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Coexpression cluster:C73: Difference between revisions

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{{Coexpression_clusters
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Latest revision as of 10:24, 17 September 2013


Full id: C73_pineal_eye_retina_caudate_cerebellum_left_parietal



Phase1 CAGE Peaks

Hg19::chr10:103595043..103595082,-p@chr10:103595043..103595082
-
Hg19::chr10:103603714..103603739,-p4@KCNIP2
Hg19::chr10:115803417..115803428,-p@chr10:115803417..115803428
-
Hg19::chr10:115803446..115803457,-p@chr10:115803446..115803457
-
Hg19::chr10:115803583..115803609,+p2@ADRB1
Hg19::chr10:115803618..115803641,+p1@ADRB1
Hg19::chr10:115803650..115803661,+p4@ADRB1
Hg19::chr10:30389039..30389064,+p@chr10:30389039..30389064
+
Hg19::chr10:78900397..78900404,-p@chr10:78900397..78900404
-
Hg19::chr10:78900413..78900422,-p@chr10:78900413..78900422
-
Hg19::chr10:78900431..78900445,-p@chr10:78900431..78900445
-
Hg19::chr10:78900483..78900510,-p@chr10:78900483..78900510
-
Hg19::chr10:81664635..81664675,+p1@MBL1P
Hg19::chr11:113452850..113452877,+p@chr11:113452850..113452877
+
Hg19::chr11:122852529..122852549,-p1@BSX
Hg19::chr11:122852557..122852570,-p2@BSX
Hg19::chr11:123229399..123229419,+p@chr11:123229399..123229419
+
Hg19::chr11:123300812..123300821,+p11@ENST00000533341
p11@uc001pyu.2
Hg19::chr11:123300840..123300865,+p4@ENST00000533341
p4@uc001pyu.2
Hg19::chr11:18039672..18039678,-p@chr11:18039672..18039678
-
Hg19::chr11:18040537..18040547,-p@chr11:18040537..18040547
-
Hg19::chr11:18040944..18040946,-p@chr11:18040944..18040946
-
Hg19::chr11:18041194..18041197,-p@chr11:18041194..18041197
-
Hg19::chr11:18041199..18041200,-p@chr11:18041199..18041200
-
Hg19::chr11:18041206..18041211,-p@chr11:18041206..18041211
-
Hg19::chr11:18041244..18041266,-p@chr11:18041244..18041266
-
Hg19::chr11:18041323..18041328,-p@chr11:18041323..18041328
-
Hg19::chr11:18042314..18042326,-p@chr11:18042314..18042326
-
Hg19::chr11:18042358..18042391,-p@chr11:18042358..18042391
-
Hg19::chr11:18042393..18042396,-p@chr11:18042393..18042396
-
Hg19::chr11:18042402..18042441,-p@chr11:18042402..18042441
-
Hg19::chr11:18042446..18042463,-p@chr11:18042446..18042463
-
Hg19::chr11:18042584..18042593,-p@chr11:18042584..18042593
-
Hg19::chr11:18053180..18053192,-p@chr11:18053180..18053192
-
Hg19::chr11:18067959..18067962,-p@chr11:18067959..18067962
-
Hg19::chr11:20064625..20064630,+p@chr11:20064625..20064630
+
Hg19::chr12:107676569..107676576,-p@chr12:107676569..107676576
-
Hg19::chr12:115761444..115761449,-p@chr12:115761444..115761449
-
Hg19::chr12:115775302..115775305,-p@chr12:115775302..115775305
-
Hg19::chr12:115775389..115775392,-p@chr12:115775389..115775392
-
Hg19::chr12:115775465..115775467,-p@chr12:115775465..115775467
-
Hg19::chr12:115775564..115775579,-p@chr12:115775564..115775579
-
Hg19::chr12:119419336..119419353,+p1@SRRM4
Hg19::chr12:128210605..128210613,-p@chr12:128210605..128210613
-
Hg19::chr12:128210616..128210625,-p@chr12:128210616..128210625
-
Hg19::chr12:128210626..128210641,-p@chr12:128210626..128210641
-
Hg19::chr12:128210666..128210685,-p@chr12:128210666..128210685
-
Hg19::chr12:131517200..131517208,-p@chr12:131517200..131517208
-
Hg19::chr12:14956076..14956089,+p4@C12orf60
Hg19::chr12:14956107..14956118,+p6@C12orf60
Hg19::chr12:14956583..14956636,+p1@C12orf60
Hg19::chr12:15134610..15134617,+p@chr12:15134610..15134617
+
Hg19::chr12:55422293..55422300,+p@chr12:55422293..55422300
+
Hg19::chr12:55422565..55422604,+p@chr12:55422565..55422604
+
Hg19::chr12:55422858..55422866,+p@chr12:55422858..55422866
+
Hg19::chr12:5542952..5542976,-p@chr12:5542952..5542976
-
Hg19::chr12:56582028..56582062,+p@chr12:56582028..56582062
+
Hg19::chr12:6956468..6956483,+p@chr12:6956468..6956483
+
Hg19::chr12:71314319..71314322,-p14@PTPRR
Hg19::chr12:71314547..71314562,-p8@PTPRR
Hg19::chr12:96629369..96629384,-p@chr12:96629369..96629384
-
Hg19::chr12:97924299..97924308,+p4@RMST
Hg19::chr12:99734965..99734976,-p@chr12:99734965..99734976
-
Hg19::chr13:21406211..21406218,-p@chr13:21406211..21406218
-
Hg19::chr14:104698553..104698562,+p@chr14:104698553..104698562
+
Hg19::chr14:48145321..48145332,-p@chr14:48145321..48145332
-
Hg19::chr14:49258125..49258147,-p@chr14:49258125..49258147
-
Hg19::chr14:81668867..81668869,+p@chr14:81668867..81668869
+
Hg19::chr15:78913665..78913673,-p9@CHRNA3
Hg19::chr15:79575053..79575072,+p2@ANKRD34C
Hg19::chr16:1764182..1764224,-p@chr16:1764182..1764224
-
Hg19::chr16:49524879..49524905,-p@chr16:49524879..49524905
-
Hg19::chr16:49524938..49524959,-p@chr16:49524938..49524959
-
Hg19::chr16:67918770..67918820,+p1@NRN1L
Hg19::chr17:21454351..21454386,-p@chr17:21454351..21454386
-
Hg19::chr17:4348321..4348326,+p@chr17:4348321..4348326
+
Hg19::chr17:55484129..55484139,+p@chr17:55484129..55484139
+
Hg19::chr17:55683829..55683832,+p@chr17:55683829..55683832
+
Hg19::chr17:63215814..63215840,+p@chr17:63215814..63215840
+
Hg19::chr17:63215855..63215879,+p@chr17:63215855..63215879
+
Hg19::chr17:74463567..74463574,+p4@AANAT
Hg19::chr17:74463650..74463673,+p3@AANAT
Hg19::chr17:74463679..74463701,+p1@AANAT
Hg19::chr17:74463711..74463736,+p2@AANAT
Hg19::chr17:7559616..7559627,+p12@ATP1B2
Hg19::chr17:7560307..7560312,+p19@ATP1B2
Hg19::chr17:9801406..9801413,-p@chr17:9801406..9801413
-
Hg19::chr17:9808887..9808897,-p7@RCVRN
Hg19::chr18:56963107..56963117,-p@chr18:56963107..56963117
-
Hg19::chr19:12941455..12941458,-p7@RTBDN
Hg19::chr19:1417437..1417456,+p@chr19:1417437..1417456
+
Hg19::chr19:2189209..2189212,+p@chr19:2189209..2189212
+
Hg19::chr19:2189225..2189231,+p@chr19:2189225..2189231
+
Hg19::chr19:2189232..2189243,+p@chr19:2189232..2189243
+
Hg19::chr19:2189245..2189252,+p@chr19:2189245..2189252
+
Hg19::chr19:39027743..39027757,-p@chr19:39027743..39027757
-
Hg19::chr19:40854890..40854898,-p6@C19orf47
Hg19::chr19:4456764..4456784,+p@chr19:4456764..4456784
+
Hg19::chr19:46001697..46001729,+p7@PPM1N
Hg19::chr19:49517640..49517650,+p@chr19:49517640..49517650
+
Hg19::chr1:100315742..100315749,+p7@AGL
Hg19::chr1:110167651..110167701,+p25@AMPD2
Hg19::chr1:151700765..151700783,+p2@RIIAD1
Hg19::chr1:154540028..154540037,+p4@CHRNB2
Hg19::chr1:156786260..156786268,-p15@SH2D2A
Hg19::chr1:201509224..201509227,+p@chr1:201509224..201509227
+
Hg19::chr1:223254666..223254683,-p@chr1:223254666..223254683
-
Hg19::chr1:244192126..244192127,+p@chr1:244192126..244192127
+
Hg19::chr1:57906101..57906119,+p@chr1:57906101..57906119
+
Hg19::chr1:57906878..57906904,+p@chr1:57906878..57906904
+
Hg19::chr1:57914395..57914398,+p@chr1:57914395..57914398
+
Hg19::chr1:57975398..57975401,+p@chr1:57975398..57975401
+
Hg19::chr1:77424411..77424419,+p@chr1:77424411..77424419
+
Hg19::chr1:77480661..77480670,+p@chr1:77480661..77480670
+
Hg19::chr1:97922018..97922033,-p@chr1:97922018..97922033
-
Hg19::chr20:23168592..23168636,+p1@uc002wsw.1
Hg19::chr20:44991864..44991887,-p10@SLC35C2
Hg19::chr20:48098996..48099010,-p6@KCNB1
Hg19::chr20:48099013..48099034,-p5@KCNB1
Hg19::chr22:25723196..25723199,+p1@ENST00000433457
Hg19::chr22:46457398..46457428,+p@chr22:46457398..46457428
+
Hg19::chr2:108602341..108602352,+p@chr2:108602341..108602352
+
Hg19::chr2:108602414..108602423,+p@chr2:108602414..108602423
+
Hg19::chr2:108602711..108602722,+p3@SLC5A7
Hg19::chr2:108602728..108602775,+p2@SLC5A7
Hg19::chr2:108602872..108602882,+p5@SLC5A7
Hg19::chr2:108602971..108602986,+p1@SLC5A7
Hg19::chr2:108616342..108616384,+p@chr2:108616342..108616384
+
Hg19::chr2:154265434..154265447,+p@chr2:154265434..154265447
+
Hg19::chr2:159651821..159651836,+p1@DAPL1
Hg19::chr2:17064630..17064651,+p@chr2:17064630..17064651
+
Hg19::chr2:17065916..17065929,+p@chr2:17065916..17065929
+
Hg19::chr2:17075761..17075773,+p@chr2:17075761..17075773
+
Hg19::chr2:17099595..17099598,+p@chr2:17099595..17099598
+
Hg19::chr2:17130301..17130351,+p@chr2:17130301..17130351
+
Hg19::chr2:17141934..17141935,+p@chr2:17141934..17141935
+
Hg19::chr2:17185712..17185735,+p@chr2:17185712..17185735
+
Hg19::chr2:17185958..17185998,+p@chr2:17185958..17185998
+
Hg19::chr2:17186116..17186126,+p@chr2:17186116..17186126
+
Hg19::chr2:182850631..182850647,+p11@PPP1R1C
Hg19::chr2:182850668..182850680,+p10@PPP1R1C
Hg19::chr2:182850711..182850730,+p7@PPP1R1C
Hg19::chr2:182850743..182850754,+p9@PPP1R1C
Hg19::chr2:182850776..182850802,+p3@PPP1R1C
Hg19::chr2:182850817..182850826,+p16@PPP1R1C
Hg19::chr2:182850860..182850893,+p13@PPP1R1C
Hg19::chr2:210443993..210444094,+p4@MAP2
Hg19::chr2:220174166..220174177,-p2@PTPRN
Hg19::chr2:4224059..4224062,-p@chr2:4224059..4224062
-
Hg19::chr2:48705144..48705150,+p@chr2:48705144..48705150
+
Hg19::chr2:55172046..55172064,+p@chr2:55172046..55172064
+
Hg19::chr3:100942376..100942381,-p@chr3:100942376..100942381
-
Hg19::chr3:100942645..100942655,-p@chr3:100942645..100942655
-
Hg19::chr3:139938385..139938390,+p@chr3:139938385..139938390
+
Hg19::chr3:139938398..139938411,+p@chr3:139938398..139938411
+
Hg19::chr3:139938469..139938470,+p@chr3:139938469..139938470
+
Hg19::chr3:139938513..139938517,+p@chr3:139938513..139938517
+
Hg19::chr3:140285829..140285840,+p@chr3:140285829..140285840
+
Hg19::chr3:140285875..140285914,+p@chr3:140285875..140285914
+
Hg19::chr3:179370517..179370531,+p2@USP13
Hg19::chr3:192959104..192959120,+p5@HRASLS
Hg19::chr3:50232232..50232243,+p@chr3:50232232..50232243
+
Hg19::chr3:54952432..54952459,-p@chr3:54952432..54952459
-
Hg19::chr3:99691212..99691254,+p@chr3:99691212..99691254
+
Hg19::chr4:185331325..185331337,-p@chr4:185331325..185331337
-
Hg19::chr4:21054697..21054727,-p@chr4:21054697..21054727
-
Hg19::chr4:2390245..2390256,-p@chr4:2390245..2390256
-
Hg19::chr4:71458016..71458019,+p3@AMBN
Hg19::chr4:9533964..9534018,+p@chr4:9533964..9534018
+
Hg19::chr5:124817523..124817531,-p@chr5:124817523..124817531
-
Hg19::chr5:136362136..136362159,+p@chr5:136362136..136362159
+
Hg19::chr5:150027421..150027440,+p10@AB384087
Hg19::chr5:161494521..161494557,+p7@GABRG2
Hg19::chr5:166406070..166406121,+p@chr5:166406070..166406121
+
Hg19::chr5:166406199..166406230,+p@chr5:166406199..166406230
+
Hg19::chr5:166406261..166406274,+p@chr5:166406261..166406274
+
Hg19::chr5:77072305..77072314,-p6@TBCA
Hg19::chr5:79331200..79331238,+p2@THBS4
Hg19::chr5:86529745..86529749,+p@chr5:86529745..86529749
+
Hg19::chr6:133561725..133561741,+p7@EYA4
Hg19::chr6:158734173..158734183,+p7@TULP4
Hg19::chr6:166091991..166092010,-p@chr6:166091991..166092010
-
Hg19::chr6:170125315..170125326,-p@chr6:170125315..170125326
-
Hg19::chr6:170125341..170125352,-p@chr6:170125341..170125352
-
Hg19::chr6:170125409..170125425,-p@chr6:170125409..170125425
-
Hg19::chr6:33401595..33401617,+p@chr6:33401595..33401617
+
Hg19::chr6:37525756..37525767,+p@chr6:37525756..37525767
+
Hg19::chr6:37527970..37527984,-p@chr6:37527970..37527984
-
Hg19::chr6:42141152..42141168,+p5@GUCA1A
Hg19::chr6:42141181..42141193,+p6@GUCA1A
Hg19::chr6:64281529..64281540,+p46@PTP4A1
Hg19::chr6:64281555..64281558,+p56@PTP4A1
Hg19::chr6:64281591..64281594,+p58@PTP4A1
Hg19::chr6:64281607..64281618,+p38@PTP4A1
Hg19::chr6:81150068..81150069,+p@chr6:81150068..81150069
+
Hg19::chr7:120842768..120842790,-p@chr7:120842768..120842790
-
Hg19::chr7:120969045..120969086,+p1@WNT16
Hg19::chr7:120969099..120969104,+p3@WNT16
Hg19::chr7:129068447..129068450,+p@chr7:129068447..129068450
+
Hg19::chr7:129084265..129084288,-p@chr7:129084265..129084288
-
Hg19::chr7:32468385..32468392,-p@chr7:32468385..32468392
-
Hg19::chr7:66193422..66193442,+p@chr7:66193422..66193442
+
Hg19::chr7:9198682..9198694,-p@chr7:9198682..9198694
-
Hg19::chr7:98519448..98519459,+p@chr7:98519448..98519459
+
Hg19::chr7:98519460..98519490,+p@chr7:98519460..98519490
+
Hg19::chr8:105105807..105105818,+p@chr8:105105807..105105818
+
Hg19::chr8:116127086..116127103,+p@chr8:116127086..116127103
+
Hg19::chr8:1532275..1532281,-p@chr8:1532275..1532281
-
Hg19::chr8:24771037..24771049,-p@chr8:24771037..24771049
-
Hg19::chr8:31496751..31496768,+p12@NRG1
Hg19::chr8:31496771..31496795,+p18@NRG1
Hg19::chr8:31496809..31496826,+p28@NRG1
Hg19::chr8:31902374..31902396,+p@chr8:31902374..31902396
+
Hg19::chr8:42127690..42127695,+p@chr8:42127690..42127695
+
Hg19::chr8:80740022..80740033,-p@chr8:80740022..80740033
-
Hg19::chr8:87751918..87751928,-p@chr8:87751918..87751928
-
Hg19::chr8:87751931..87751947,-p@chr8:87751931..87751947
-
Hg19::chr8:87755821..87755822,-p10@CNGB3
Hg19::chr8:87755854..87755877,-p1@CNGB3
Hg19::chr8:87755941..87755948,-p4@CNGB3
Hg19::chr8:87755995..87756001,-p7@CNGB3
Hg19::chr8:87756009..87756027,-p9@CNGB3
Hg19::chr8:87756039..87756052,-p8@CNGB3
Hg19::chr9:135037433..135037450,+p7@NTNG2
Hg19::chr9:139226325..139226334,+p@chr9:139226325..139226334
+
Hg19::chr9:25264978..25265001,+p@chr9:25264978..25265001
+
Hg19::chr9:25265055..25265082,+p@chr9:25265055..25265082
+
Hg19::chr9:37650858..37650884,+p3@FRMPD1
Hg19::chr9:37650945..37651007,+p1@FRMPD1
Hg19::chr9:37668094..37668097,+p6@FRMPD1
Hg19::chr9:93922017..93922055,+p1@LINC00484
Hg19::chrX:135388147..135388181,+p1@GPR112
Hg19::chrX:1731743..1731750,+p@chrX:1731743..1731750
+
Hg19::chrX:1731755..1731763,+p@chrX:1731755..1731763
+
Hg19::chrX:1731768..1731785,+p@chrX:1731768..1731785
+
Hg19::chrX:1731820..1731834,+p@chrX:1731820..1731834
+
Hg19::chrX:1731838..1731843,+p@chrX:1731838..1731843
+
Hg19::chrX:1733876..1733889,+p3@ASMT
Hg19::chrX:1733941..1733965,+p1@ASMT
Hg19::chrX:1733966..1733993,+p2@ASMT
Hg19::chrX:1734001..1734019,+p4@ASMT
Hg19::chrX:1734031..1734040,+p7@ASMT
Hg19::chrX:1734051..1734062,+p5@ASMT
Hg19::chrX:9846797..9846811,+p@chrX:9846797..9846811
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0032501multicellular organismal process0.000798875022718607
GO:0007601visual perception0.000798875022718607
GO:0050953sensory perception of light stimulus0.000798875022718607
GO:0031226intrinsic to plasma membrane0.00116951587837936
GO:0006811ion transport0.00116951587837936
GO:0008048calcium sensitive guanylate cyclase activator activity0.00116951587837936
GO:0022836gated channel activity0.00117528981583149
GO:0030250guanylate cyclase activator activity0.00117528981583149
GO:0007275multicellular organismal development0.00117528981583149
GO:0030249guanylate cyclase regulator activity0.00146711139623314
GO:0022834ligand-gated channel activity0.00146711139623314
GO:0015276ligand-gated ion channel activity0.00146711139623314
GO:0015075ion transmembrane transporter activity0.00237469371938107
GO:0005887integral to plasma membrane0.00237469371938107
GO:0007271synaptic transmission, cholinergic0.00237469371938107
GO:0005216ion channel activity0.00237469371938107
GO:0030001metal ion transport0.00237469371938107
GO:0005261cation channel activity0.00237469371938107
GO:0022838substrate specific channel activity0.00237469371938107
GO:0004725protein tyrosine phosphatase activity0.00237469371938107
GO:0005892nicotinic acetylcholine-gated receptor-channel complex0.00237469371938107
GO:0022803passive transmembrane transporter activity0.00237469371938107
GO:0015267channel activity0.00237469371938107
GO:0031420alkali metal ion binding0.00238072514538406
GO:0009653anatomical structure morphogenesis0.00254613119626893
GO:0032502developmental process0.00264905827950136
GO:0022891substrate-specific transmembrane transporter activity0.00372411254189549
GO:0003008system process0.00383473901382672
GO:0046873metal ion transmembrane transporter activity0.00383473901382672
GO:0019198transmembrane receptor protein phosphatase activity0.00383473901382672
GO:0005001transmembrane receptor protein tyrosine phosphatase activity0.00383473901382672
GO:0015464acetylcholine receptor activity0.00455608242389527
GO:0006812cation transport0.00470718568945914
GO:0042166acetylcholine binding0.00470718568945914
GO:0022857transmembrane transporter activity0.00470718568945914
GO:0004889nicotinic acetylcholine-activated cation-selective channel activity0.00487260502103891
GO:0008324cation transmembrane transporter activity0.00490553779108503
GO:0050877neurological system process0.00544917950786975
GO:0004721phosphoprotein phosphatase activity0.00544917950786975
GO:0005230extracellular ligand-gated ion channel activity0.00582568536965618
GO:0005886plasma membrane0.00582568536965618
GO:0022892substrate-specific transporter activity0.00659272152475054
GO:0030594neurotransmitter receptor activity0.00675336226925213
GO:0030955potassium ion binding0.00675336226925213
GO:0042165neurotransmitter binding0.00692763242553277
GO:0044459plasma membrane part0.00692763242553277
GO:0045211postsynaptic membrane0.0072743977899669
GO:0048666neuron development0.00779831101784334
GO:0042401biogenic amine biosynthetic process0.00779831101784334
GO:0007154cell communication0.00779831101784334
GO:0044456synapse part0.00839689705849121
GO:0042398amino acid derivative biosynthetic process0.0108324502531496
GO:0008016regulation of heart contraction0.0108324502531496
GO:0048856anatomical structure development0.0108324502531496
GO:0005578proteinaceous extracellular matrix0.0108324502531496
GO:0043176amine binding0.0108324502531496
GO:0007165signal transduction0.0108324502531496
GO:0008292acetylcholine biosynthetic process0.0108324502531496
GO:0043033isoamylase complex0.0108324502531496
GO:0045163clustering of voltage-gated potassium channels0.0108324502531496
GO:0005223intracellular cGMP activated cation channel activity0.0108324502531496
GO:0004059aralkylamine N-acetyltransferase activity0.0108324502531496
GO:0005307choline:sodium symporter activity0.0108324502531496
GO:0003015heart process0.0113021478812126
GO:0060047heart contraction0.0113021478812126
GO:0016791phosphoric monoester hydrolase activity0.0113021478812126
GO:0048858cell projection morphogenesis0.0122864640209472
GO:0032990cell part morphogenesis0.0122864640209472
GO:0030030cell projection organization and biogenesis0.0122864640209472
GO:0030182neuron differentiation0.0131595252074336
GO:0031224intrinsic to membrane0.0145126129353322
GO:0014059regulation of dopamine secretion0.0145126129353322
GO:0003099positive regulation of the force of heart contraction by chemical signal0.0145126129353322
GO:0001996positive regulation of heart rate by epinephrine-norepinephrine0.0145126129353322
GO:0014046dopamine secretion0.0145126129353322
GO:0021952central nervous system projection neuron axonogenesis0.0145126129353322
GO:0002025norepinephrine-epinephrine vasodilation involved in regulation of systemic arterial blood pressure0.0145126129353322
GO:0021955central nervous system neuron axonogenesis0.0145126129353322
GO:0003057regulation of the force of heart contraction by chemical signal0.0145126129353322
GO:0001997positive regulation of the force of heart contraction by epinephrine-norepinephrine0.0145126129353322
GO:0032225regulation of synaptic transmission, dopaminergic0.0145126129353322
GO:00041344-alpha-glucanotransferase activity0.0145126129353322
GO:0002021response to dietary excess0.0145126129353322
GO:0004133glycogen debranching enzyme activity0.0145126129353322
GO:0044246regulation of multicellular organismal metabolic process0.0145126129353322
GO:0007023post-chaperonin tubulin folding pathway0.0145126129353322
GO:0030187melatonin biosynthetic process0.0145126129353322
GO:0005250A-type (transient outward) potassium channel activity0.0145126129353322
GO:0044253positive regulation of multicellular organismal metabolic process0.0145126129353322
GO:0030186melatonin metabolic process0.0145126129353322
GO:0002024diet induced thermogenesis0.0145126129353322
GO:0004135amylo-alpha-1,6-glucosidase activity0.0145126129353322
GO:0017096acetylserotonin O-methyltransferase activity0.0145126129353322
GO:0004940beta1-adrenergic receptor activity0.0145126129353322
GO:0048699generation of neurons0.0145264542492445
GO:0006470protein amino acid dephosphorylation0.0152141450789577
GO:0015672monovalent inorganic cation transport0.0152141450789577
GO:0006813potassium ion transport0.0165129510798601
GO:0005231excitatory extracellular ligand-gated ion channel activity0.0172768965547393
GO:0022008neurogenesis0.0172768965547393
GO:0006576biogenic amine metabolic process0.0179227437970209
GO:0042578phosphoric ester hydrolase activity0.0182609326219224
GO:0007600sensory perception0.0182609326219224
GO:0001505regulation of neurotransmitter levels0.0182609326219224
GO:0051239regulation of multicellular organismal process0.0182609326219224
GO:0015871choline transport0.0182609326219224
GO:0008291acetylcholine metabolic process0.0182609326219224
GO:0048814regulation of dendrite morphogenesis0.0182609326219224
GO:0030297transmembrane receptor protein tyrosine kinase activator activity0.0182609326219224
GO:0015220choline transmembrane transporter activity0.0182609326219224
GO:0010460positive regulation of heart rate0.0182609326219224
GO:0005641nuclear envelope lumen0.0182609326219224
GO:0016311dephosphorylation0.0184341090242922
GO:0051606detection of stimulus0.0185034313375373
GO:0007268synaptic transmission0.019986766021351
GO:0006575amino acid derivative metabolic process0.0216314411286028
GO:0050433regulation of catecholamine secretion0.0216314411286028
GO:0006930substrate-bound cell migration, cell extension0.0216314411286028
GO:0050773regulation of dendrite development0.0216314411286028
GO:0048813dendrite morphogenesis0.0216314411286028
GO:0004939beta-adrenergic receptor activity0.0216314411286028
GO:0031649heat generation0.0216314411286028
GO:0040015negative regulation of multicellular organism growth0.0216314411286028
GO:0015271outward rectifier potassium channel activity0.0216314411286028
GO:0030971receptor tyrosine kinase binding0.0216314411286028
GO:0050432catecholamine secretion0.0216314411286028
GO:0007267cell-cell signaling0.023109576764517
GO:0031402sodium ion binding0.0235294335981272
GO:0004888transmembrane receptor activity0.0238125713562054
GO:0019226transmission of nerve impulse0.0238125713562054
GO:0051179localization0.0238125713562054
GO:0008306associative learning0.0238125713562054
GO:0021954central nervous system neuron development0.0238125713562054
GO:0005221intracellular cyclic nucleotide activated cation channel activity0.0238125713562054
GO:0045823positive regulation of heart contraction0.0238125713562054
GO:0007025beta-tubulin folding0.0238125713562054
GO:0003085negative regulation of systemic arterial blood pressure0.0238125713562054
GO:0035094response to nicotine0.0238125713562054
GO:0045161neuronal ion channel clustering0.0238125713562054
GO:0001993regulation of systemic arterial blood pressure by norepinephrine-epinephrine0.0238125713562054
GO:0042439ethanolamine and derivative metabolic process0.0238125713562054
GO:0043855cyclic nucleotide-gated ion channel activity0.0238125713562054
GO:0050873brown fat cell differentiation0.0238125713562054
GO:0043235receptor complex0.0272427144715925
GO:0042435indole derivative biosynthetic process0.0274102920841841
GO:0002027regulation of heart rate0.0274102920841841
GO:0030345structural constituent of tooth enamel0.0274102920841841
GO:0030296protein tyrosine kinase activator activity0.0274102920841841
GO:0046219indolalkylamine biosynthetic process0.0274102920841841
GO:0007409axonogenesis0.0280242580161238
GO:0016788hydrolase activity, acting on ester bonds0.0286889742953508
GO:0009309amine biosynthetic process0.0286889742953508
GO:0048667neuron morphogenesis during differentiation0.0286889742953508
GO:0048812neurite morphogenesis0.0286889742953508
GO:0016021integral to membrane0.0286889742953508
GO:0003876AMP deaminase activity0.0286889742953508
GO:0021953central nervous system neuron differentiation0.0286889742953508
GO:0046923ER retention sequence binding0.0286889742953508
GO:0030021extracellular matrix structural constituent conferring compression resistance0.0286889742953508
GO:0003084positive regulation of systemic arterial blood pressure0.0286889742953508
GO:0001963synaptic transmission, dopaminergic0.0286889742953508
GO:0002026regulation of the force of heart contraction0.0286889742953508
GO:0008503benzodiazepine receptor activity0.0286889742953508
GO:0042596fear response0.0286889742953508
GO:0001750photoreceptor outer segment0.0286889742953508
GO:0001659thermoregulation0.0286889742953508
GO:0008076voltage-gated potassium channel complex0.0289135533180154
GO:0005201extracellular matrix structural constituent0.0289135533180154
GO:0006810transport0.0289135533180154
GO:0000904cellular morphogenesis during differentiation0.0299930541085604
GO:0016020membrane0.030878977163308
GO:0009409response to cold0.0310851830955258
GO:0045776negative regulation of blood pressure0.0310851830955258
GO:0043279response to alkaloid0.0310851830955258
GO:0005513detection of calcium ion0.0310851830955258
GO:0051234establishment of localization0.0328901857088302
GO:0031175neurite development0.0328901857088302
GO:0006929substrate-bound cell migration0.0334248423292574
GO:0031513nonmotile primary cilium0.0334248423292574
GO:0051899membrane depolarization0.0334248423292574
GO:0007021tubulin folding0.0334248423292574
GO:0007274neuromuscular synaptic transmission0.0334248423292574
GO:0030890positive regulation of B cell proliferation0.0334248423292574
GO:0030054cell junction0.0363256029176708
GO:0030888regulation of B cell proliferation0.0363256029176708
GO:0045777positive regulation of blood pressure0.0363256029176708
GO:0042551neuron maturation0.0363256029176708
GO:0044271nitrogen compound biosynthetic process0.0364472693186944
GO:0009986cell surface0.0367267633936235
GO:0048869cellular developmental process0.0376508653115509
GO:0030154cell differentiation0.0376508653115509
GO:0007613memory0.0377188512022913
GO:0006586indolalkylamine metabolic process0.0377188512022913
GO:0042430indole and derivative metabolic process0.0377188512022913
GO:0042434indole derivative metabolic process0.0377188512022913
GO:0014070response to organic cyclic substance0.0377188512022913
GO:0019002GMP binding0.0377188512022913
GO:0030553cGMP binding0.0377188512022913
GO:0044425membrane part0.0389184376383538
GO:0008047enzyme activator activity0.0391494289481195
GO:0008015blood circulation0.0391494289481195
GO:0003013circulatory system process0.0391494289481195
GO:0033555multicellular organismal response to stress0.0391494289481195
GO:0051924regulation of calcium ion transport0.0391494289481195
GO:0030295protein kinase activator activity0.0391494289481195
GO:0003044regulation of systemic arterial blood pressure mediated by a chemical signal0.0391494289481195
GO:0016358dendrite development0.0391494289481195
GO:0046928regulation of neurotransmitter secretion0.0391494289481195
GO:0005249voltage-gated potassium channel activity0.0405178695451716
GO:0009628response to abiotic stimulus0.0405178695451716
GO:0004871signal transducer activity0.0405178695451716
GO:0060089molecular transducer activity0.0405178695451716
GO:0005217intracellular ligand-gated ion channel activity0.0412015630467243
GO:0005251delayed rectifier potassium channel activity0.0412015630467243
GO:0000902cell morphogenesis0.0417796366273478
GO:0032989cellular structure morphogenesis0.0417796366273478
GO:0006814sodium ion transport0.043033354197689
GO:0046658anchored to plasma membrane0.0435343717737452
GO:0044421extracellular region part0.0448842301609418
GO:0031225anchored to membrane0.0455746976718215
GO:0015926glucosidase activity0.0455746976718215
GO:0008171O-methyltransferase activity0.0455746976718215
GO:0004935adrenoceptor activity0.0455746976718215
GO:0006816calcium ion transport0.0463551620012127
GO:0003073regulation of systemic arterial blood pressure0.0473149728791188
GO:0051087chaperone binding0.0473149728791188
GO:0050804regulation of synaptic transmission0.0473149728791188
GO:0045444fat cell differentiation0.0473149728791188
GO:0042136neurotransmitter biosynthetic process0.0473149728791188
GO:0015630microtubule cytoskeleton0.0482960629280656
GO:0043269regulation of ion transport0.0493837226025986
GO:0005391sodium:potassium-exchanging ATPase activity0.0493837226025986
GO:0007612learning0.0493837226025986
GO:0005509calcium ion binding0.0496509577699423



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
pineal body1.05e-792
regional part of epithalamus1.05e-792
secretory circumventricular organ1.05e-792
circumventricular organ1.05e-792
epithalamus1.05e-792
gland of diencephalon1.48e-404
neuroendocrine gland1.48e-404
regional part of diencephalon1.48e-404
diencephalon1.02e-237
future diencephalon1.02e-237
meninx4.66e-212
membrane organ4.66e-212
meningeal cluster4.66e-212
locus ceruleus5.70e-212
brainstem nucleus5.70e-212
hindbrain nucleus5.70e-212
pons1.83e-143
adult organism2.58e-09114
central nervous system2.54e-0881
neural plate2.64e-0882
presumptive neural plate2.64e-0882
neurectoderm5.98e-0886
brainstem6.78e-086
retina7.25e-086
photoreceptor array7.25e-086
posterior segment of eyeball7.25e-086
nervous system1.45e-0789
regional part of nervous system2.03e-0753
regional part of brain2.03e-0753
neural tube4.58e-0756
neural rod4.58e-0756
future spinal cord4.58e-0756
neural keel4.58e-0756


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.16.03195e-08
MA0004.10.0738293
MA0006.10.262521
MA0007.10.201871
MA0009.10.693875
MA0014.13.12585e-10
MA0017.10.00443583
MA0019.10.418157
MA0024.10.600908
MA0025.10.269676
MA0027.11.0665
MA0028.10.000305198
MA0029.10.928694
MA0030.10.418064
MA0031.10.0305729
MA0038.11.60475
MA0040.10.462401
MA0041.10.320269
MA0042.11.19812
MA0043.10.259667
MA0046.10.242922
MA0048.10.121489
MA0050.10.098001
MA0051.10.516696
MA0052.10.971637
MA0055.14.72509
MA0056.10
MA0057.10.00553163
MA0058.10.0182957
MA0059.10.0316542
MA0060.10.0641546
MA0061.10.0144143
MA0063.10
MA0066.11.60882
MA0067.10.561233
MA0068.10.0447737
MA0069.11.2591
MA0070.11.20415
MA0071.10.376128
MA0072.10.381798
MA0073.12.24127
MA0074.10.26296
MA0076.10.000112853
MA0077.10.0322134
MA0078.10.189271
MA0081.10.0529497
MA0083.11.0206
MA0084.10.943729
MA0087.10.592982
MA0088.10.00217468
MA0089.10
MA0090.10.0623672
MA0091.10.265723
MA0092.10.533956
MA0093.10.077302
MA0095.10
MA0098.10
MA0100.10.0395346
MA0101.10.0119952
MA0103.10.22195
MA0105.10.0136902
MA0106.10.404714
MA0107.10.00130266
MA0108.20.419792
MA0109.10
MA0111.10.0491074
MA0113.10.463035
MA0114.10.0124239
MA0115.10.19288
MA0116.10.0102172
MA0117.11.14842
MA0119.10.011462
MA0122.10.907865
MA0124.10.15854
MA0125.11.10023
MA0130.10
MA0131.10.131123
MA0132.10
MA0133.10
MA0135.10.793178
MA0136.10.00152889
MA0139.10.00156168
MA0140.10.0340435
MA0141.10.312691
MA0142.10.118517
MA0143.10.463685
MA0144.10.000472385
MA0145.10.0534816
MA0146.12.20217e-09
MA0147.10.000855469
MA0148.10.246172
MA0149.111.5998
MA0062.25.14778e-06
MA0035.20.10964
MA0039.21.10464e-13
MA0138.20.00784252
MA0002.20.108011
MA0137.20.00251637
MA0104.22.51903e-05
MA0047.20.0491018
MA0112.20.0338889
MA0065.20.0225373
MA0150.11.2016
MA0151.10
MA0152.10.525228
MA0153.10.0903446
MA0154.10.0395721
MA0155.10.000314356
MA0156.11.00921e-05
MA0157.10.0413846
MA0158.10
MA0159.10.0119705
MA0160.11.0551
MA0161.10
MA0162.16.91101e-05
MA0163.10.000414333
MA0164.10.0825909
MA0080.20.00120877
MA0018.22.35837
MA0099.20.864209
MA0079.21.82692e-13
MA0102.20.1822
MA0258.10.480578
MA0259.10.0258588
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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