FFCP PHASE1:Mm9::chr7:89319756..89319761,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20408|HGNC=|MCL_coexpression_id=87|UniProt=Q62421,Q497N4,Q9CZV7|association_with_transcript=28bp_to_ENSMUST00000032874,NM_017400,uc009icv.1,uc009icw.1,uc009icx.1,uc012foc.1_5end|description=CAGE_peak_4_at_Sh3gl3_5end|id=chr7:89319756..89319761,+|ontology_enrichment_celltype=CL:0000117!1.48e-22!23;CL:0000337!1.48e-22!23;CL:0000540!3.85e-22!33;CL:0000047!3.85e-22!33;CL:0000031!3.85e-22!33;CL:0000404!3.85e-22!33;CL:0000221!1.51e-19!44;CL:0000133!1.51e-19!44;CL:0002319!1.13e-18!43;CL:0000393!2.40e-17!39;CL:0000211!2.40e-17!39;CL:0000055!1.01e-14!50;CL:0002321!8.55e-09!70;CL:0000220!8.55e-09!70|ontology_enrichment_celltype_v019_2=CL:0000117,5.06e-53,23;CL:0000337,5.06e-53,23;CL:0000540,2.38e-36,33;CL:0000047,2.38e-36,33;CL:0000031,2.38e-36,33;CL:0000404,2.38e-36,33;CL:0000393,1.93e-30,39;CL:0000211,1.93e-30,39;CL:0002319,2.05e-27,43;CL:0000221,9.63e-27,44;CL:0000133,9.63e-27,44;CL:0002321,5.34e-16,70;CL:0000120,1.16e-15,3;CL:0002612,2.28e-15,3;CL:0002614,2.86e-15,3;CL:0002610,4.47e-15,3;CL:0000723,8.88e-12,91;CL:0000048,8.88e-12,91;CL:0002611,1.37e-11,2;CL:0000034,6.63e-11,97;CL:0002613,1.22e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!5.33e-25!75;UBERON:0001016!5.33e-25!75;UBERON:0001017!1.21e-23!73;UBERON:0005743!1.21e-23!73;UBERON:0004121!5.32e-22!102;UBERON:0000924!5.32e-22!102;UBERON:0006601!5.32e-22!102;UBERON:0002020!8.82e-20!34;UBERON:0002346!2.58e-19!71;UBERON:0003075!2.58e-19!71;UBERON:0007284!2.58e-19!71;UBERON:0001049!3.88e-18!52;UBERON:0005068!3.88e-18!52;UBERON:0006241!3.88e-18!52;UBERON:0007135!3.88e-18!52;UBERON:0002616!3.45e-15!49;UBERON:0000955!1.07e-14!50;UBERON:0006238!1.07e-14!50;UBERON:0002791!4.83e-14!29;UBERON:0003528!4.83e-14!29;UBERON:0001893!4.83e-14!29;UBERON:0000033!2.34e-13!63;UBERON:0003080!1.03e-11!40;UBERON:0002780!6.77e-11!39;UBERON:0001890!6.77e-11!39;UBERON:0006240!6.77e-11!39;UBERON:0003056!8.02e-11!49;UBERON:0002240!1.06e-08!6;UBERON:0005174!1.06e-08!6;UBERON:0001137!1.06e-08!6;UBERON:0002420!5.12e-08!8;UBERON:0007245!5.12e-08!8;UBERON:0010009!5.12e-08!8;UBERON:0010011!5.12e-08!8;UBERON:0000454!5.12e-08!8;UBERON:0000956!5.49e-08!21;UBERON:0001869!5.49e-08!21;UBERON:0000203!5.49e-08!21;UBERON:0001948!6.86e-08!5;UBERON:0002315!6.86e-08!5;UBERON:0002298!7.10e-08!6;UBERON:0007811!8.51e-08!86;UBERON:0003076!1.24e-07!12;UBERON:0003057!1.24e-07!12;UBERON:0000153!5.80e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0001948,2.82e-25,5;UBERON:0002315,2.82e-25,5;UBERON:0002240,4.64e-21,6;UBERON:0005174,4.64e-21,6;UBERON:0001137,4.64e-21,6;UBERON:0001017,1.84e-17,73;UBERON:0001016,6.20e-17,75;UBERON:0002020,3.08e-16,34;UBERON:0000073,5.27e-16,54;UBERON:0002420,2.20e-15,8;UBERON:0007245,2.20e-15,8;UBERON:0010009,2.20e-15,8;UBERON:0010011,2.20e-15,8;UBERON:0000454,2.20e-15,8;UBERON:0002257,2.28e-15,3;UBERON:0002038,2.86e-15,3;UBERON:0009663,2.86e-15,3;UBERON:0009661,2.86e-15,3;UBERON:0000125,2.86e-15,3;UBERON:0002308,2.86e-15,3;UBERON:0004684,4.47e-15,3;UBERON:0002275,4.47e-15,3;UBERON:0004121,7.03e-13,95;UBERON:0000924,7.03e-13,95;UBERON:0006601,7.03e-13,95;UBERON:0002950,1.35e-11,4;UBERON:0001891,1.35e-11,4;UBERON:0009616,1.35e-11,4;UBERON:0010286,1.35e-11,4;UBERON:0002256,1.37e-11,2;UBERON:0003076,1.77e-10,12;UBERON:0003057,1.77e-10,12;UBERON:0001049,4.64e-10,52;UBERON:0005068,4.64e-10,52;UBERON:0006241,4.64e-10,52;UBERON:0007135,4.64e-10,52;UBERON:0002346,7.29e-08,64;UBERON:0003075,7.29e-08,64;UBERON:0007284,7.29e-08,64|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194429899074283,0,0,0,0,0,0,0,0,1.01158230429799,1.5869729378161,3.80298842103708,0,0,0,0,0,0,0,0,0.270011876663381,0.210324961351382,3.14216082844184,3.75476519617743,0.489963196859816,0.0958454710182364,0,1.10115880999389,1.53224805702225,1.22885226604995,1.31886287730194,2.28719109006024,0.52091337055676,1.3959149950069,1.68828783009504,1.06958773443767,1.17851434189467,1.56608848879013,1.4911955666024,0.151452386666368,0.151143120213571,0,0,0,0,0,0,0.280888840263504,0,0,0,0.422530259330042,0,0,0,0,0,0,0.11418387971906,0,0.148442139064825,0.173485326766136,0,0,0,0.117588707135705,0.125666591329675,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0.599162557619291,0,0.251308704225729,0.347648640384553,0.511430914660661,0.41557608911912,0.162241263067758,0,0,0,0,0,0,0,0.150704817835715,0,0.12811372028485,0.187403449119458,0,0,0,0,0,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0.820481806145422,0.327869890753351,0,0.631016438832513,0.780877488593277,0,0.238968797952552,0.445597348164788,0,0.809621403349789,0,0,0,0,0.178065603667255,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21183207086382,0,0,0,0,0,0,0,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0,0.129614973291793,0,0.56369293868419,0,0,0,0,0,0.352071715937262,0.13020438484395,0.104859344425711,0.966336483304024,1.15212002503146,0,0,0,0,0,0,0.120195449519969,0,0,0,0,0,0,0,0,0.221985953374065,0,0,0,0,0,0,0,0.564751842617067,0.460325236507177,0,0.515559547031063,0.685082519770642,1.5107877947794,0.675022500231806,0.45032120322422,0,0,0,0,0,0,0.209613162627982,0,0,0,0,0,0,0,0,0.128050304809739,0,0.476293691283074,0,0,0,0,0,0,0,0.290692833264657,0,0.169229215783353,0,0,0,0,0.237270036248348,0,0,0.154936841185966,0,0.499621155875892,0,0,0,0,0|short_description=p4@Sh3gl3}} | ||
|EntrezGene=20408 | |||
|HGNC= | |||
|MCL_coexpression_id=87 | |||
|UniProt=Q62421,Q497N4,Q9CZV7 | |||
|association_with_transcript=28bp_to_ENSMUST00000032874,NM_017400,uc009icv.1,uc009icw.1,uc009icx.1,uc012foc.1_5end | |||
|description=CAGE_peak_4_at_Sh3gl3_5end | |||
|id=chr7:89319756..89319761,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.48e-22!23;CL:0000337!1.48e-22!23;CL:0000540!3.85e-22!33;CL:0000047!3.85e-22!33;CL:0000031!3.85e-22!33;CL:0000404!3.85e-22!33;CL:0000221!1.51e-19!44;CL:0000133!1.51e-19!44;CL:0002319!1.13e-18!43;CL:0000393!2.40e-17!39;CL:0000211!2.40e-17!39;CL:0000055!1.01e-14!50;CL:0002321!8.55e-09!70;CL:0000220!8.55e-09!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.06e-53,23;CL:0000337,5.06e-53,23;CL:0000540,2.38e-36,33;CL:0000047,2.38e-36,33;CL:0000031,2.38e-36,33;CL:0000404,2.38e-36,33;CL:0000393,1.93e-30,39;CL:0000211,1.93e-30,39;CL:0002319,2.05e-27,43;CL:0000221,9.63e-27,44;CL:0000133,9.63e-27,44;CL:0002321,5.34e-16,70;CL:0000120,1.16e-15,3;CL:0002612,2.28e-15,3;CL:0002614,2.86e-15,3;CL:0002610,4.47e-15,3;CL:0000723,8.88e-12,91;CL:0000048,8.88e-12,91;CL:0002611,1.37e-11,2;CL:0000034,6.63e-11,97;CL:0002613,1.22e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!5.33e-25!75;UBERON:0001016!5.33e-25!75;UBERON:0001017!1.21e-23!73;UBERON:0005743!1.21e-23!73;UBERON:0004121!5.32e-22!102;UBERON:0000924!5.32e-22!102;UBERON:0006601!5.32e-22!102;UBERON:0002020!8.82e-20!34;UBERON:0002346!2.58e-19!71;UBERON:0003075!2.58e-19!71;UBERON:0007284!2.58e-19!71;UBERON:0001049!3.88e-18!52;UBERON:0005068!3.88e-18!52;UBERON:0006241!3.88e-18!52;UBERON:0007135!3.88e-18!52;UBERON:0002616!3.45e-15!49;UBERON:0000955!1.07e-14!50;UBERON:0006238!1.07e-14!50;UBERON:0002791!4.83e-14!29;UBERON:0003528!4.83e-14!29;UBERON:0001893!4.83e-14!29;UBERON:0000033!2.34e-13!63;UBERON:0003080!1.03e-11!40;UBERON:0002780!6.77e-11!39;UBERON:0001890!6.77e-11!39;UBERON:0006240!6.77e-11!39;UBERON:0003056!8.02e-11!49;UBERON:0002240!1.06e-08!6;UBERON:0005174!1.06e-08!6;UBERON:0001137!1.06e-08!6;UBERON:0002420!5.12e-08!8;UBERON:0007245!5.12e-08!8;UBERON:0010009!5.12e-08!8;UBERON:0010011!5.12e-08!8;UBERON:0000454!5.12e-08!8;UBERON:0000956!5.49e-08!21;UBERON:0001869!5.49e-08!21;UBERON:0000203!5.49e-08!21;UBERON:0001948!6.86e-08!5;UBERON:0002315!6.86e-08!5;UBERON:0002298!7.10e-08!6;UBERON:0007811!8.51e-08!86;UBERON:0003076!1.24e-07!12;UBERON:0003057!1.24e-07!12;UBERON:0000153!5.80e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001948,2.82e-25,5;UBERON:0002315,2.82e-25,5;UBERON:0002240,4.64e-21,6;UBERON:0005174,4.64e-21,6;UBERON:0001137,4.64e-21,6;UBERON:0001017,1.84e-17,73;UBERON:0001016,6.20e-17,75;UBERON:0002020,3.08e-16,34;UBERON:0000073,5.27e-16,54;UBERON:0002420,2.20e-15,8;UBERON:0007245,2.20e-15,8;UBERON:0010009,2.20e-15,8;UBERON:0010011,2.20e-15,8;UBERON:0000454,2.20e-15,8;UBERON:0002257,2.28e-15,3;UBERON:0002038,2.86e-15,3;UBERON:0009663,2.86e-15,3;UBERON:0009661,2.86e-15,3;UBERON:0000125,2.86e-15,3;UBERON:0002308,2.86e-15,3;UBERON:0004684,4.47e-15,3;UBERON:0002275,4.47e-15,3;UBERON:0004121,7.03e-13,95;UBERON:0000924,7.03e-13,95;UBERON:0006601,7.03e-13,95;UBERON:0002950,1.35e-11,4;UBERON:0001891,1.35e-11,4;UBERON:0009616,1.35e-11,4;UBERON:0010286,1.35e-11,4;UBERON:0002256,1.37e-11,2;UBERON:0003076,1.77e-10,12;UBERON:0003057,1.77e-10,12;UBERON:0001049,4.64e-10,52;UBERON:0005068,4.64e-10,52;UBERON:0006241,4.64e-10,52;UBERON:0007135,4.64e-10,52;UBERON:0002346,7.29e-08,64;UBERON:0003075,7.29e-08,64;UBERON:0007284,7.29e-08,64 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194429899074283,0,0,0,0,0,0,0,0,1.01158230429799,1.5869729378161,3.80298842103708,0,0,0,0,0,0,0,0,0.270011876663381,0.210324961351382,3.14216082844184,3.75476519617743,0.489963196859816,0.0958454710182364,0,1.10115880999389,1.53224805702225,1.22885226604995,1.31886287730194,2.28719109006024,0.52091337055676,1.3959149950069,1.68828783009504,1.06958773443767,1.17851434189467,1.56608848879013,1.4911955666024,0.151452386666368,0.151143120213571,0,0,0,0,0,0,0.280888840263504,0,0,0,0.422530259330042,0,0,0,0,0,0,0.11418387971906,0,0.148442139064825,0.173485326766136,0,0,0,0.117588707135705,0.125666591329675,0,0,0,0,0,0,0,0,0.209446706813455,0,0,0,0,0.599162557619291,0,0.251308704225729,0.347648640384553,0.511430914660661,0.41557608911912,0.162241263067758,0,0,0,0,0,0,0,0.150704817835715,0,0.12811372028485,0.187403449119458,0,0,0,0,0,0.278047249225598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0.820481806145422,0.327869890753351,0,0.631016438832513,0.780877488593277,0,0.238968797952552,0.445597348164788,0,0.809621403349789,0,0,0,0,0.178065603667255,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21183207086382,0,0,0,0,0,0,0,0.370850604021019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0,0.129614973291793,0,0.56369293868419,0,0,0,0,0,0.352071715937262,0.13020438484395,0.104859344425711,0.966336483304024,1.15212002503146,0,0,0,0,0,0,0.120195449519969,0,0,0,0,0,0,0,0,0.221985953374065,0,0,0,0,0,0,0,0.564751842617067,0.460325236507177,0,0.515559547031063,0.685082519770642,1.5107877947794,0.675022500231806,0.45032120322422,0,0,0,0,0,0,0.209613162627982,0,0,0,0,0,0,0,0,0.128050304809739,0,0.476293691283074,0,0,0,0,0,0,0,0.290692833264657,0,0.169229215783353,0,0,0,0,0.237270036248348,0,0,0.154936841185966,0,0.499621155875892,0,0,0,0,0 | |||
|short_description=p4@Sh3gl3 | |||
}} |
Revision as of 14:22, 14 September 2013
Short description: | p4@Sh3gl3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Sh3gl3_5end |
Coexpression cluster: | MCL_coexpression_mm9:87 |
Association with transcript: | 28bp_to_ENSMUST00000032874, NM_017400, uc009icv.1, uc009icw.1, uc009icx.1, uc012foc.1_5end |
EntrezGene: | Sh3gl3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.06e-53 | 23 |
neuroblast (sensu Vertebrata) | 5.06e-53 | 23 |
neuron | 2.38e-36 | 33 |
neuronal stem cell | 2.38e-36 | 33 |
neuroblast | 2.38e-36 | 33 |
electrically signaling cell | 2.38e-36 | 33 |
electrically responsive cell | 1.93e-30 | 39 |
electrically active cell | 1.93e-30 | 39 |
neural cell | 2.05e-27 | 43 |
ectodermal cell | 9.63e-27 | 44 |
neurectodermal cell | 9.63e-27 | 44 |
embryonic cell | 5.34e-16 | 70 |
granule cell | 1.16e-15 | 3 |
neuron of the ventral spinal cord | 2.28e-15 | 3 |
neuron of the substantia nigra | 2.86e-15 | 3 |
raphe nuclei neuron | 4.47e-15 | 3 |
somatic stem cell | 8.88e-12 | 91 |
multi fate stem cell | 8.88e-12 | 91 |
neuron of the dorsal spinal cord | 1.37e-11 | 2 |
stem cell | 6.63e-11 | 97 |
striatum neuron | 1.22e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.