process;4.56598008758711e-06!GO:0003899;DNA-directed RNA polymerase activity;5.26320402747801e-06!GO:0000776;kinetochore;6.10445237373423e-06!GO:0007059;chromosome segregation;6.19640603589631e-06!GO:0005525;GTP binding;6.461620078357e-06!GO:0008654;phospholipid biosynthetic process;6.47490383076793e-06!GO:0000786;nucleosome;8.31131919629656e-06!GO:0016563;transcription activator activity;1.05266415665929e-05!GO:0050789;regulation of biological process;1.16540043765147e-05!GO:0006302;double-strand break repair;1.23505449033185e-05!GO:0005798;Golgi-associated vesicle;1.23555907743222e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.28836103163712e-05!GO:0016126;sterol biosynthetic process;1.29603698482853e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.32957964624945e-05!GO:0007010;cytoskeleton organization and biogenesis;1.48731720023312e-05!GO:0006091;generation of precursor metabolites and energy;1.49881605589361e-05!GO:0043623;cellular protein complex assembly;1.59226226828756e-05!GO:0000314;organellar small ribosomal subunit;1.65979594013782e-05!GO:0005763;mitochondrial small ribosomal subunit;1.65979594013782e-05!GO:0004298;threonine endopeptidase activity;1.78844349467289e-05!GO:0051170;nuclear import;1.79456843580675e-05!GO:0031252;leading edge;1.79870886644287e-05!GO:0019222;regulation of metabolic process;1.8958503665246e-05!GO:0044440;endosomal part;2.06736714046603e-05!GO:0010008;endosome membrane;2.06736714046603e-05!GO:0043021;ribonucleoprotein binding;2.09695594409303e-05!GO:0019843;rRNA binding;2.1664533512179e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.37125781957657e-05!GO:0048519;negative regulation of biological process;2.47554226198193e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.49154173857881e-05!GO:0009892;negative regulation of metabolic process;2.71431259373429e-05!GO:0006310;DNA recombination;2.82904154767725e-05!GO:0045454;cell redox homeostasis;2.83600297089821e-05!GO:0000139;Golgi membrane;3.11527397462794e-05!GO:0006606;protein import into nucleus;3.83859293912669e-05!GO:0032561;guanyl ribonucleotide binding;3.84604211235994e-05!GO:0019001;guanyl nucleotide binding;3.84604211235994e-05!GO:0045786;negative regulation of progression through cell cycle;3.97793232002209e-05!GO:0016787;hydrolase activity;4.31702662051175e-05!GO:0016023;cytoplasmic membrane-bound vesicle;4.47933790550722e-05!GO:0031988;membrane-bound vesicle;4.64144738024703e-05!GO:0051427;hormone receptor binding;5.56047347914073e-05!GO:0006793;phosphorus metabolic process;6.26154803507608e-05!GO:0006796;phosphate metabolic process;6.26154803507608e-05!GO:0006916;anti-apoptosis;6.27142178152062e-05!GO:0030867;rough endoplasmic reticulum membrane;6.31210529500677e-05!GO:0003684;damaged DNA binding;7.14529205414795e-05!GO:0003682;chromatin binding;8.04627178455291e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;8.21049266250276e-05!GO:0031968;organelle outer membrane;8.6479771466804e-05!GO:0006695;cholesterol biosynthetic process;9.14130601534935e-05!GO:0016481;negative regulation of transcription;9.38667933112659e-05!GO:0019867;outer membrane;0.000103715572993397!GO:0016564;transcription repressor activity;0.000116365290695535!GO:0008186;RNA-dependent ATPase activity;0.000117893357525182!GO:0035257;nuclear hormone receptor binding;0.000120213701228559!GO:0051168;nuclear export;0.000130148193071085!GO:0016310;phosphorylation;0.000140136952937158!GO:0016363;nuclear matrix;0.000151530125371211!GO:0005770;late endosome;0.000154722178671983!GO:0005905;coated pit;0.000158066988019036!GO:0007088;regulation of mitosis;0.000164694854265068!GO:0031982;vesicle;0.000177408544050006!GO:0007052;mitotic spindle organization and biogenesis;0.000185072823531886!GO:0031410;cytoplasmic vesicle;0.00018799570957341!GO:0005769;early endosome;0.000189167483805519!GO:0005874;microtubule;0.000189167483805519!GO:0051252;regulation of RNA metabolic process;0.000205030214316866!GO:0000059;protein import into nucleus, docking;0.000219977266654814!GO:0003690;double-stranded DNA binding;0.000220330372760052!GO:0042981;regulation of apoptosis;0.000222421649579899!GO:0019899;enzyme binding;0.000228931274710528!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000231559445966997!GO:0006612;protein targeting to membrane;0.000241783699154621!GO:0008610;lipid biosynthetic process;0.000256686314532297!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000261948017510206!GO:0007093;mitotic cell cycle checkpoint;0.000265285720304155!GO:0003678;DNA helicase activity;0.000266083115643059!GO:0008168;methyltransferase activity;0.000270043345100933!GO:0043067;regulation of programmed cell death;0.000270043345100933!GO:0006626;protein targeting to mitochondrion;0.000271019580640866!GO:0016741;transferase activity, transferring one-carbon groups;0.000275250551090564!GO:0005885;Arp2/3 protein complex;0.000290926607769023!GO:0046474;glycerophospholipid biosynthetic process;0.000294416683326175!GO:0000228;nuclear chromosome;0.00029550170762018!GO:0043681;protein import into mitochondrion;0.000301868031554751!GO:0006383;transcription from RNA polymerase III promoter;0.000323825961768885!GO:0043069;negative regulation of programmed cell death;0.000344419883526177!GO:0030133;transport vesicle;0.000346632657583652!GO:0004004;ATP-dependent RNA helicase activity;0.000346915456489445!GO:0005048;signal sequence binding;0.00034957221891803!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000350743525613955!GO:0051052;regulation of DNA metabolic process;0.000354943266908079!GO:0005741;mitochondrial outer membrane;0.00039816551072479!GO:0008250;oligosaccharyl transferase complex;0.00039816551072479!GO:0043066;negative regulation of apoptosis;0.000428599938662061!GO:0009165;nucleotide biosynthetic process;0.000447330119996061!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00045622262278315!GO:0008033;tRNA processing;0.000476220203391688!GO:0033116;ER-Golgi intermediate compartment membrane;0.000482447240101985!GO:0004576;oligosaccharyl transferase activity;0.00049281709496139!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000576457620418518!GO:0006414;translational elongation;0.000577863860731367!GO:0003729;mRNA binding;0.000578140035120802!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000591569216426507!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000640324917474531!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000680535517680558!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000694217364450493!GO:0050662;coenzyme binding;0.000700661640633421!GO:0008361;regulation of cell size;0.000706841400587809!GO:0006839;mitochondrial transport;0.000755808579044628!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000760703063591192!GO:0051789;response to protein stimulus;0.000818882510168276!GO:0006986;response to unfolded protein;0.000818882510168276!GO:0044452;nucleolar part;0.000819721249819981!GO:0051920;peroxiredoxin activity;0.000838422467778442!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00091122021688869!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00091122021688869!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00091122021688869!GO:0030663;COPI coated vesicle membrane;0.000917232862529101!GO:0030126;COPI vesicle coat;0.000917232862529101!GO:0004527;exonuclease activity;0.000921918271711695!GO:0030036;actin cytoskeleton organization and biogenesis;0.000956951124536054!GO:0016049;cell growth;0.000980128806958994!GO:0005876;spindle microtubule;0.000981084770637127!GO:0046467;membrane lipid biosynthetic process;0.00109267971182129!GO:0048500;signal recognition particle;0.00109267971182129!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00110929037674293!GO:0031323;regulation of cellular metabolic process;0.00121359965738299!GO:0018196;peptidyl-asparagine modification;0.00121359965738299!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00121359965738299!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00123575611985652!GO:0051287;NAD binding;0.00125379606848272!GO:0031072;heat shock protein binding;0.00128872307442881!GO:0005684;U2-dependent spliceosome;0.00130528388480579!GO:0051087;chaperone binding;0.00136207482401942!GO:0000910;cytokinesis;0.00139556513793616!GO:0007017;microtubule-based process;0.00141347453978762!GO:0006289;nucleotide-excision repair;0.00144386054213772!GO:0008312;7S RNA binding;0.00146738142340396!GO:0032984;macromolecular complex disassembly;0.00153824522325154!GO:0015631;tubulin binding;0.00156278810779233!GO:0008180;signalosome;0.00158425389207344!GO:0008047;enzyme activator activity;0.00177017328238901!GO:0000922;spindle pole;0.00177809767680925!GO:0003714;transcription corepressor activity;0.00179540039062203!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0017982091480388!GO:0032508;DNA duplex unwinding;0.0018052090227955!GO:0032392;DNA geometric change;0.0018052090227955!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00196139410969744!GO:0043284;biopolymer biosynthetic process;0.00204599250533946!GO:0030658;transport vesicle membrane;0.00204652931072008!GO:0006402;mRNA catabolic process;0.00206853655649502!GO:0007006;mitochondrial membrane organization and biogenesis;0.00207149819919373!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00213108310246284!GO:0000082;G1/S transition of mitotic cell cycle;0.00213340561465505!GO:0043488;regulation of mRNA stability;0.00214700587368874!GO:0043487;regulation of RNA stability;0.00214700587368874!GO:0005096;GTPase activator activity;0.00216197228916461!GO:0043596;nuclear replication fork;0.00240041109982936!GO:0006268;DNA unwinding during replication;0.00245965707612428!GO:0035258;steroid hormone receptor binding;0.00245965707612428!GO:0006891;intra-Golgi vesicle-mediated transport;0.00245965707612428!GO:0046489;phosphoinositide biosynthetic process;0.00248626451839213!GO:0051540;metal cluster binding;0.00249760031782668!GO:0051536;iron-sulfur cluster binding;0.00249760031782668!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00252791425778597!GO:0045047;protein targeting to ER;0.00252791425778597!GO:0042802;identical protein binding;0.00252791425778597!GO:0006350;transcription;0.00255474847583422!GO:0030118;clathrin coat;0.00260789743888673!GO:0005637;nuclear inner membrane;0.00262182762678405!GO:0030134;ER to Golgi transport vesicle;0.00273198711960654!GO:0030880;RNA polymerase complex;0.00277379244083541!GO:0005791;rough endoplasmic reticulum;0.00280316613205581!GO:0043624;cellular protein complex disassembly;0.00298913673340341!GO:0006352;transcription initiation;0.00299058917780158!GO:0000049;tRNA binding;0.00303336711827143!GO:0048471;perinuclear region of cytoplasm;0.00304988525903987!GO:0030137;COPI-coated vesicle;0.00307591140118373!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00311982616643353!GO:0031124;mRNA 3'-end processing;0.00317109999199234!GO:0043241;protein complex disassembly;0.0032105111175106!GO:0001558;regulation of cell growth;0.00323495819705443!GO:0030132;clathrin coat of coated pit;0.00333666039001188!GO:0030027;lamellipodium;0.00337470169844891!GO:0006275;regulation of DNA replication;0.00338524222253392!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00352529317020145!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00352529317020145!GO:0030029;actin filament-based process;0.00356412793150613!GO:0016044;membrane organization and biogenesis;0.00378951079138929!GO:0000819;sister chromatid segregation;0.00433852982808657!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0043506841126827!GO:0030521;androgen receptor signaling pathway;0.00435626077602617!GO:0004674;protein serine/threonine kinase activity;0.00457684941943668!GO:0003711;transcription elongation regulator activity;0.00464185471700842!GO:0000070;mitotic sister chromatid segregation;0.0047486823976796!GO:0031570;DNA integrity checkpoint;0.00490044792736133!GO:0030127;COPII vesicle coat;0.00501732702490331!GO:0012507;ER to Golgi transport vesicle membrane;0.00501732702490331!GO:0006401;RNA catabolic process;0.00531436830982153!GO:0006595;polyamine metabolic process;0.00554827768264784!GO:0048037;cofactor binding;0.00557486289205181!GO:0006611;protein export from nucleus;0.00558581419795409!GO:0019752;carboxylic acid metabolic process;0.00575021408374123!GO:0006405;RNA export from nucleus;0.00576248488576606!GO:0046483;heterocycle metabolic process;0.00576248488576606!GO:0004518;nuclease activity;0.00589591100074722!GO:0006082;organic acid metabolic process;0.00593617170838988!GO:0030660;Golgi-associated vesicle membrane;0.00599490013582761!GO:0000792;heterochromatin;0.00602364916262227!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00602364916262227!GO:0000428;DNA-directed RNA polymerase complex;0.00602364916262227!GO:0003746;translation elongation factor activity;0.00619796314048229!GO:0004003;ATP-dependent DNA helicase activity;0.00622296555815789!GO:0000725;recombinational repair;0.00624796386727466!GO:0000724;double-strand break repair via homologous recombination;0.00624796386727466!GO:0031901;early endosome membrane;0.00625384836023149!GO:0017166;vinculin binding;0.00639083996823331!GO:0006220;pyrimidine nucleotide metabolic process;0.00640095566896707!GO:0065009;regulation of a molecular function;0.00684810190342237!GO:0005869;dynactin complex;0.00699935462823119!GO:0008092;cytoskeletal protein binding;0.00699935462823119!GO:0005758;mitochondrial intermembrane space;0.00712882908161606!GO:0016251;general RNA polymerase II transcription factor activity;0.00725094282500798!GO:0045045;secretory pathway;0.00726378641966284!GO:0030119;AP-type membrane coat adaptor complex;0.00745645490484457!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00755653320330835!GO:0043022;ribosome binding;0.00775878447475894!GO:0000339;RNA cap binding;0.00776529225952128!GO:0045892;negative regulation of transcription, DNA-dependent;0.00782807240152569!GO:0051539;4 iron, 4 sulfur cluster binding;0.00782807240152569!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00808124897383998!GO:0015002;heme-copper terminal oxidase activity;0.00808124897383998!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00808124897383998!GO:0004129;cytochrome-c oxidase activity;0.00808124897383998!GO:0009116;nucleoside metabolic process;0.00808290057967597!GO:0008139;nuclear localization sequence binding;0.00830376264963502!GO:0006144;purine base metabolic process;0.00854255744468794!GO:0006284;base-excision repair;0.00854500310368511!GO:0016408;C-acyltransferase activity;0.0085983475788301!GO:0009112;nucleobase metabolic process;0.00866835869117932!GO:0006520;amino acid metabolic process;0.00868459780305349!GO:0016272;prefoldin complex;0.00869917149859466!GO:0005773;vacuole;0.00881320873064178!GO:0005832;chaperonin-containing T-complex;0.00889796862130409!GO:0000152;nuclear ubiquitin ligase complex;0.00891440516733482!GO:0043601;nuclear replisome;0.00897605833531657!GO:0030894;replisome;0.00897605833531657!GO:0015992;proton transport;0.00940278014488354!GO:0044454;nuclear chromosome part;0.0094880733319718!GO:0008022;protein C-terminus binding;0.00954915412646713!GO:0006338;chromatin remodeling;0.0097104962353347!GO:0010468;regulation of gene expression;0.00971211349758878!GO:0007021;tubulin folding;0.00974230278824476!GO:0031123;RNA 3'-end processing;0.00975184029096463!GO:0016584;nucleosome positioning;0.00977611526312319!GO:0007050;cell cycle arrest;0.00986866944421863!GO:0030176;integral to endoplasmic reticulum membrane;0.00994315685109719!GO:0048522;positive regulation of cellular process;0.00997399578608288!GO:0000096;sulfur amino acid metabolic process;0.0100687275859056!GO:0065007;biological regulation;0.0101837618910912!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0106070774278302!GO:0006818;hydrogen transport;0.0107232164466992!GO:0031970;organelle envelope lumen;0.0111837236502343!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0113593957051349!GO:0007264;small GTPase mediated signal transduction;0.0113672736711017!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0115245080280572!GO:0015399;primary active transmembrane transporter activity;0.0115245080280572!GO:0048487;beta-tubulin binding;0.0117139779972543!GO:0001726;ruffle;0.0117764733668867!GO:0000178;exosome (RNase complex);0.0119717250109086!GO:0022411;cellular component disassembly;0.0120970520043121!GO:0006270;DNA replication initiation;0.0121542900651043!GO:0006950;response to stress;0.0122050773873818!GO:0030131;clathrin adaptor complex;0.012591246526566!GO:0006650;glycerophospholipid metabolic process;0.0126057166306757!GO:0019206;nucleoside kinase activity;0.0128950316708749!GO:0044262;cellular carbohydrate metabolic process;0.013302379023499!GO:0042393;histone binding;0.0133981780570059!GO:0042770;DNA damage response, signal transduction;0.0134288415278473!GO:0000209;protein polyubiquitination;0.0137481880288174!GO:0000726;non-recombinational repair;0.0137481880288174!GO:0031577;spindle checkpoint;0.0142155895104892!GO:0006007;glucose catabolic process;0.0142271294139074!GO:0005669;transcription factor TFIID complex;0.0145342909564611!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0148923088088726!GO:0008632;apoptotic program;0.0149275505171023!GO:0000077;DNA damage checkpoint;0.0157285156831331!GO:0006497;protein amino acid lipidation;0.0163842195806727!GO:0051128;regulation of cellular component organization and biogenesis;0.0169943672342436!GO:0016197;endosome transport;0.0170931206942341!GO:0046128;purine ribonucleoside metabolic process;0.0173359537710397!GO:0042278;purine nucleoside metabolic process;0.0173359537710397!GO:0006740;NADPH regeneration;0.0173430256918772!GO:0006098;pentose-phosphate shunt;0.0173430256918772!GO:0004177;aminopeptidase activity;0.0174264510026032!GO:0006979;response to oxidative stress;0.0174305435314771!GO:0009303;rRNA transcription;0.017476567922693!GO:0050681;androgen receptor binding;0.017489603334687!GO:0005862;muscle thin filament tropomyosin;0.0176334535009375!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0179541608461632!GO:0005100;Rho GTPase activator activity;0.0180386780282176!GO:0000323;lytic vacuole;0.0181286018540712!GO:0005764;lysosome;0.0181286018540712!GO:0032200;telomere organization and biogenesis;0.0183614324469539!GO:0000723;telomere maintenance;0.0183614324469539!GO:0006509;membrane protein ectodomain proteolysis;0.0184217519527641!GO:0033619;membrane protein proteolysis;0.0184217519527641!GO:0030125;clathrin vesicle coat;0.0184302280328061!GO:0030665;clathrin coated vesicle membrane;0.0184302280328061!GO:0005680;anaphase-promoting complex;0.0187295098729154!GO:0006892;post-Golgi vesicle-mediated transport;0.0190950751731272!GO:0008234;cysteine-type peptidase activity;0.0192589826934757!GO:0000287;magnesium ion binding;0.0194995215028541!GO:0006378;mRNA polyadenylation;0.0197374788142868!GO:0030496;midbody;0.0200001493196525!GO:0015036;disulfide oxidoreductase activity;0.0200659666732198!GO:0030518;steroid hormone receptor signaling pathway;0.0203697248096174!GO:0000793;condensed chromosome;0.0206636975896806!GO:0008652;amino acid biosynthetic process;0.0207923458050587!GO:0022890;inorganic cation transmembrane transporter activity;0.0213206334136091!GO:0032259;methylation;0.0229804485231425!GO:0030041;actin filament polymerization;0.0230526070796902!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0232457596170788!GO:0006376;mRNA splice site selection;0.0233169078889408!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0233169078889408!GO:0016407;acetyltransferase activity;0.0234078868376484!GO:0008408;3'-5' exonuclease activity;0.0240535746291236!GO:0007243;protein kinase cascade;0.0248540255516401!GO:0000086;G2/M transition of mitotic cell cycle;0.0250320198739554!GO:0040029;regulation of gene expression, epigenetic;0.0250320198739554!GO:0006778;porphyrin metabolic process;0.0251194024979365!GO:0033013;tetrapyrrole metabolic process;0.0251194024979365!GO:0008299;isoprenoid biosynthetic process;0.0251525195221362!GO:0043189;H4/H2A histone acetyltransferase complex;0.0252204913046744!GO:0005663;DNA replication factor C complex;0.0257063786763522!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0259937361571187!GO:0031625;ubiquitin protein ligase binding;0.0262092737254894!GO:0007346;regulation of progression through mitotic cell cycle;0.0262092737254894!GO:0009124;nucleoside monophosphate biosynthetic process;0.0262167426494942!GO:0009123;nucleoside monophosphate metabolic process;0.0262167426494942!GO:0006506;GPI anchor biosynthetic process;0.0263752345199635!GO:0031529;ruffle organization and biogenesis;0.0263752345199635!GO:0006266;DNA ligation;0.0269331944733991!GO:0008097;5S rRNA binding;0.0269331944733991!GO:0006607;NLS-bearing substrate import into nucleus;0.0271580375065864!GO:0047485;protein N-terminus binding;0.0274231702855764!GO:0051053;negative regulation of DNA metabolic process;0.0274705830685227!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0281367966369217!GO:0004532;exoribonuclease activity;0.0281414725987513!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0281414725987513!GO:0031371;ubiquitin conjugating enzyme complex;0.0282084453878189!GO:0007569;cell aging;0.0287420340976852!GO:0035267;NuA4 histone acetyltransferase complex;0.0289101250672244!GO:0045941;positive regulation of transcription;0.0300957904848958!GO:0033673;negative regulation of kinase activity;0.0302978899091379!GO:0006469;negative regulation of protein kinase activity;0.0302978899091379!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0305877534521222!GO:0016125;sterol metabolic process;0.0308475352960201!GO:0043130;ubiquitin binding;0.0310796979922264!GO:0032182;small conjugating protein binding;0.0310796979922264!GO:0000781;chromosome, telomeric region;0.0310802616358722!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0312566002417753!GO:0030659;cytoplasmic vesicle membrane;0.031472271213827!GO:0006541;glutamine metabolic process;0.0315726024282265!GO:0004448;isocitrate dehydrogenase activity;0.0316664081627744!GO:0006505;GPI anchor metabolic process;0.0319667462790317!GO:0003677;DNA binding;0.0319667462790317!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0333516540230746!GO:0006779;porphyrin biosynthetic process;0.0335244725833759!GO:0033014;tetrapyrrole biosynthetic process;0.0335244725833759!GO:0031902;late endosome membrane;0.0335244725833759!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0338258700708239!GO:0006118;electron transport;0.0342596806408712!GO:0019783;small conjugating protein-specific protease activity;0.0343112538400034!GO:0009451;RNA modification;0.0344545338061325!GO:0006730;one-carbon compound metabolic process;0.0344545338061325!GO:0030145;manganese ion binding;0.0346241655110828!GO:0042158;lipoprotein biosynthetic process;0.034703806727817!GO:0008154;actin polymerization and/or depolymerization;0.0347528295286811!GO:0005784;translocon complex;0.0347928668786344!GO:0051348;negative regulation of transferase activity;0.0349836019960902!GO:0007004;telomere maintenance via telomerase;0.0355661774241212!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0358658274908807!GO:0003756;protein disulfide isomerase activity;0.036150187026187!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.036150187026187!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0364406039425078!GO:0045893;positive regulation of transcription, DNA-dependent;0.0369388181039306!GO:0000084;S phase of mitotic cell cycle;0.037114762586024!GO:0008538;proteasome activator activity;0.037133784422539!GO:0030384;phosphoinositide metabolic process;0.037133784422539!GO:0030508;thiol-disulfide exchange intermediate activity;0.037133784422539!GO:0004843;ubiquitin-specific protease activity;0.0371682840376881!GO:0007034;vacuolar transport;0.0373202728513878!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0379125941057847!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0379125941057847!GO:0009262;deoxyribonucleotide metabolic process;0.0380155154309053!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0383458223615762!GO:0010257;NADH dehydrogenase complex assembly;0.0383458223615762!GO:0033108;mitochondrial respiratory chain complex assembly;0.0383458223615762!GO:0051656;establishment of organelle localization;0.0383903734967243!GO:0003887;DNA-directed DNA polymerase activity;0.0389797249729715!GO:0043414;biopolymer methylation;0.0392658906511138!GO:0042026;protein refolding;0.0393233285601988!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0397016984017215!GO:0040008;regulation of growth;0.0397016984017215!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0399296425096427!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0399352923686701!GO:0016790;thiolester hydrolase activity;0.0399750555251754!GO:0017134;fibroblast growth factor binding;0.0405250881373598!GO:0030911;TPR domain binding;0.0417751548055385!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0425363750084327!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0425363750084327!GO:0006984;ER-nuclear signaling pathway;0.0426937664064837!GO:0030032;lamellipodium biogenesis;0.0433099219851921!GO:0006739;NADP metabolic process;0.0437000980369894!GO:0008536;Ran GTPase binding;0.0437245636790703!GO:0004523;ribonuclease H activity;0.0441590800401796!GO:0032774;RNA biosynthetic process;0.0442333285554707!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0442595187670179!GO:0050790;regulation of catalytic activity;0.0446227143444318!GO:0044433;cytoplasmic vesicle part;0.0447149431375764!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0447674896927222!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0453945667255878!GO:0048146;positive regulation of fibroblast proliferation;0.045745415493928!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0461346281381544!GO:0005099;Ras GTPase activator activity;0.0471368742728639!GO:0000097;sulfur amino acid biosynthetic process;0.0471826099068021!GO:0009066;aspartate family amino acid metabolic process;0.0479685536853628!GO:0003988;acetyl-CoA C-acyltransferase activity;0.048141349797904!GO:0008629;induction of apoptosis by intracellular signals;0.0490939659671923!GO:0009119;ribonucleoside metabolic process;0.0495822247495305!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0495822247495305
 
|sample_id=11238
 
|sample_id=11238
 
|sample_note=
 
|sample_note=
Line 75: Line 105:
 
|sample_tissue=periodontal ligament
 
|sample_tissue=periodontal ligament
 
|top_motifs=NKX2-2,8:1.62038246593;GFI1:1.37212230029;PAX8:1.30661164155;TFDP1:1.28046076878;E2F1..5:1.2792540249;ZNF238:1.26178601192;NFY{A,B,C}:1.17465572785;FOXD3:1.12798579662;NKX6-1,2:1.0945143946;CDC5L:1.08909654694;AIRE:1.07167067676;PAX4:1.03597824181;PDX1:1.02836234867;NKX3-1:1.01817027731;MYBL2:0.906610742071;TEF:0.87743910766;MYB:0.838034982959;POU3F1..4:0.832006289197;LHX3,4:0.81527663999;NR1H4:0.780992351677;FOX{I1,J2}:0.743769826919;EN1,2:0.721513671209;ZIC1..3:0.713857834198;ALX4:0.693777458035;GZF1:0.679462615254;ZNF143:0.669455610465;TOPORS:0.668128766655;HOX{A4,D4}:0.645399894096;HBP1_HMGB_SSRP1_UBTF:0.641544436583;NRF1:0.636396108921;FOXP1:0.631802458952;FOXQ1:0.601432870489;SOX17:0.600475416978;POU1F1:0.572798619881;ONECUT1,2:0.565044613309;NKX2-1,4:0.55386967988;GFI1B:0.553262704747;EVI1:0.499632668184;NANOG:0.486924633601;NFIX:0.486060182174;PBX1:0.46039634171;YY1:0.397934643542;PRRX1,2:0.392912762045;TGIF1:0.349773255342;RXR{A,B,G}:0.341995790312;TEAD1:0.330024517707;NR3C1:0.329935390517;GTF2A1,2:0.316610131467;GATA4:0.313912701631;NKX2-3_NKX2-5:0.312602415866;KLF4:0.312431578632;FOXO1,3,4:0.310857058102;NFATC1..3:0.300177397618;STAT5{A,B}:0.293196671063;CDX1,2,4:0.28337842468;HOX{A5,B5}:0.271921747923;FOXA2:0.268530059746;TLX1..3_NFIC{dimer}:0.25341897693;ELK1,4_GABP{A,B1}:0.24965615031;PAX5:0.249512779201;HAND1,2:0.242235585152;PITX1..3:0.228404479816;BACH2:0.227138966788;HSF1,2:0.226723997817;TBX4,5:0.224572109766;UFEwm:0.22310240775;HOX{A6,A7,B6,B7}:0.219921219909;XCPE1{core}:0.202147309312;PAX6:0.20082510023;HES1:0.195818172978;LEF1_TCF7_TCF7L1,2:0.189377040219;MZF1:0.189330020078;GTF2I:0.185272104609;PRDM1:0.164751236552;POU2F1..3:0.160053557236;STAT1,3:0.151166945027;TAL1_TCF{3,4,12}:0.145119567212;NANOG{mouse}:0.144366373804;TFAP4:0.135415807765;SPZ1:0.125802311021;NFE2L2:0.114306354526;FOS_FOS{B,L1}_JUN{B,D}:0.111843239494;ZBTB16:0.105011007807;ZNF384:0.101457938752;FOX{F1,F2,J1}:0.0965616849435;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0952641454967;SOX5:0.0707861374241;T:0.0503491911012;AHR_ARNT_ARNT2:0.0422401978396;BPTF:0.0403220507835;FOXM1:0.035740619578;FOXL1:0.0170430749157;ARID5B:0.0160919901344;GCM1,2:0.0110245157908;ELF1,2,4:0.00928696451506;AR:-0.0349868149299;CEBPA,B_DDIT3:-0.0350300395107;FOSL2:-0.0376158145114;CRX:-0.0376542466655;SP1:-0.0446724963838;BREu{core}:-0.0575919765081;PATZ1:-0.0608749591063;MAZ:-0.0625262070401;EBF1:-0.0645379139388;ALX1:-0.0654073905493;PPARG:-0.0731254325603;ADNP_IRX_SIX_ZHX:-0.0789603114881;HNF4A_NR2F1,2:-0.0847110749144;SOX2:-0.085297844835;TP53:-0.0887724010622;NFE2:-0.101792943867;RFX1:-0.111623708779;ATF6:-0.11917133963;HNF1A:-0.124283381035;PAX1,9:-0.136102445431;HMGA1,2:-0.145486102772;SRF:-0.153133069379;POU5F1:-0.161404957324;NHLH1,2:-0.16746030788;NKX3-2:-0.167979780537;HLF:-0.178039434094;TFAP2{A,C}:-0.182927779451;TBP:-0.184785019247;ZFP161:-0.193268311913;MTE{core}:-0.193340910534;OCT4_SOX2{dimer}:-0.195958432388;DMAP1_NCOR{1,2}_SMARC:-0.203209660669;XBP1:-0.20444747449;HIC1:-0.218864805797;SOX{8,9,10}:-0.244847409815;RFX2..5_RFXANK_RFXAP:-0.253587233281;CREB1:-0.261152482265;MEF2{A,B,C,D}:-0.268317916052;RUNX1..3:-0.271072326822;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.27488845664;IKZF2:-0.279161500398;IKZF1:-0.279527140988;GATA6:-0.281481795638;RREB1:-0.319414947193;CUX2:-0.320517213748;DBP:-0.334416724974;MTF1:-0.360206728806;MED-1{core}:-0.36064401982;JUN:-0.363943956925;PAX3,7:-0.36456141176;NR5A1,2:-0.365556204104;GLI1..3:-0.376853434499;HOXA9_MEIS1:-0.38275527777;ESR1:-0.419100138626;FOXN1:-0.425751390043;SPI1:-0.442540985011;IRF1,2:-0.44531085753;ATF5_CREB3:-0.454891228996;ATF4:-0.457119595523;RBPJ:-0.479266551818;ZNF148:-0.479419899258;NFIL3:-0.480319458495;IRF7:-0.489124784428;EGR1..3:-0.49717549581;ZNF423:-0.498309375339;TFCP2:-0.505919929539;NFE2L1:-0.528525115002;SPIB:-0.534808140867;REST:-0.554988008969;NFKB1_REL_RELA:-0.558098498516;MYFfamily:-0.560553397296;TFAP2B:-0.564175612836;STAT2,4,6:-0.57179118856;ETS1,2:-0.58557865982;SNAI1..3:-0.590224698277;ZBTB6:-0.594935850583;ESRRA:-0.635950786203;FOXP3:-0.650843509422;POU6F1:-0.674671787561;RORA:-0.689204366283;VSX1,2:-0.712837803483;NR6A1:-0.723565142057;LMO2:-0.737697360988;SREBF1,2:-0.798974825331;FOX{D1,D2}:-0.81861900475;EP300:-0.825477285232;ZEB1:-0.85666092797;bHLH_family:-0.856732569767;MYOD1:-0.862566849801;ATF2:-0.873733236967;HIF1A:-0.924711057668;RXRA_VDR{dimer}:-0.943851565858;PAX2:-0.959486076757;SMAD1..7,9:-1.03081874304;TLX2:-1.03548533566;MAFB:-1.10376078894;HMX1:-1.14108600897
 
|top_motifs=NKX2-2,8:1.62038246593;GFI1:1.37212230029;PAX8:1.30661164155;TFDP1:1.28046076878;E2F1..5:1.2792540249;ZNF238:1.26178601192;NFY{A,B,C}:1.17465572785;FOXD3:1.12798579662;NKX6-1,2:1.0945143946;CDC5L:1.08909654694;AIRE:1.07167067676;PAX4:1.03597824181;PDX1:1.02836234867;NKX3-1:1.01817027731;MYBL2:0.906610742071;TEF:0.87743910766;MYB:0.838034982959;POU3F1..4:0.832006289197;LHX3,4:0.81527663999;NR1H4:0.780992351677;FOX{I1,J2}:0.743769826919;EN1,2:0.721513671209;ZIC1..3:0.713857834198;ALX4:0.693777458035;GZF1:0.679462615254;ZNF143:0.669455610465;TOPORS:0.668128766655;HOX{A4,D4}:0.645399894096;HBP1_HMGB_SSRP1_UBTF:0.641544436583;NRF1:0.636396108921;FOXP1:0.631802458952;FOXQ1:0.601432870489;SOX17:0.600475416978;POU1F1:0.572798619881;ONECUT1,2:0.565044613309;NKX2-1,4:0.55386967988;GFI1B:0.553262704747;EVI1:0.499632668184;NANOG:0.486924633601;NFIX:0.486060182174;PBX1:0.46039634171;YY1:0.397934643542;PRRX1,2:0.392912762045;TGIF1:0.349773255342;RXR{A,B,G}:0.341995790312;TEAD1:0.330024517707;NR3C1:0.329935390517;GTF2A1,2:0.316610131467;GATA4:0.313912701631;NKX2-3_NKX2-5:0.312602415866;KLF4:0.312431578632;FOXO1,3,4:0.310857058102;NFATC1..3:0.300177397618;STAT5{A,B}:0.293196671063;CDX1,2,4:0.28337842468;HOX{A5,B5}:0.271921747923;FOXA2:0.268530059746;TLX1..3_NFIC{dimer}:0.25341897693;ELK1,4_GABP{A,B1}:0.24965615031;PAX5:0.249512779201;HAND1,2:0.242235585152;PITX1..3:0.228404479816;BACH2:0.227138966788;HSF1,2:0.226723997817;TBX4,5:0.224572109766;UFEwm:0.22310240775;HOX{A6,A7,B6,B7}:0.219921219909;XCPE1{core}:0.202147309312;PAX6:0.20082510023;HES1:0.195818172978;LEF1_TCF7_TCF7L1,2:0.189377040219;MZF1:0.189330020078;GTF2I:0.185272104609;PRDM1:0.164751236552;POU2F1..3:0.160053557236;STAT1,3:0.151166945027;TAL1_TCF{3,4,12}:0.145119567212;NANOG{mouse}:0.144366373804;TFAP4:0.135415807765;SPZ1:0.125802311021;NFE2L2:0.114306354526;FOS_FOS{B,L1}_JUN{B,D}:0.111843239494;ZBTB16:0.105011007807;ZNF384:0.101457938752;FOX{F1,F2,J1}:0.0965616849435;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0952641454967;SOX5:0.0707861374241;T:0.0503491911012;AHR_ARNT_ARNT2:0.0422401978396;BPTF:0.0403220507835;FOXM1:0.035740619578;FOXL1:0.0170430749157;ARID5B:0.0160919901344;GCM1,2:0.0110245157908;ELF1,2,4:0.00928696451506;AR:-0.0349868149299;CEBPA,B_DDIT3:-0.0350300395107;FOSL2:-0.0376158145114;CRX:-0.0376542466655;SP1:-0.0446724963838;BREu{core}:-0.0575919765081;PATZ1:-0.0608749591063;MAZ:-0.0625262070401;EBF1:-0.0645379139388;ALX1:-0.0654073905493;PPARG:-0.0731254325603;ADNP_IRX_SIX_ZHX:-0.0789603114881;HNF4A_NR2F1,2:-0.0847110749144;SOX2:-0.085297844835;TP53:-0.0887724010622;NFE2:-0.101792943867;RFX1:-0.111623708779;ATF6:-0.11917133963;HNF1A:-0.124283381035;PAX1,9:-0.136102445431;HMGA1,2:-0.145486102772;SRF:-0.153133069379;POU5F1:-0.161404957324;NHLH1,2:-0.16746030788;NKX3-2:-0.167979780537;HLF:-0.178039434094;TFAP2{A,C}:-0.182927779451;TBP:-0.184785019247;ZFP161:-0.193268311913;MTE{core}:-0.193340910534;OCT4_SOX2{dimer}:-0.195958432388;DMAP1_NCOR{1,2}_SMARC:-0.203209660669;XBP1:-0.20444747449;HIC1:-0.218864805797;SOX{8,9,10}:-0.244847409815;RFX2..5_RFXANK_RFXAP:-0.253587233281;CREB1:-0.261152482265;MEF2{A,B,C,D}:-0.268317916052;RUNX1..3:-0.271072326822;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.27488845664;IKZF2:-0.279161500398;IKZF1:-0.279527140988;GATA6:-0.281481795638;RREB1:-0.319414947193;CUX2:-0.320517213748;DBP:-0.334416724974;MTF1:-0.360206728806;MED-1{core}:-0.36064401982;JUN:-0.363943956925;PAX3,7:-0.36456141176;NR5A1,2:-0.365556204104;GLI1..3:-0.376853434499;HOXA9_MEIS1:-0.38275527777;ESR1:-0.419100138626;FOXN1:-0.425751390043;SPI1:-0.442540985011;IRF1,2:-0.44531085753;ATF5_CREB3:-0.454891228996;ATF4:-0.457119595523;RBPJ:-0.479266551818;ZNF148:-0.479419899258;NFIL3:-0.480319458495;IRF7:-0.489124784428;EGR1..3:-0.49717549581;ZNF423:-0.498309375339;TFCP2:-0.505919929539;NFE2L1:-0.528525115002;SPIB:-0.534808140867;REST:-0.554988008969;NFKB1_REL_RELA:-0.558098498516;MYFfamily:-0.560553397296;TFAP2B:-0.564175612836;STAT2,4,6:-0.57179118856;ETS1,2:-0.58557865982;SNAI1..3:-0.590224698277;ZBTB6:-0.594935850583;ESRRA:-0.635950786203;FOXP3:-0.650843509422;POU6F1:-0.674671787561;RORA:-0.689204366283;VSX1,2:-0.712837803483;NR6A1:-0.723565142057;LMO2:-0.737697360988;SREBF1,2:-0.798974825331;FOX{D1,D2}:-0.81861900475;EP300:-0.825477285232;ZEB1:-0.85666092797;bHLH_family:-0.856732569767;MYOD1:-0.862566849801;ATF2:-0.873733236967;HIF1A:-0.924711057668;RXRA_VDR{dimer}:-0.943851565858;PAX2:-0.959486076757;SMAD1..7,9:-1.03081874304;TLX2:-1.03548533566;MAFB:-1.10376078894;HMX1:-1.14108600897
 +
|xref=
 +
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11238-116D5;search_select_hide=table117:FF:11238-116D5
 
}}
 
}}

Latest revision as of 07:26, 3 June 2020

Name:Fibroblast - Periodontal Ligament, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10867
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueperiodontal ligament
dev stagefetus
sexunknown
agefetal
cell typefibroblast
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1229
catalog numberSC2635
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005091
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10867 CAGE DRX008274 DRR009146
Accession ID Hg19

Library idBAMCTSS
CNhs10867 DRZ000571 DRZ001956
Accession ID Hg38

Library idBAMCTSS
CNhs10867 DRZ011921 DRZ013306
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005091
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10007.ACAGTG sRNA-Seq DRX037092 DRR041458
Accession ID Hg19

Library idBAMCTSS
SRhi10007.ACAGTG DRZ007100


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.105
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.631
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0676
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0472
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0852
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.219
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0676
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.178
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.187
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.149
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.645
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0355
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0102
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0491
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.522
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.136
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0676
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.124
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.126
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.303
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10867

Jaspar motifP-value
MA0002.20.0179
MA0003.10.271
MA0004.10.375
MA0006.10.795
MA0007.10.457
MA0009.10.812
MA0014.10.175
MA0017.10.032
MA0018.20.0024
MA0019.10.065
MA0024.18.06356e-11
MA0025.10.00566
MA0027.10.52
MA0028.10.00478
MA0029.10.445
MA0030.10.14
MA0031.10.179
MA0035.20.0128
MA0038.15.27995e-6
MA0039.20.281
MA0040.10.444
MA0041.10.18
MA0042.10.582
MA0043.10.00147
MA0046.10.749
MA0047.20.539
MA0048.15.58281e-4
MA0050.11.6113e-4
MA0051.10.00377
MA0052.10.444
MA0055.14.0317e-5
MA0057.10.988
MA0058.10.228
MA0059.10.851
MA0060.13.86453e-13
MA0061.11.54949e-4
MA0062.20.787
MA0065.20.0343
MA0066.10.681
MA0067.10.0172
MA0068.10.362
MA0069.10.283
MA0070.10.935
MA0071.10.963
MA0072.10.74
MA0073.10.23
MA0074.10.329
MA0076.10.0192
MA0077.10.678
MA0078.10.59
MA0079.20.0077
MA0080.23.25551e-12
MA0081.10.0863
MA0083.10.126
MA0084.10.0167
MA0087.10.534
MA0088.12.3556e-4
MA0090.10.152
MA0091.10.334
MA0092.10.686
MA0093.10.327
MA0099.20.917
MA0100.10.0621
MA0101.10.00347
MA0102.20.00233
MA0103.12.36139e-4
MA0104.20.651
MA0105.10.11
MA0106.10.454
MA0107.12.23011e-5
MA0108.20.0168
MA0111.10.903
MA0112.20.193
MA0113.10.77
MA0114.10.236
MA0115.10.722
MA0116.10.323
MA0117.10.486
MA0119.10.257
MA0122.10.457
MA0124.10.175
MA0125.10.22
MA0131.10.111
MA0135.10.0983
MA0136.11.89127e-8
MA0137.20.641
MA0138.20.256
MA0139.10.904
MA0140.10.389
MA0141.10.615
MA0142.10.538
MA0143.10.719
MA0144.10.299
MA0145.10.165
MA0146.10.599
MA0147.10.717
MA0148.10.516
MA0149.10.449
MA0150.10.0419
MA0152.10.00126
MA0153.10.259
MA0154.10.0347
MA0155.10.0646
MA0156.15.65251e-4
MA0157.10.216
MA0159.10.00553
MA0160.10.188
MA0162.10.128
MA0163.10.84
MA0164.10.146
MA0258.10.114
MA0259.10.277



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10867

Novel motifP-value
10.653
100.251
1000.353
1010.995
1020.295
1030.128
1040.739
1050.626
1061.26575e-4
1070.219
1080.203
1090.957
110.702
1100.194
1110.906
1120.0588
1130.188
1140.0735
1150.54
1160.61
1170.485
1180.842
1190.332
120.858
1200.903
1210.739
1220.0575
1230.493
1240.995
1250.363
1260.938
1270.7
1280.0345
1290.516
130.582
1300.00508
1310.471
1320.582
1330.596
1340.0875
1350.0186
1360.764
1370.188
1380.141
1397.19341e-7
140.302
1400.662
1410.285
1420.331
1430.246
1440.648
1450.375
1460.873
1470.158
1480.234
1490.191
150.356
1500.954
1510.142
1520.0275
1530.855
1540.982
1550.0433
1560.605
1570.108
1580.101
1590.203
160.462
1600.289
1610.787
1620.311
1630.648
1640.797
1650.576
1660.817
1670.63
1680.172
1690.254
170.264
180.672
190.705
20.228
200.277
210.0495
220.513
230.0429
240.288
250.444
260.397
270.133
280.458
290.619
30.855
300.592
310.637
320.848
330.257
340.395
350.32
360.929
370.648
380.42
390.961
40.0927
400.773
410.0377
420.678
430.457
440.312
450.0814
460.829
470.861
480.715
490.492
50.282
500.284
510.65
520.0545
530.663
540.68
550.47
560.963
570.638
580.0826
590.209
60.598
600.0094
610.668
620.0869
630.682
640.803
650.0913
660.012
670.655
680.608
690.425
70.471
700.0552
710.879
720.434
730.196
740.26
750.728
760.686
770.544
780.737
790.375
80.862
800.0932
810.667
820.0119
830.888
840.536
850.0141
860.207
870.905
880.203
890.171
90.468
900.708
910.889
920.0621
930.626
940.444
950.728
960.838
970.924
980.338
990.00562



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10867


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002556 (fibroblast of periodontium)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001758 (periodontium)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0000165 (mouth)
0003672 (dentition)
0011137 (axial skeletal system)
0010323 (cranial skeletal system)
0003129 (skull)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000067 (human fibroblast of periodontium sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)