FFCP PHASE1:Mm9::chr7:51639468..51639516,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20981|HGNC=|MCL_coexpression_id=20|UniProt=G3X9Y1,O35681|association_with_transcript=0bp_to_ENSMUST00000118962,ENSMUST00000132399,NM_001114116,NM_016663,uc009gph.2,uc009gpi.2_5end|description=CAGE_peak_1_at_Syt3_5end|id=chr7:51639468..51639516,+|ontology_enrichment_celltype=CL:0000117!1.38e-12!23;CL:0000337!1.38e-12!23;CL:0000540!8.63e-09!33;CL:0000047!8.63e-09!33;CL:0000031!8.63e-09!33;CL:0000404!8.63e-09!33;CL:0000221!5.48e-07!44;CL:0000133!5.48e-07!44;CL:0002319!9.99e-07!43|ontology_enrichment_celltype_v019_2=CL:0000117,4.16e-18,23;CL:0000337,4.16e-18,23;CL:0000540,4.25e-10,33;CL:0000047,4.25e-10,33;CL:0000031,4.25e-10,33;CL:0000404,4.25e-10,33;CL:0000221,2.02e-08,44;CL:0000133,2.02e-08,44;CL:0002319,4.75e-08,43;CL:0000393,2.13e-07,39;CL:0000211,2.13e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!4.28e-24!52;UBERON:0005068!4.28e-24!52;UBERON:0006241!4.28e-24!52;UBERON:0007135!4.28e-24!52;UBERON:0000033!5.43e-23!63;UBERON:0001017!6.44e-23!73;UBERON:0005743!6.44e-23!73;UBERON:0000955!1.24e-22!50;UBERON:0006238!1.24e-22!50;UBERON:0002346!3.88e-22!71;UBERON:0003075!3.88e-22!71;UBERON:0007284!3.88e-22!71;UBERON:0002616!4.37e-22!49;UBERON:0000073!1.86e-21!75;UBERON:0001016!1.86e-21!75;UBERON:0004121!4.48e-21!102;UBERON:0000924!4.48e-21!102;UBERON:0006601!4.48e-21!102;UBERON:0003080!1.95e-18!40;UBERON:0002020!2.20e-18!34;UBERON:0003056!2.57e-18!49;UBERON:0002780!1.03e-17!39;UBERON:0001890!1.03e-17!39;UBERON:0006240!1.03e-17!39;UBERON:0002791!3.02e-15!29;UBERON:0003528!3.02e-15!29;UBERON:0001893!3.02e-15!29;UBERON:0004111!7.83e-12!122;UBERON:0000956!5.27e-11!21;UBERON:0001869!5.27e-11!21;UBERON:0000203!5.27e-11!21;UBERON:0007811!3.89e-10!86;UBERON:0000153!4.46e-10!94;UBERON:0000025!8.10e-10!114;UBERON:0002619!4.81e-09!17;UBERON:0000475!1.74e-08!200|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.55e-35,54;UBERON:0001049,2.49e-33,52;UBERON:0005068,2.49e-33,52;UBERON:0006241,2.49e-33,52;UBERON:0007135,2.49e-33,52;UBERON:0001017,3.00e-29,73;UBERON:0000955,4.14e-28,47;UBERON:0006238,4.14e-28,47;UBERON:0001016,6.44e-28,75;UBERON:0002616,2.59e-27,46;UBERON:0002020,7.92e-27,34;UBERON:0002346,1.34e-26,64;UBERON:0003075,1.34e-26,64;UBERON:0007284,1.34e-26,64;UBERON:0003080,4.93e-25,40;UBERON:0002780,5.76e-24,39;UBERON:0001890,5.76e-24,39;UBERON:0006240,5.76e-24,39;UBERON:0010371,3.45e-23,73;UBERON:0004121,9.82e-23,95;UBERON:0000924,9.82e-23,95;UBERON:0006601,9.82e-23,95;UBERON:0003528,4.16e-22,29;UBERON:0002791,4.16e-22,29;UBERON:0001893,4.16e-22,29;UBERON:0003056,9.99e-21,49;UBERON:0010314,3.92e-17,92;UBERON:0000956,9.89e-16,21;UBERON:0001869,9.89e-16,21;UBERON:0000203,9.89e-16,21;UBERON:0004111,8.43e-15,122;UBERON:0002619,8.61e-13,17;UBERON:0000025,1.26e-12,114;UBERON:0002021,3.02e-09,10;UBERON:0000411,3.02e-09,10;UBERON:0001950,3.02e-09,10;UBERON:0003076,1.65e-08,12;UBERON:0003057,1.65e-08,12;UBERON:0002420,1.61e-07,8;UBERON:0007245,1.61e-07,8;UBERON:0010009,1.61e-07,8;UBERON:0010011,1.61e-07,8;UBERON:0000454,1.61e-07,8;UBERON:0002240,5.92e-07,6;UBERON:0005174,5.92e-07,6;UBERON:0001137,5.92e-07,6|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0.70219357896598,0,0,0,0,0,0,0,0,0,0,3.99703463710028,0,0.261199789138935,0,0.45881856213434,0,0,0,0,0,0,0,0,0,0.288851619751275,0.332469290716985,0.612508068787107,0,0,0,0,0,0,0.251793635951155,0.202753862439029,0,0,0.65407546914134,1.75748946187577,1.74986909166855,0.279972843250725,0,0.167782606057736,0,0,0,0,0,3.43937983461316,2.64495489636016,6.33831403506179,0,0.889294796111139,1.3498495759221,0,0,0.299600110518405,1.15265491596466,2.38486108309499,3.91517221161903,4.41682418837902,19.4242669394586,12.3686382932904,1.34739879136449,1.62937300731002,1.83843757322004,9.91042928994498,14.5563565417114,12.4421291937557,2.63772575460388,2.01272815925301,2.08365348222704,20.6595419261022,14.069065250792,10.3902808488231,6.48182888042069,9.11178757114259,5.96478226640962,0.075726193333184,0,1.15945795480671,0.860423876981386,0,2.15881276655127,5.19821133958135,1.34408066129201,1.82577746171277,0.170430322578058,0,0,1.69012103732017,0,0,0,0,0,0,1.48439043634778,0.517875767294343,2.67195850316685,0.346970653532272,0,0.230615497256059,0.150722640552623,0.470354828542819,1.88499886994513,0,2.60278842455841,0,0.161766849947409,0,0,0,11.1256702864388,15.4990563041957,0.510914110417183,0,0,0.254140454146129,19.7723644014366,9.60751265919116,5.90575454930463,14.6012428961512,11.7629110371952,16.6230435647648,14.4394724130304,0.305518091550949,0.622034853050465,1.76905930903572,4.8401626853889,0.520481771850815,0.689706313300419,0.360124259610698,0.30140963567143,0.748401490664606,0.640568601424249,0.937017245597288,5.43277078551933,0.431135985865684,1.70195472151037,0.351902248327898,0.43839146485515,0.556094498451196,0.696504333044333,0.205782136407943,0.59710280045548,0,0,0,0,0.234526059981096,0,0,0.393528463494808,0,0.232533944750408,0.268273401399619,0.116765342367169,0.329119699826961,0.98500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| ||
|EntrezGene=20981 | |||
|HGNC= | |||
|MCL_coexpression_id=20 | |||
|UniProt=G3X9Y1,O35681 | |||
|association_with_transcript=0bp_to_ENSMUST00000118962,ENSMUST00000132399,NM_001114116,NM_016663,uc009gph.2,uc009gpi.2_5end | |||
|description=CAGE_peak_1_at_Syt3_5end | |||
|id=chr7:51639468..51639516,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.38e-12!23;CL:0000337!1.38e-12!23;CL:0000540!8.63e-09!33;CL:0000047!8.63e-09!33;CL:0000031!8.63e-09!33;CL:0000404!8.63e-09!33;CL:0000221!5.48e-07!44;CL:0000133!5.48e-07!44;CL:0002319!9.99e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.16e-18,23;CL:0000337,4.16e-18,23;CL:0000540,4.25e-10,33;CL:0000047,4.25e-10,33;CL:0000031,4.25e-10,33;CL:0000404,4.25e-10,33;CL:0000221,2.02e-08,44;CL:0000133,2.02e-08,44;CL:0002319,4.75e-08,43;CL:0000393,2.13e-07,39;CL:0000211,2.13e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!4.28e-24!52;UBERON:0005068!4.28e-24!52;UBERON:0006241!4.28e-24!52;UBERON:0007135!4.28e-24!52;UBERON:0000033!5.43e-23!63;UBERON:0001017!6.44e-23!73;UBERON:0005743!6.44e-23!73;UBERON:0000955!1.24e-22!50;UBERON:0006238!1.24e-22!50;UBERON:0002346!3.88e-22!71;UBERON:0003075!3.88e-22!71;UBERON:0007284!3.88e-22!71;UBERON:0002616!4.37e-22!49;UBERON:0000073!1.86e-21!75;UBERON:0001016!1.86e-21!75;UBERON:0004121!4.48e-21!102;UBERON:0000924!4.48e-21!102;UBERON:0006601!4.48e-21!102;UBERON:0003080!1.95e-18!40;UBERON:0002020!2.20e-18!34;UBERON:0003056!2.57e-18!49;UBERON:0002780!1.03e-17!39;UBERON:0001890!1.03e-17!39;UBERON:0006240!1.03e-17!39;UBERON:0002791!3.02e-15!29;UBERON:0003528!3.02e-15!29;UBERON:0001893!3.02e-15!29;UBERON:0004111!7.83e-12!122;UBERON:0000956!5.27e-11!21;UBERON:0001869!5.27e-11!21;UBERON:0000203!5.27e-11!21;UBERON:0007811!3.89e-10!86;UBERON:0000153!4.46e-10!94;UBERON:0000025!8.10e-10!114;UBERON:0002619!4.81e-09!17;UBERON:0000475!1.74e-08!200 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.55e-35,54;UBERON:0001049,2.49e-33,52;UBERON:0005068,2.49e-33,52;UBERON:0006241,2.49e-33,52;UBERON:0007135,2.49e-33,52;UBERON:0001017,3.00e-29,73;UBERON:0000955,4.14e-28,47;UBERON:0006238,4.14e-28,47;UBERON:0001016,6.44e-28,75;UBERON:0002616,2.59e-27,46;UBERON:0002020,7.92e-27,34;UBERON:0002346,1.34e-26,64;UBERON:0003075,1.34e-26,64;UBERON:0007284,1.34e-26,64;UBERON:0003080,4.93e-25,40;UBERON:0002780,5.76e-24,39;UBERON:0001890,5.76e-24,39;UBERON:0006240,5.76e-24,39;UBERON:0010371,3.45e-23,73;UBERON:0004121,9.82e-23,95;UBERON:0000924,9.82e-23,95;UBERON:0006601,9.82e-23,95;UBERON:0003528,4.16e-22,29;UBERON:0002791,4.16e-22,29;UBERON:0001893,4.16e-22,29;UBERON:0003056,9.99e-21,49;UBERON:0010314,3.92e-17,92;UBERON:0000956,9.89e-16,21;UBERON:0001869,9.89e-16,21;UBERON:0000203,9.89e-16,21;UBERON:0004111,8.43e-15,122;UBERON:0002619,8.61e-13,17;UBERON:0000025,1.26e-12,114;UBERON:0002021,3.02e-09,10;UBERON:0000411,3.02e-09,10;UBERON:0001950,3.02e-09,10;UBERON:0003076,1.65e-08,12;UBERON:0003057,1.65e-08,12;UBERON:0002420,1.61e-07,8;UBERON:0007245,1.61e-07,8;UBERON:0010009,1.61e-07,8;UBERON:0010011,1.61e-07,8;UBERON:0000454,1.61e-07,8;UBERON:0002240,5.92e-07,6;UBERON:0005174,5.92e-07,6;UBERON:0001137,5.92e-07,6 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0.70219357896598,0,0,0,0,0,0,0,0,0,0,3.99703463710028,0,0.261199789138935,0,0.45881856213434,0,0,0,0,0,0,0,0,0,0.288851619751275,0.332469290716985,0.612508068787107,0,0,0,0,0,0,0.251793635951155,0.202753862439029,0,0,0.65407546914134,1.75748946187577,1.74986909166855,0.279972843250725,0,0.167782606057736,0,0,0,0,0,3.43937983461316,2.64495489636016,6.33831403506179,0,0.889294796111139,1.3498495759221,0,0,0.299600110518405,1.15265491596466,2.38486108309499,3.91517221161903,4.41682418837902,19.4242669394586,12.3686382932904,1.34739879136449,1.62937300731002,1.83843757322004,9.91042928994498,14.5563565417114,12.4421291937557,2.63772575460388,2.01272815925301,2.08365348222704,20.6595419261022,14.069065250792,10.3902808488231,6.48182888042069,9.11178757114259,5.96478226640962,0.075726193333184,0,1.15945795480671,0.860423876981386,0,2.15881276655127,5.19821133958135,1.34408066129201,1.82577746171277,0.170430322578058,0,0,1.69012103732017,0,0,0,0,0,0,1.48439043634778,0.517875767294343,2.67195850316685,0.346970653532272,0,0.230615497256059,0.150722640552623,0.470354828542819,1.88499886994513,0,2.60278842455841,0,0.161766849947409,0,0,0,11.1256702864388,15.4990563041957,0.510914110417183,0,0,0.254140454146129,19.7723644014366,9.60751265919116,5.90575454930463,14.6012428961512,11.7629110371952,16.6230435647648,14.4394724130304,0.305518091550949,0.622034853050465,1.76905930903572,4.8401626853889,0.520481771850815,0.689706313300419,0.360124259610698,0.30140963567143,0.748401490664606,0.640568601424249,0.937017245597288,5.43277078551933,0.431135985865684,1.70195472151037,0.351902248327898,0.43839146485515,0.556094498451196,0.696504333044333,0.205782136407943,0.59710280045548,0,0,0,0,0.234526059981096,0,0,0.393528463494808,0,0.232533944750408,0.268273401399619,0.116765342367169,0.329119699826961,0.985004784474571,1.37816976227955,0.584799949701329,0.658650345873152,1.47627060636409,14.5100064509248,5.65975368086064,0,0,0.213288250535234,0.464473343720877,0.38660238396628,0.80673409849337,0,0,0.474529061544512,0.164698954724011,1.25667604400135,0.397912944082302,0.38992817423824,0,0.216138049874694,0.398282546508734,0.569003702859245,0.228497025219458,0,0.407302655690628,0.387904974335251,0.49095073923223,1.01178459398812,2.06654207171443,1.72698600625512,1.97435462274881,2.07516838961004,0,0.196558995113203,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0.179397413521912,1.4473305640901,0.739012760666419,0.37898282354097,0.814824882210129,0.339490171550376,0.469380496577004,0,0.714130922658041,0,0.945810864637146,0.44292937929755,0.478364305972461,0.81931657357869,0.863424909329478,1.15719246865209,0,0,0,0.551873492609465,20.2293743384618,20.1604100938589,0,3.02965112645248,0.94652465824877,0.390438744296638,0.646270193198397,0,0.222798674082394,0.849229592366497,0.404810701674894,0.292255857911312,0,4.81981974632711,0.567760340833074,0.712262414669021,0.162886959353576,0.989820737835213,5.30980553359851,0.485561272309963,0.302323556964751,0.565815239267694,0.885905678642318,1.22974059177571,0.258428293168221,1.09060118843252,1.42598951353889,1.8962205476149,6.32511651449993,3.09406629744561,4.08527526904546,0.540183282093931,0.517434735131018,0.428674070063185,1.77340233642274,2.31879462882692,1.64549020602121,3.04464949114599,0,0,2.20528398054962,1.81374878235628,0.645857706783622,0.72375509913787,0.954978752025092,0.492422699235184,0,32.2640025498287,0.170870880797853,0.412773735926445,0.185194527369712,0,0.136694227721025,0,0.849892149969277,0.419854356970974,0.414599921413271,0.954670618015114,0.474503990371703,1.01659733563424,0.324016022465404,0,0.655087691238533,0.269728692769641,0.743881101528023,1.30877970992015,0.518459893167171,1.24267862617385,0,0,0.165458490457098,0.388902376688095,0.258319646955462,0.337912250981556,0.117357238645754,0.2604087696879,0.104859344425711,0,0,0.316011120628178,0,0.308132871494482,0,0,0.198681354781265,0,0,0,0.0762068066549998,0.302478555410522,0,0.192423683280659,0.116876902181569,0.680191150845634,0,0,0,2.12508553435409,0.187682475451182,1.09890974560359,1.92931541171159,6.01886524842436,5.64751842617067,3.68260189205742,7.44764167471216,9.10821866421544,4.7955776383945,8.3093328712867,2.70009000092722,8.55610286126019,6.79713613476307,12.9440077937955,0.103787347584177,0.798049746802062,1.02440163452481,1.21553358534147,0.419226325255965,0.183843508450014,1.33348036680969,0.618105171716683,1.28367683836726,0.505394423527595,0.50695859978048,0.377252682772152,1.03005658216871,0.704276676453562,0.918967503289812,0.476293691283074,1.0429589335037,0.964546102318525,0.824171801606613,0.735994600671987,0.342869252385415,0.887379030796687,0.476872379894642,0.872078499793971,1.59985946706062,1.01537529470012,0.914639864363863,0.526139422875686,1.08643291076689,0,0.237270036248348,1.28055827088233,0,0.309873682371932,1.15743966588685,2.74791635731741,1.40358965067245,0.859484216193193,1.14772999241306,0.661774257358546,0.695603506861264 | |||
|short_description=p1@Syt3 | |||
}} |
Revision as of 13:35, 14 September 2013
Short description: | p1@Syt3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Syt3_5end |
Coexpression cluster: | MCL_coexpression_mm9:20 |
Association with transcript: | 0bp_to_ENSMUST00000118962, ENSMUST00000132399, NM_001114116, NM_016663, uc009gph.2, uc009gpi.2_5end |
EntrezGene: | Syt3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.16e-18 | 23 |
neuroblast (sensu Vertebrata) | 4.16e-18 | 23 |
neuron | 4.25e-10 | 33 |
neuronal stem cell | 4.25e-10 | 33 |
neuroblast | 4.25e-10 | 33 |
electrically signaling cell | 4.25e-10 | 33 |
ectodermal cell | 2.02e-08 | 44 |
neurectodermal cell | 2.02e-08 | 44 |
neural cell | 4.75e-08 | 43 |
electrically responsive cell | 2.13e-07 | 39 |
electrically active cell | 2.13e-07 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.