FFCP PHASE1:Mm9::chr4:126430954..126430973,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=26562|HGNC=|MCL_coexpression_id=1|UniProt=|association_with_transcript=-272bp_to_ENSMUST00000127079_5end|description=CAGE_peak_5_at_Ncdn_5end|id=chr4:126430954..126430973,-|ontology_enrichment_celltype=CL:0000117!8.41e-12!23;CL:0000337!8.41e-12!23;CL:0000540!9.31e-11!33;CL:0000047!9.31e-11!33;CL:0000031!9.31e-11!33;CL:0000404!9.31e-11!33;CL:0002319!2.49e-10!43;CL:0000221!4.46e-10!44;CL:0000133!4.46e-10!44;CL:0000393!1.84e-08!39;CL:0000211!1.84e-08!39;CL:0000055!7.73e-08!50|ontology_enrichment_celltype_v019_2=CL:0000117,4.05e-17,23;CL:0000337,4.05e-17,23;CL:0000540,6.01e-15,33;CL:0000047,6.01e-15,33;CL:0000031,6.01e-15,33;CL:0000404,6.01e-15,33;CL:0002319,6.58e-12,43;CL:0000393,1.69e-11,39;CL:0000211,1.69e-11,39;CL:0000221,1.85e-11,44;CL:0000133,1.85e-11,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.32e-23!75;UBERON:0001016!2.32e-23!75;UBERON:0001017!4.53e-23!73;UBERON:0005743!4.53e-23!73;UBERON:0001049!8.31e-21!52;UBERON:0005068!8.31e-21!52;UBERON:0006241!8.31e-21!52;UBERON:0007135!8.31e-21!52;UBERON:0004121!4.36e-20!102;UBERON:0000924!4.36e-20!102;UBERON:0006601!4.36e-20!102;UBERON:0000955!8.38e-20!50;UBERON:0006238!8.38e-20!50;UBERON:0000033!8.97e-20!63;UBERON:0002346!2.95e-19!71;UBERON:0003075!2.95e-19!71;UBERON:0007284!2.95e-19!71;UBERON:0002616!4.25e-19!49;UBERON:0002020!7.16e-18!34;UBERON:0003056!2.02e-15!49;UBERON:0003080!2.42e-15!40;UBERON:0002791!6.86e-15!29;UBERON:0003528!6.86e-15!29;UBERON:0001893!6.86e-15!29;UBERON:0002780!1.10e-14!39;UBERON:0001890!1.10e-14!39;UBERON:0006240!1.10e-14!39;UBERON:0007811!1.13e-10!86;UBERON:0000956!1.39e-10!21;UBERON:0001869!1.39e-10!21;UBERON:0000203!1.39e-10!21;UBERON:0000153!5.15e-10!94;UBERON:0002619!5.13e-09!17;UBERON:0002021!1.98e-07!10;UBERON:0000411!1.98e-07!10;UBERON:0001950!1.98e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,9.40e-33,54;UBERON:0001017,5.31e-32,73;UBERON:0001016,1.04e-30,75;UBERON:0001049,2.73e-30,52;UBERON:0005068,2.73e-30,52;UBERON:0006241,2.73e-30,52;UBERON:0007135,2.73e-30,52;UBERON:0002346,4.19e-30,64;UBERON:0003075,4.19e-30,64;UBERON:0007284,4.19e-30,64;UBERON:0002020,3.58e-29,34;UBERON:0004121,3.66e-26,95;UBERON:0000924,3.66e-26,95;UBERON:0006601,3.66e-26,95;UBERON:0000955,5.34e-25,47;UBERON:0006238,5.34e-25,47;UBERON:0010371,1.55e-24,73;UBERON:0002616,8.37e-24,46;UBERON:0003528,1.21e-23,29;UBERON:0002791,1.21e-23,29;UBERON:0001893,1.21e-23,29;UBERON:0003056,1.14e-21,49;UBERON:0003080,2.25e-21,40;UBERON:0002780,3.18e-20,39;UBERON:0001890,3.18e-20,39;UBERON:0006240,3.18e-20,39;UBERON:0010314,1.87e-16,92;UBERON:0000956,1.08e-15,21;UBERON:0001869,1.08e-15,21;UBERON:0000203,1.08e-15,21;UBERON:0002619,5.17e-14,17;UBERON:0002021,1.34e-12,10;UBERON:0000411,1.34e-12,10;UBERON:0001950,1.34e-12,10;UBERON:0003076,2.58e-09,12;UBERON:0003057,2.58e-09,12;UBERON:0002420,3.52e-09,8;UBERON:0007245,3.52e-09,8;UBERON:0010009,3.52e-09,8;UBERON:0010011,3.52e-09,8;UBERON:0000454,3.52e-09,8;UBERON:0000025,4.56e-08,114;UBERON:0002240,8.22e-08,6;UBERON:0005174,8.22e-08,6;UBERON:0001137,8.22e-08,6;UBERON:0004111,3.02e-07,122|phase1_expression=0.640595388419176,0.697950815278722,0,0,0.500895729946347,0.671517087647559,0.467225281191051,0.129123323441576,0.140788722151667,0.234064526321993,0.171217968225505,0.239316476986009,0.342401459862411,0,0,0.404950534779652,0,0.315462165358238,0,0,1.10556277196391,0.695036658406197,0.261199789138935,1.75991665072747,0.91763712426868,1.14846392823004,0.86152399231815,0.646413698057667,1.14014051673824,0,0.665191531965914,0.635030673459631,0,0,0.288851619751275,0.332469290716985,0.204169356262369,0,0,0,0,0,0,0.503587271902309,0.202753862439029,0.367093504323363,3.9119567217402,0.436050312760893,1.09843091367236,0.388859798148567,0.419959264876088,0,0.167782606057736,0,0,0.257259436035947,0.286533439938757,0.515672092277442,2.22548106945558,1.5869729378161,0.633831403506179,1.0165335962074,1.77858959222228,1.7997994345628,0,2.8419204597844,0.898800331555214,0.768436610643109,0.829516898467821,1.62007125998029,1.47227472945967,4.28476476605705,5.52171352379034,1.83736198822431,1.24599112323707,0.919218786610021,4.40463523997555,5.87361755191863,5.68344173048101,2.1101806036831,2.37867873366265,2.08365348222704,4.74611098302348,1.68828783009504,5.34793867218835,2.35702868378934,3.55929201997757,3.54158947068071,0.984440513331393,0.604572480854284,0,0,0,0,0.649776417447669,0,0.280888840263504,0.511290967734173,0.259786004602869,1.41335829804136,0.422530259330042,1.28326477414318,0,0,0,0.506719730950197,0,0.22836775943812,0.517875767294343,0.29688427812965,0.520455980298408,0.304465478312141,0.691846491768175,0.452167921657868,0.705532242814229,0,0,0.433798070759735,0,0.323533699894818,0.220841518460394,0,0,0.585561594023094,1.8850203613211,1.27728527604296,0.11981512450592,0,0.635351135365324,5.99162557619291,3.20250421973039,2.63874139437015,6.08385120672968,3.83573185995496,4.57133698031032,5.67844420737152,0.712875546952214,0.12440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| ||
|EntrezGene=26562 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt= | |||
|association_with_transcript=-272bp_to_ENSMUST00000127079_5end | |||
|description=CAGE_peak_5_at_Ncdn_5end | |||
|id=chr4:126430954..126430973,- | |||
|ontology_enrichment_celltype=CL:0000117!8.41e-12!23;CL:0000337!8.41e-12!23;CL:0000540!9.31e-11!33;CL:0000047!9.31e-11!33;CL:0000031!9.31e-11!33;CL:0000404!9.31e-11!33;CL:0002319!2.49e-10!43;CL:0000221!4.46e-10!44;CL:0000133!4.46e-10!44;CL:0000393!1.84e-08!39;CL:0000211!1.84e-08!39;CL:0000055!7.73e-08!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.05e-17,23;CL:0000337,4.05e-17,23;CL:0000540,6.01e-15,33;CL:0000047,6.01e-15,33;CL:0000031,6.01e-15,33;CL:0000404,6.01e-15,33;CL:0002319,6.58e-12,43;CL:0000393,1.69e-11,39;CL:0000211,1.69e-11,39;CL:0000221,1.85e-11,44;CL:0000133,1.85e-11,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.32e-23!75;UBERON:0001016!2.32e-23!75;UBERON:0001017!4.53e-23!73;UBERON:0005743!4.53e-23!73;UBERON:0001049!8.31e-21!52;UBERON:0005068!8.31e-21!52;UBERON:0006241!8.31e-21!52;UBERON:0007135!8.31e-21!52;UBERON:0004121!4.36e-20!102;UBERON:0000924!4.36e-20!102;UBERON:0006601!4.36e-20!102;UBERON:0000955!8.38e-20!50;UBERON:0006238!8.38e-20!50;UBERON:0000033!8.97e-20!63;UBERON:0002346!2.95e-19!71;UBERON:0003075!2.95e-19!71;UBERON:0007284!2.95e-19!71;UBERON:0002616!4.25e-19!49;UBERON:0002020!7.16e-18!34;UBERON:0003056!2.02e-15!49;UBERON:0003080!2.42e-15!40;UBERON:0002791!6.86e-15!29;UBERON:0003528!6.86e-15!29;UBERON:0001893!6.86e-15!29;UBERON:0002780!1.10e-14!39;UBERON:0001890!1.10e-14!39;UBERON:0006240!1.10e-14!39;UBERON:0007811!1.13e-10!86;UBERON:0000956!1.39e-10!21;UBERON:0001869!1.39e-10!21;UBERON:0000203!1.39e-10!21;UBERON:0000153!5.15e-10!94;UBERON:0002619!5.13e-09!17;UBERON:0002021!1.98e-07!10;UBERON:0000411!1.98e-07!10;UBERON:0001950!1.98e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,9.40e-33,54;UBERON:0001017,5.31e-32,73;UBERON:0001016,1.04e-30,75;UBERON:0001049,2.73e-30,52;UBERON:0005068,2.73e-30,52;UBERON:0006241,2.73e-30,52;UBERON:0007135,2.73e-30,52;UBERON:0002346,4.19e-30,64;UBERON:0003075,4.19e-30,64;UBERON:0007284,4.19e-30,64;UBERON:0002020,3.58e-29,34;UBERON:0004121,3.66e-26,95;UBERON:0000924,3.66e-26,95;UBERON:0006601,3.66e-26,95;UBERON:0000955,5.34e-25,47;UBERON:0006238,5.34e-25,47;UBERON:0010371,1.55e-24,73;UBERON:0002616,8.37e-24,46;UBERON:0003528,1.21e-23,29;UBERON:0002791,1.21e-23,29;UBERON:0001893,1.21e-23,29;UBERON:0003056,1.14e-21,49;UBERON:0003080,2.25e-21,40;UBERON:0002780,3.18e-20,39;UBERON:0001890,3.18e-20,39;UBERON:0006240,3.18e-20,39;UBERON:0010314,1.87e-16,92;UBERON:0000956,1.08e-15,21;UBERON:0001869,1.08e-15,21;UBERON:0000203,1.08e-15,21;UBERON:0002619,5.17e-14,17;UBERON:0002021,1.34e-12,10;UBERON:0000411,1.34e-12,10;UBERON:0001950,1.34e-12,10;UBERON:0003076,2.58e-09,12;UBERON:0003057,2.58e-09,12;UBERON:0002420,3.52e-09,8;UBERON:0007245,3.52e-09,8;UBERON:0010009,3.52e-09,8;UBERON:0010011,3.52e-09,8;UBERON:0000454,3.52e-09,8;UBERON:0000025,4.56e-08,114;UBERON:0002240,8.22e-08,6;UBERON:0005174,8.22e-08,6;UBERON:0001137,8.22e-08,6;UBERON:0004111,3.02e-07,122 | |||
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| |||
|short_description=p5@Ncdn | |||
}} |
Revision as of 03:47, 14 September 2013
Short description: | p5@Ncdn |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Ncdn_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -272bp_to_ENSMUST00000127079_5end |
EntrezGene: | Ncdn |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.05e-17 | 23 |
neuroblast (sensu Vertebrata) | 4.05e-17 | 23 |
neuron | 6.01e-15 | 33 |
neuronal stem cell | 6.01e-15 | 33 |
neuroblast | 6.01e-15 | 33 |
electrically signaling cell | 6.01e-15 | 33 |
neural cell | 6.58e-12 | 43 |
electrically responsive cell | 1.69e-11 | 39 |
electrically active cell | 1.69e-11 | 39 |
ectodermal cell | 1.85e-11 | 44 |
neurectodermal cell | 1.85e-11 | 44 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.