FFCP PHASE1:Mm9::chr12:47919969..47919991,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=664883|HGNC=|MCL_coexpression_id=87|UniProt=Q9JKN6|association_with_transcript=-207bp_to_ENSMUST00000021438,NM_021361,uc007nmd.2,uc007nme.2_5end|description=CAGE_peak_2_at_Nova1_5end|id=chr12:47919969..47919991,-|ontology_enrichment_celltype=CL:0000117!1.76e-13!23;CL:0000337!1.76e-13!23;CL:0000540!3.13e-13!33;CL:0000047!3.13e-13!33;CL:0000031!3.13e-13!33;CL:0000404!3.13e-13!33;CL:0002319!1.10e-12!43;CL:0000221!1.49e-12!44;CL:0000133!1.49e-12!44;CL:0000393!7.85e-09!39;CL:0000211!7.85e-09!39;CL:0000055!1.98e-08!50|ontology_enrichment_celltype_v019_2=CL:0000117,5.01e-17,23;CL:0000337,5.01e-17,23;CL:0000540,8.55e-15,33;CL:0000047,8.55e-15,33;CL:0000031,8.55e-15,33;CL:0000404,8.55e-15,33;CL:0002319,1.44e-12,43;CL:0000221,5.24e-12,44;CL:0000133,5.24e-12,44;CL:0000393,8.13e-11,39;CL:0000211,8.13e-11,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.53e-29!102;UBERON:0000924!1.53e-29!102;UBERON:0006601!1.53e-29!102;UBERON:0001017!1.70e-27!73;UBERON:0005743!1.70e-27!73;UBERON:0000073!3.97e-27!75;UBERON:0001016!3.97e-27!75;UBERON:0002346!1.30e-22!71;UBERON:0003075!1.30e-22!71;UBERON:0007284!1.30e-22!71;UBERON:0000033!4.03e-22!63;UBERON:0001049!2.94e-21!52;UBERON:0005068!2.94e-21!52;UBERON:0006241!2.94e-21!52;UBERON:0007135!2.94e-21!52;UBERON:0000955!1.82e-19!50;UBERON:0006238!1.82e-19!50;UBERON:0002616!6.67e-19!49;UBERON:0003056!2.67e-18!49;UBERON:0002020!9.98e-17!34;UBERON:0003080!2.44e-15!40;UBERON:0002780!1.14e-14!39;UBERON:0001890!1.14e-14!39;UBERON:0006240!1.14e-14!39;UBERON:0002791!3.08e-13!29;UBERON:0003528!3.08e-13!29;UBERON:0001893!3.08e-13!29;UBERON:0000153!1.19e-08!94;UBERON:0007811!1.20e-08!86;UBERON:0000468!1.73e-08!333;UBERON:0000956!2.29e-08!21;UBERON:0001869!2.29e-08!21;UBERON:0000203!2.29e-08!21;UBERON:0002619!1.20e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.01e-30,95;UBERON:0000924,1.01e-30,95;UBERON:0006601,1.01e-30,95;UBERON:0001017,1.24e-29,73;UBERON:0002346,2.83e-28,64;UBERON:0003075,2.83e-28,64;UBERON:0007284,2.83e-28,64;UBERON:0001016,3.52e-28,75;UBERON:0010371,3.48e-26,73;UBERON:0000073,8.51e-26,54;UBERON:0001049,3.45e-24,52;UBERON:0005068,3.45e-24,52;UBERON:0006241,3.45e-24,52;UBERON:0007135,3.45e-24,52;UBERON:0002020,2.24e-20,34;UBERON:0003056,3.64e-20,49;UBERON:0000955,1.49e-19,47;UBERON:0006238,1.49e-19,47;UBERON:0002616,7.27e-19,46;UBERON:0003080,2.28e-16,40;UBERON:0003528,6.79e-16,29;UBERON:0002791,6.79e-16,29;UBERON:0001893,6.79e-16,29;UBERON:0002780,1.53e-15,39;UBERON:0001890,1.53e-15,39;UBERON:0006240,1.53e-15,39;UBERON:0010314,2.48e-14,92;UBERON:0000956,1.14e-09,21;UBERON:0001869,1.14e-09,21;UBERON:0000203,1.14e-09,21;UBERON:0002619,1.05e-08,17;UBERON:0003076,1.31e-08,12;UBERON:0003057,1.31e-08,12;UBERON:0002420,6.94e-08,8;UBERON:0007245,6.94e-08,8;UBERON:0010009,6.94e-08,8;UBERON:0010011,6.94e-08,8;UBERON:0000454,6.94e-08,8;UBERON:0002021,2.41e-07,10;UBERON:0000411,2.41e-07,10;UBERON:0001950,2.41e-07,10;UBERON:0002240,8.43e-07,6;UBERON:0005174,8.43e-07,6;UBERON:0001137,8.43e-07,6|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9559956734746,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0,1.09012578190223,0.878744730937887,1.55543919259427,0.699932108126813,1.43752564364972,0,0,0,0,0,0,25.0872411465901,31.739458756322,32.9592329823213,0,0,0,0,0,2.39680088414724,2.68952813725088,1.34796496001021,1.35005938331691,1.26194976810829,17.7103610330358,16.1234034894678,3.55223317723367,5.271500906003,1.83843757322004,9.91042928994498,11.2364857514965,15.6678663921368,27.1685752724199,29.916459457988,25.5247551572812,12.2840519560608,10.1297269805702,11.3070703354839,25.9273155216828,28.6167078406197,30.7559085611746,0.605809546665472,0.453429360640713,0,0,0,0,0,0,0.140444420131752,0,0,0,0.563373679106722,0,0,0,0,0,0.505524445014783,0.45673551887624,0,0.445326417194474,0.173485326766136,0.304465478312141,0.691846491768175,0.753613202763113,0.940709657085638,0,0,2.4581890676385,0.884610551949874,0.647067399789637,0.883366073841574,0.484875253135222,0,14.3462590535658,10.0534419270458,0,0,0,0,22.3188052713186,11.8950156732843,5.27748278874031,8.16974304903699,6.39288643325826,15.9996794310861,9.24775199486219,1.01839363850316,0.248813941220186,0.252722758433675,1.47309299120532,1.56144531555244,2.29902104433473,5.58192602396583,4.37043971723574,4.42237244483631,3.97152532883034,3.37326208415024,2.06962696591213,0.431135985865684,0.378212160335639,0.527853372491847,1.7535658594206,0.834141747676794,1.0447564995665,1.4404749548556,0,0,0,0,1.24275463521301,0,0.180062061461015,0.710234206755631,0,0.462801338662135,0.232533944750408,0,0,0,0.492502392237286,0.324275238183423,0,0.878200461164203,0.268412837520744,5.88811855979556,3.19004298375782,0.330418782983798,0,0.213288250535234,0.464473343720877,0.644337306610467,0.403367049246685,0,0.190225626112559,0.474529061544512,0.164698954724011,0,0.596869416123452,0.19496408711912,0,0,0,0.948339504765408,0.5712425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| ||
|EntrezGene=664883 | |||
|HGNC= | |||
|MCL_coexpression_id=87 | |||
|UniProt=Q9JKN6 | |||
|association_with_transcript=-207bp_to_ENSMUST00000021438,NM_021361,uc007nmd.2,uc007nme.2_5end | |||
|description=CAGE_peak_2_at_Nova1_5end | |||
|id=chr12:47919969..47919991,- | |||
|ontology_enrichment_celltype=CL:0000117!1.76e-13!23;CL:0000337!1.76e-13!23;CL:0000540!3.13e-13!33;CL:0000047!3.13e-13!33;CL:0000031!3.13e-13!33;CL:0000404!3.13e-13!33;CL:0002319!1.10e-12!43;CL:0000221!1.49e-12!44;CL:0000133!1.49e-12!44;CL:0000393!7.85e-09!39;CL:0000211!7.85e-09!39;CL:0000055!1.98e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.01e-17,23;CL:0000337,5.01e-17,23;CL:0000540,8.55e-15,33;CL:0000047,8.55e-15,33;CL:0000031,8.55e-15,33;CL:0000404,8.55e-15,33;CL:0002319,1.44e-12,43;CL:0000221,5.24e-12,44;CL:0000133,5.24e-12,44;CL:0000393,8.13e-11,39;CL:0000211,8.13e-11,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.53e-29!102;UBERON:0000924!1.53e-29!102;UBERON:0006601!1.53e-29!102;UBERON:0001017!1.70e-27!73;UBERON:0005743!1.70e-27!73;UBERON:0000073!3.97e-27!75;UBERON:0001016!3.97e-27!75;UBERON:0002346!1.30e-22!71;UBERON:0003075!1.30e-22!71;UBERON:0007284!1.30e-22!71;UBERON:0000033!4.03e-22!63;UBERON:0001049!2.94e-21!52;UBERON:0005068!2.94e-21!52;UBERON:0006241!2.94e-21!52;UBERON:0007135!2.94e-21!52;UBERON:0000955!1.82e-19!50;UBERON:0006238!1.82e-19!50;UBERON:0002616!6.67e-19!49;UBERON:0003056!2.67e-18!49;UBERON:0002020!9.98e-17!34;UBERON:0003080!2.44e-15!40;UBERON:0002780!1.14e-14!39;UBERON:0001890!1.14e-14!39;UBERON:0006240!1.14e-14!39;UBERON:0002791!3.08e-13!29;UBERON:0003528!3.08e-13!29;UBERON:0001893!3.08e-13!29;UBERON:0000153!1.19e-08!94;UBERON:0007811!1.20e-08!86;UBERON:0000468!1.73e-08!333;UBERON:0000956!2.29e-08!21;UBERON:0001869!2.29e-08!21;UBERON:0000203!2.29e-08!21;UBERON:0002619!1.20e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.01e-30,95;UBERON:0000924,1.01e-30,95;UBERON:0006601,1.01e-30,95;UBERON:0001017,1.24e-29,73;UBERON:0002346,2.83e-28,64;UBERON:0003075,2.83e-28,64;UBERON:0007284,2.83e-28,64;UBERON:0001016,3.52e-28,75;UBERON:0010371,3.48e-26,73;UBERON:0000073,8.51e-26,54;UBERON:0001049,3.45e-24,52;UBERON:0005068,3.45e-24,52;UBERON:0006241,3.45e-24,52;UBERON:0007135,3.45e-24,52;UBERON:0002020,2.24e-20,34;UBERON:0003056,3.64e-20,49;UBERON:0000955,1.49e-19,47;UBERON:0006238,1.49e-19,47;UBERON:0002616,7.27e-19,46;UBERON:0003080,2.28e-16,40;UBERON:0003528,6.79e-16,29;UBERON:0002791,6.79e-16,29;UBERON:0001893,6.79e-16,29;UBERON:0002780,1.53e-15,39;UBERON:0001890,1.53e-15,39;UBERON:0006240,1.53e-15,39;UBERON:0010314,2.48e-14,92;UBERON:0000956,1.14e-09,21;UBERON:0001869,1.14e-09,21;UBERON:0000203,1.14e-09,21;UBERON:0002619,1.05e-08,17;UBERON:0003076,1.31e-08,12;UBERON:0003057,1.31e-08,12;UBERON:0002420,6.94e-08,8;UBERON:0007245,6.94e-08,8;UBERON:0010009,6.94e-08,8;UBERON:0010011,6.94e-08,8;UBERON:0000454,6.94e-08,8;UBERON:0002021,2.41e-07,10;UBERON:0000411,2.41e-07,10;UBERON:0001950,2.41e-07,10;UBERON:0002240,8.43e-07,6;UBERON:0005174,8.43e-07,6;UBERON:0001137,8.43e-07,6 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9559956734746,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0,1.09012578190223,0.878744730937887,1.55543919259427,0.699932108126813,1.43752564364972,0,0,0,0,0,0,25.0872411465901,31.739458756322,32.9592329823213,0,0,0,0,0,2.39680088414724,2.68952813725088,1.34796496001021,1.35005938331691,1.26194976810829,17.7103610330358,16.1234034894678,3.55223317723367,5.271500906003,1.83843757322004,9.91042928994498,11.2364857514965,15.6678663921368,27.1685752724199,29.916459457988,25.5247551572812,12.2840519560608,10.1297269805702,11.3070703354839,25.9273155216828,28.6167078406197,30.7559085611746,0.605809546665472,0.453429360640713,0,0,0,0,0,0,0.140444420131752,0,0,0,0.563373679106722,0,0,0,0,0,0.505524445014783,0.45673551887624,0,0.445326417194474,0.173485326766136,0.304465478312141,0.691846491768175,0.753613202763113,0.940709657085638,0,0,2.4581890676385,0.884610551949874,0.647067399789637,0.883366073841574,0.484875253135222,0,14.3462590535658,10.0534419270458,0,0,0,0,22.3188052713186,11.8950156732843,5.27748278874031,8.16974304903699,6.39288643325826,15.9996794310861,9.24775199486219,1.01839363850316,0.248813941220186,0.252722758433675,1.47309299120532,1.56144531555244,2.29902104433473,5.58192602396583,4.37043971723574,4.42237244483631,3.97152532883034,3.37326208415024,2.06962696591213,0.431135985865684,0.378212160335639,0.527853372491847,1.7535658594206,0.834141747676794,1.0447564995665,1.4404749548556,0,0,0,0,1.24275463521301,0,0.180062061461015,0.710234206755631,0,0.462801338662135,0.232533944750408,0,0,0,0.492502392237286,0.324275238183423,0,0.878200461164203,0.268412837520744,5.88811855979556,3.19004298375782,0.330418782983798,0,0.213288250535234,0.464473343720877,0.644337306610467,0.403367049246685,0,0.190225626112559,0.474529061544512,0.164698954724011,0,0.596869416123452,0.19496408711912,0,0,0,0.948339504765408,0.571242563048644,1.1270773567308,0.814605311381257,0.193952487167626,0.140271639780637,0.126473074248515,0,0,0,0,0.166845105716094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0.162964976442026,0.169745085775188,0,0.167506257441816,0.476087281772027,0,0.315270288212382,0.44292937929755,0.318909537314974,0.655453258862952,0,0.433947175744535,0,0,0.491764273019036,1.93155722413313,17.8211154886449,14.6514608240254,0,3.28212205365685,0.315508219416257,1.95219372148319,3.01592756825919,2.38968797952552,2.67358408898873,0.849229592366497,3.23848561339915,1.16902343164525,0.395287777946524,6.10510501201433,1.27746076687442,0.890328018336276,1.62886959353576,0.989820737835213,1.32745138339963,0.485561272309963,0,0.377210159511796,0.590603785761546,1.53717573971964,0.775284879504663,0.727067458955011,0.712994756769443,0.316036757935816,1.05418608574999,1.03135543248187,1.02131881726136,1.98067203434441,0.905510786479282,1.28602221018955,1.24138163549592,0.891844088010353,1.31639216481697,0.913394847343798,0.23467170806371,0,0.220528398054962,6.10079135883476,2.42196640043858,0.965006798850494,1.19372344003136,0.656563598980245,0,20.9530591271876,0,0.619160603889667,0.370389054739423,0,0.27338845544205,0,0,0,0,0,0.949007980743406,0.813277868507395,0.108005340821801,0.209088296014469,0.218362563746178,0.539457385539283,0.495920734352016,0,0.90730481304255,0.621339313086926,0,0.598066184175915,0.330916980914195,0.583353565032143,0.516639293910924,0.337912250981556,0.234714477291508,0.13020438484395,0.524296722128554,0.241584120826006,0.288030006257865,0,0,0.308132871494482,0,0,0,0.120195449519969,0,0,0,0,0,0,0,1.36038230169127,0,0.179427713218951,0,0.19318959403219,0.750729901804728,2.74727436400898,1.50057865355346,1.00314420807073,6.7770221114048,5.9842280745933,6.30185064783336,6.70227411140382,4.7955776383945,9.06472676867641,3.37511250115903,7.65546045481175,4.07828168085784,3.10656187051092,3.84013186061454,6.78342284781753,3.92687293234509,5.34834777550247,5.03071590307158,3.8607136774503,6.22290837844523,5.35691148821125,3.53011130550997,3.28506375292937,4.56262739802432,5.47016390019621,3.46473577638565,4.86591158277006,3.33125719942557,1.90517476513229,3.70829843023538,1.54327376370964,3.70877310722976,2.64958056241915,3.77156177623957,2.30718548007139,1.90748951957857,4.50573891560218,5.17601592284318,3.46919892355874,4.024415403201,2.89376682581627,2.30866993537965,4.48913817326191,2.49133538060766,1.97008964751127,2.86461730218783,2.94379998253335,2.89359916471712,4.99621155875892,2.33931608445408,3.00819475667618,2.29545998482612,2.20591419119516,1.62307484934295 | |||
|short_description=p2@Nova1 | |||
}} |
Revision as of 22:52, 12 September 2013
Short description: | p2@Nova1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Nova1_5end |
Coexpression cluster: | MCL_coexpression_mm9:87 |
Association with transcript: | -207bp_to_ENSMUST00000021438, NM_021361, uc007nmd.2, uc007nme.2_5end |
EntrezGene: | Nova1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.01e-17 | 23 |
neuroblast (sensu Vertebrata) | 5.01e-17 | 23 |
neuron | 8.55e-15 | 33 |
neuronal stem cell | 8.55e-15 | 33 |
neuroblast | 8.55e-15 | 33 |
electrically signaling cell | 8.55e-15 | 33 |
neural cell | 1.44e-12 | 43 |
ectodermal cell | 5.24e-12 | 44 |
neurectodermal cell | 5.24e-12 | 44 |
electrically responsive cell | 8.13e-11 | 39 |
electrically active cell | 8.13e-11 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.