FFCP PHASE1:Mm9::chr7:58879965..58879978,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=2470|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr7:58879965..58879978,+|id=chr7:58879965..58879978,+|ontology_enrichment_celltype=CL:0000117!1.29e-24!23;CL:0000337!1.29e-24!23;CL:0000540!1.28e-16!33;CL:0000047!1.28e-16!33;CL:0000031!1.28e-16!33;CL:0000404!1.28e-16!33;CL:0000221!4.37e-14!44;CL:0000133!4.37e-14!44;CL:0002319!2.13e-13!43;CL:0000393!4.76e-13!39;CL:0000211!4.76e-13!39;CL:0000055!1.44e-10!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.00e-47,23;CL:0000337,1.00e-47,23;CL:0000540,1.50e-32,33;CL:0000047,1.50e-32,33;CL:0000031,1.50e-32,33;CL:0000404,1.50e-32,33;CL:0000393,3.59e-27,39;CL:0000211,3.59e-27,39;CL:0002319,2.05e-24,43;CL:0000221,8.35e-24,44;CL:0000133,8.35e-24,44;CL:0002613,3.66e-15,3;CL:0000120,8.53e-15,3;CL:0002614,2.42e-14,3;CL:0002321,5.03e-14,70;CL:0002610,8.23e-14,3;CL:0000723,3.48e-10,91;CL:0000048,3.48e-10,91;CL:0000034,2.17e-09,97;CL:0002609,8.12e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!5.65e-17!75;UBERON:0001016!5.65e-17!75;UBERON:0000033!4.79e-16!63;UBERON:0001017!1.11e-15!73;UBERON:0005743!1.11e-15!73;UBERON:0002616!1.24e-14!49;UBERON:0001049!2.31e-14!52;UBERON:0005068!2.31e-14!52;UBERON:0006241!2.31e-14!52;UBERON:0007135!2.31e-14!52;UBERON:0000955!3.50e-14!50;UBERON:0006238!3.50e-14!50;UBERON:0004121!4.06e-14!102;UBERON:0000924!4.06e-14!102;UBERON:0006601!4.06e-14!102;UBERON:0003056!1.12e-12!49;UBERON:0002346!3.24e-12!71;UBERON:0003075!3.24e-12!71;UBERON:0007284!3.24e-12!71;UBERON:0003080!1.79e-11!40;UBERON:0002780!1.69e-10!39;UBERON:0001890!1.69e-10!39;UBERON:0006240!1.69e-10!39;UBERON:0002020!2.13e-10!34;UBERON:0002298!7.98e-10!6;UBERON:0007811!2.50e-09!86;UBERON:0002791!1.06e-08!29;UBERON:0003528!1.06e-08!29;UBERON:0001893!1.06e-08!29;UBERON:0000153!8.24e-08!94;UBERON:0002420!1.42e-07!8;UBERON:0007245!1.42e-07!8;UBERON:0010009!1.42e-07!8;UBERON:0010011!1.42e-07!8;UBERON:0000454!1.42e-07!8;UBERON:0002950!2.66e-07!4;UBERON:0001891!2.66e-07!4;UBERON:0009616!2.66e-07!4|ontology_enrichment_uberon_v019_2=UBERON:0002420,8.63e-21,8;UBERON:0007245,8.63e-21,8;UBERON:0010009,8.63e-21,8;UBERON:0010011,8.63e-21,8;UBERON:0000454,8.63e-21,8;UBERON:0001017,1.60e-19,73;UBERON:0001016,6.26e-19,75;UBERON:0000073,1.36e-18,54;UBERON:0002950,2.11e-18,4;UBERON:0001891,2.11e-18,4;UBERON:0009616,2.11e-18,4;UBERON:0010286,2.11e-18,4;UBERON:0004121,2.33e-14,95;UBERON:0000924,2.33e-14,95;UBERON:0006601,2.33e-14,95;UBERON:0002038,2.42e-14,3;UBERON:0009663,2.42e-14,3;UBERON:0009661,2.42e-14,3;UBERON:0000125,2.42e-14,3;UBERON:0002308,2.42e-14,3;UBERON:0004684,8.23e-14,3;UBERON:0002275,8.23e-14,3;UBERON:0001049,2.10e-12,52;UBERON:0005068,2.10e-12,52;UBERON:0006241,2.10e-12,52;UBERON:0007135,2.10e-12,52;UBERON:0002616,4.05e-12,46;UBERON:0003080,6.54e-12,40;UBERON:0000955,8.07e-12,47;UBERON:0006238,8.07e-12,47;UBERON:0002020,9.95e-12,34;UBERON:0003528,2.17e-11,29;UBERON:0002791,2.17e-11,29;UBERON:0001893,2.17e-11,29;UBERON:0002780,4.50e-10,39;UBERON:0001890,4.50e-10,39;UBERON:0006240,4.50e-10,39;UBERON:0002346,1.12e-09,64;UBERON:0003075,1.12e-09,64;UBERON:0007284,1.12e-09,64;UBERON:0003056,2.11e-09,49;UBERON:0000369,2.74e-09,5;UBERON:0002435,2.74e-09,5;UBERON:0000204,2.74e-09,5;UBERON:0010082,2.74e-09,5;UBERON:0010371,3.21e-08,73|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.43937983461316,3.70293685490423,2.53532561402472,0,0,0,0,0,0,0,1.03689612308478,1.08004750665353,1.26194976810829,0,0,0.61245399607477,0.670918297127655,0,1.10115880999389,1.78762273319263,1.84327839907492,4.3522474950964,4.02545631850602,3.64639359389732,1.67509799400829,3.37657566019008,2.44477196442896,0.294628585473668,0.569486723196412,1.1183966749518,0.075726193333184,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.64769703345305,0,0,0.173824320192276,0,1.45451631191692,0.324482526135515,0,0,0,0,0,0.229902104433473,0.720248519221397,0.452114453507145,0.340182495756639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308713837137853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.642202359951168,1.17211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0,0,0,0,0.164549020602121,0.304464949114599,0,0,0,0,0,0,0,0,0,0.741701208042039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460325236507177,0,0,0,0,0.675022500231806,0,0,0,0.518936737920883,1.19707462020309,0.341467211508268,0,0.419226325255965,0.183843508450014,0.222246727801615,0.206035057238894,0,0,0,0.188626341386076,0.187283014939765,0.192075457214608,0.0574354689556133,0.476293691283074,0,0.38581844092741,0,0.294397840268795,0,0,0.238436189947321,0,0.282328141245992,0.0846146078916765,0.365855945745545,0,0,0,0.355905054372522,0.394017929502254,0.409231043169689,0.154936841185966,0.192906610981141,0.249810577937946,0.233931608445408,0,0.191288332068843,0,0|short_description=p@chr7:58879965..58879978,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=2470 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr7:58879965..58879978,+ | |||
|id=chr7:58879965..58879978,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.29e-24!23;CL:0000337!1.29e-24!23;CL:0000540!1.28e-16!33;CL:0000047!1.28e-16!33;CL:0000031!1.28e-16!33;CL:0000404!1.28e-16!33;CL:0000221!4.37e-14!44;CL:0000133!4.37e-14!44;CL:0002319!2.13e-13!43;CL:0000393!4.76e-13!39;CL:0000211!4.76e-13!39;CL:0000055!1.44e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.00e-47,23;CL:0000337,1.00e-47,23;CL:0000540,1.50e-32,33;CL:0000047,1.50e-32,33;CL:0000031,1.50e-32,33;CL:0000404,1.50e-32,33;CL:0000393,3.59e-27,39;CL:0000211,3.59e-27,39;CL:0002319,2.05e-24,43;CL:0000221,8.35e-24,44;CL:0000133,8.35e-24,44;CL:0002613,3.66e-15,3;CL:0000120,8.53e-15,3;CL:0002614,2.42e-14,3;CL:0002321,5.03e-14,70;CL:0002610,8.23e-14,3;CL:0000723,3.48e-10,91;CL:0000048,3.48e-10,91;CL:0000034,2.17e-09,97;CL:0002609,8.12e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!5.65e-17!75;UBERON:0001016!5.65e-17!75;UBERON:0000033!4.79e-16!63;UBERON:0001017!1.11e-15!73;UBERON:0005743!1.11e-15!73;UBERON:0002616!1.24e-14!49;UBERON:0001049!2.31e-14!52;UBERON:0005068!2.31e-14!52;UBERON:0006241!2.31e-14!52;UBERON:0007135!2.31e-14!52;UBERON:0000955!3.50e-14!50;UBERON:0006238!3.50e-14!50;UBERON:0004121!4.06e-14!102;UBERON:0000924!4.06e-14!102;UBERON:0006601!4.06e-14!102;UBERON:0003056!1.12e-12!49;UBERON:0002346!3.24e-12!71;UBERON:0003075!3.24e-12!71;UBERON:0007284!3.24e-12!71;UBERON:0003080!1.79e-11!40;UBERON:0002780!1.69e-10!39;UBERON:0001890!1.69e-10!39;UBERON:0006240!1.69e-10!39;UBERON:0002020!2.13e-10!34;UBERON:0002298!7.98e-10!6;UBERON:0007811!2.50e-09!86;UBERON:0002791!1.06e-08!29;UBERON:0003528!1.06e-08!29;UBERON:0001893!1.06e-08!29;UBERON:0000153!8.24e-08!94;UBERON:0002420!1.42e-07!8;UBERON:0007245!1.42e-07!8;UBERON:0010009!1.42e-07!8;UBERON:0010011!1.42e-07!8;UBERON:0000454!1.42e-07!8;UBERON:0002950!2.66e-07!4;UBERON:0001891!2.66e-07!4;UBERON:0009616!2.66e-07!4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002420,8.63e-21,8;UBERON:0007245,8.63e-21,8;UBERON:0010009,8.63e-21,8;UBERON:0010011,8.63e-21,8;UBERON:0000454,8.63e-21,8;UBERON:0001017,1.60e-19,73;UBERON:0001016,6.26e-19,75;UBERON:0000073,1.36e-18,54;UBERON:0002950,2.11e-18,4;UBERON:0001891,2.11e-18,4;UBERON:0009616,2.11e-18,4;UBERON:0010286,2.11e-18,4;UBERON:0004121,2.33e-14,95;UBERON:0000924,2.33e-14,95;UBERON:0006601,2.33e-14,95;UBERON:0002038,2.42e-14,3;UBERON:0009663,2.42e-14,3;UBERON:0009661,2.42e-14,3;UBERON:0000125,2.42e-14,3;UBERON:0002308,2.42e-14,3;UBERON:0004684,8.23e-14,3;UBERON:0002275,8.23e-14,3;UBERON:0001049,2.10e-12,52;UBERON:0005068,2.10e-12,52;UBERON:0006241,2.10e-12,52;UBERON:0007135,2.10e-12,52;UBERON:0002616,4.05e-12,46;UBERON:0003080,6.54e-12,40;UBERON:0000955,8.07e-12,47;UBERON:0006238,8.07e-12,47;UBERON:0002020,9.95e-12,34;UBERON:0003528,2.17e-11,29;UBERON:0002791,2.17e-11,29;UBERON:0001893,2.17e-11,29;UBERON:0002780,4.50e-10,39;UBERON:0001890,4.50e-10,39;UBERON:0006240,4.50e-10,39;UBERON:0002346,1.12e-09,64;UBERON:0003075,1.12e-09,64;UBERON:0007284,1.12e-09,64;UBERON:0003056,2.11e-09,49;UBERON:0000369,2.74e-09,5;UBERON:0002435,2.74e-09,5;UBERON:0000204,2.74e-09,5;UBERON:0010082,2.74e-09,5;UBERON:0010371,3.21e-08,73 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.43937983461316,3.70293685490423,2.53532561402472,0,0,0,0,0,0,0,1.03689612308478,1.08004750665353,1.26194976810829,0,0,0.61245399607477,0.670918297127655,0,1.10115880999389,1.78762273319263,1.84327839907492,4.3522474950964,4.02545631850602,3.64639359389732,1.67509799400829,3.37657566019008,2.44477196442896,0.294628585473668,0.569486723196412,1.1183966749518,0.075726193333184,0.0755715601067855,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.64769703345305,0,0,0.173824320192276,0,1.45451631191692,0.324482526135515,0,0,0,0,0,0.229902104433473,0.720248519221397,0.452114453507145,0.340182495756639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308713837137853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.642202359951168,1.17211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0,0,0,0,0.164549020602121,0.304464949114599,0,0,0,0,0,0,0,0,0,0.741701208042039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460325236507177,0,0,0,0,0.675022500231806,0,0,0,0.518936737920883,1.19707462020309,0.341467211508268,0,0.419226325255965,0.183843508450014,0.222246727801615,0.206035057238894,0,0,0,0.188626341386076,0.187283014939765,0.192075457214608,0.0574354689556133,0.476293691283074,0,0.38581844092741,0,0.294397840268795,0,0,0.238436189947321,0,0.282328141245992,0.0846146078916765,0.365855945745545,0,0,0,0.355905054372522,0.394017929502254,0.409231043169689,0.154936841185966,0.192906610981141,0.249810577937946,0.233931608445408,0,0.191288332068843,0,0 | |||
|short_description=p@chr7:58879965..58879978,+ | |||
}} |
Revision as of 13:56, 14 September 2013
Short description: | p@chr7:58879965..58879978, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr7:58879965..58879978, + |
Coexpression cluster: | MCL_coexpression_mm9:2470 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.00e-47 | 23 |
neuroblast (sensu Vertebrata) | 1.00e-47 | 23 |
neuron | 1.50e-32 | 33 |
neuronal stem cell | 1.50e-32 | 33 |
neuroblast | 1.50e-32 | 33 |
electrically signaling cell | 1.50e-32 | 33 |
electrically responsive cell | 3.59e-27 | 39 |
electrically active cell | 3.59e-27 | 39 |
neural cell | 2.05e-24 | 43 |
ectodermal cell | 8.35e-24 | 44 |
neurectodermal cell | 8.35e-24 | 44 |
striatum neuron | 3.66e-15 | 3 |
granule cell | 8.53e-15 | 3 |
neuron of the substantia nigra | 2.42e-14 | 3 |
embryonic cell | 5.03e-14 | 70 |
raphe nuclei neuron | 8.23e-14 | 3 |
somatic stem cell | 3.48e-10 | 91 |
multi fate stem cell | 3.48e-10 | 91 |
stem cell | 2.17e-09 | 97 |
neuron of cerebral cortex | 8.12e-07 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.