FFCP PHASE1:Hg19::chr16:3179653..3179678,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr16:3179653..3179678,- | |||
|coexpression_cluster_id=C2151 | |coexpression_cluster_id=C2151 | ||
|description=CAGE_peak_at_chr16:3179653..3179678,- | |description=CAGE_peak_at_chr16:3179653..3179678,- | ||
|id=chr16:3179653..3179678,- | |id=chr16:3179653..3179678,- | ||
|ontology_enrichment_celltype=CL:0000037!3.59e-23!172;CL:0000566!3.59e-23!172;CL:0000738!7.45e-22!140;CL:0000542!2.48e-21!53;CL:0000051!2.48e-21!53;CL:0000838!3.08e-21!52;CL:0000988!1.91e-20!182;CL:0002032!2.52e-20!165;CL:0000837!2.52e-20!165;CL:0002087!1.18e-19!119;CL:0002031!1.91e-19!124;CL:0000791!4.25e-13!18;CL:0000789!4.25e-13!18;CL:0002420!4.25e-13!18;CL:0002419!4.25e-13!18;CL:0000790!4.25e-13!18;CL:0000084!2.65e-12!25;CL:0000827!2.65e-12!25;CL:0000945!5.56e-09!24;CL:0000826!5.56e-09!24;CL:0000625!1.27e-08!11 | |ontology_enrichment_celltype=CL:0000037!3.59e-23!172;CL:0000566!3.59e-23!172;CL:0000738!7.45e-22!140;CL:0000542!2.48e-21!53;CL:0000051!2.48e-21!53;CL:0000838!3.08e-21!52;CL:0000988!1.91e-20!182;CL:0002032!2.52e-20!165;CL:0000837!2.52e-20!165;CL:0002087!1.18e-19!119;CL:0002031!1.91e-19!124;CL:0000791!4.25e-13!18;CL:0000789!4.25e-13!18;CL:0002420!4.25e-13!18;CL:0002419!4.25e-13!18;CL:0000790!4.25e-13!18;CL:0000084!2.65e-12!25;CL:0000827!2.65e-12!25;CL:0000945!5.56e-09!24;CL:0000826!5.56e-09!24;CL:0000625!1.27e-08!11 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.53e-24;18!CL:0000789;1.53e-24;18!CL:0002419;1.53e-24;18!CL:0000084;4.13e-18;25!CL:0000625;8.06e-15;11!CL:0000542;9.96e-12;53!CL:0000624;8.66e-10;6!CL:0000236;2.56e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.06e-24,18;CL:0000789,1.06e-24,18;CL:0002420,1.06e-24,18;CL:0002419,1.06e-24,18;CL:0000790,1.06e-24,18;CL:0000838,7.63e-20,52;CL:0000542,2.70e-19,53;CL:0000051,2.70e-19,53;CL:0000084,2.64e-18,25;CL:0000827,2.64e-18,25;CL:0000625,5.68e-15,11;CL:0000738,7.12e-12,136;CL:0002087,2.89e-11,115;CL:0002031,1.85e-10,120;CL:0000037,7.94e-10,168;CL:0000624,9.02e-10,6;CL:0000988,1.04e-08,177;CL:0002032,6.66e-08,161;CL:0000837,6.66e-08,161 | |||
|ontology_enrichment_development_v019=CL:0000790;1.53e-24;18!CL:0000051;9.96e-12;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.71e-25!115;UBERON:0001049!2.84e-10!57;UBERON:0005068!2.84e-10!57;UBERON:0006241!2.84e-10!57;UBERON:0007135!2.84e-10!57;UBERON:0002390!1.75e-09!102;UBERON:0003061!1.75e-09!102;UBERON:0002193!2.68e-08!112;UBERON:0000178!4.92e-08!15;UBERON:0000179!4.92e-08!15;UBERON:0000463!4.92e-08!15;UBERON:0002616!5.72e-08!59;UBERON:0003080!7.61e-08!42;UBERON:0002780!1.96e-07!41;UBERON:0001890!1.96e-07!41;UBERON:0006240!1.96e-07!41;UBERON:0001893!2.20e-07!34;UBERON:0002020!2.33e-07!34;UBERON:0003528!2.33e-07!34;UBERON:0002791!5.10e-07!33 | |ontology_enrichment_uberon=UBERON:0007023!4.71e-25!115;UBERON:0001049!2.84e-10!57;UBERON:0005068!2.84e-10!57;UBERON:0006241!2.84e-10!57;UBERON:0007135!2.84e-10!57;UBERON:0002390!1.75e-09!102;UBERON:0003061!1.75e-09!102;UBERON:0002193!2.68e-08!112;UBERON:0000178!4.92e-08!15;UBERON:0000179!4.92e-08!15;UBERON:0000463!4.92e-08!15;UBERON:0002616!5.72e-08!59;UBERON:0003080!7.61e-08!42;UBERON:0002780!1.96e-07!41;UBERON:0001890!1.96e-07!41;UBERON:0006240!1.96e-07!41;UBERON:0001893!2.20e-07!34;UBERON:0002020!2.33e-07!34;UBERON:0003528!2.33e-07!34;UBERON:0002791!5.10e-07!33 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.99e-12;15!UBERON:0000179;6.99e-12;15!UBERON:0000463;6.99e-12;15!UBERON:0001869;2.64e-08;32!UBERON:0002791;2.78e-08;32!UBERON:0003528;2.84e-08;34!UBERON:0002020;2.84e-08;34!UBERON:0001893;2.84e-08;34!UBERON:0002420;1.89e-07;9!UBERON:0007245;1.89e-07;9!UBERON:0010009;1.89e-07;9!UBERON:0010011;1.89e-07;9!UBERON:0000454;1.89e-07;9!UBERON:0002390;2.38e-07;32!UBERON:0000125;3.24e-07;9!UBERON:0002308;3.24e-07;9!UBERON:0009663;3.53e-07;7!UBERON:0002780;6.69e-07;41!UBERON:0001890;6.69e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.00e-13,114;UBERON:0000178,5.58e-12,15;UBERON:0000179,5.58e-12,15;UBERON:0000463,5.58e-12,15;UBERON:0001049,3.89e-10,56;UBERON:0005068,3.89e-10,56;UBERON:0006241,3.89e-10,56;UBERON:0007135,3.89e-10,56;UBERON:0000073,6.06e-10,53;UBERON:0002616,6.06e-10,53;UBERON:0003528,1.17e-09,34;UBERON:0002020,1.17e-09,34;UBERON:0001893,1.77e-09,34;UBERON:0002780,2.14e-09,41;UBERON:0001890,2.14e-09,41;UBERON:0003080,2.14e-09,41;UBERON:0006240,2.14e-09,41;UBERON:0002791,3.42e-09,32;UBERON:0001869,4.28e-09,32;UBERON:0002420,1.26e-07,9;UBERON:0007245,1.26e-07,9;UBERON:0010009,1.26e-07,9;UBERON:0010011,1.26e-07,9;UBERON:0000454,1.26e-07,9;UBERON:0000125,1.69e-07,9;UBERON:0002308,1.69e-07,9;UBERON:0009663,2.41e-07,7;UBERON:0002370,3.79e-07,4;UBERON:0005058,3.79e-07,4;UBERON:0009113,3.79e-07,4;UBERON:0003295,3.79e-07,4;UBERON:0005562,3.79e-07,4;UBERON:0003075,8.02e-07,82;UBERON:0007284,8.02e-07,82 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0.261185628199839,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0.687720651731561,0.656804715599566,0.944529375764151,0.393364276848904,0.383829398097213,0.77408061658038,0,0,0,2.94375362205146,0.426507697462265,0.880801318004542,1.66198622559563,0.401088894940283,0.651032612147555,1.56740831967947,1.6194683300949,0.77272670290256,0.145398238779565,0.755751887377619,0,0.464858073811369,0,0.619412741790207,0,0.256160706529101,0.47296445977717,0,0,0,0.188242339542605,0,0,0.306083892370903,0.641858054152187,0,0.329851300186716,0.797854630486527,0.426224750532694,0,0.56738522469114,0,0.75374599577023,0,0,0,0.368277635987565,0.316462387440884,0.633765858935825,0.425208599930087,1.04829322754188,0.336985893439485,0.901061357049038,0.48217676009124,0.855038231223746,0.59675003159727,0.730656615058536,5.27988733383968,1.63841583378639,3.55803701545422,2.98711155796555,2.00197993518006,1.14950487990897,4.62731410949403,2.86216126360609,0.569212969109448,0.587237189370939,0.382273228125229,0,0,0.526768169550154,1.96709770113833,1.17903228824749,2.46721798799411,7.69057878797119,3.58514493296949,4.73447805734733,3.89653456815823,4.79064964606246,2.06224135232386,2.21533894583621,4.87446954777028,5.63601806792971,7.67350150603282,6.41307827954337,8.5668505513613,5.21645554323094,3.85545064221357,2.40786745280742,5.22677619024884,3.51258962362455,3.44898444241729,1.37450978193052,2.27717722817553,4.45991580053735,5.85975108470777,4.75226022224187,3.61380285786655,2.94369205655162,2.49861453104692,2.36777252044017,3.28451198768419,2.01606743224732,0.534880391567015,1.88271725047639,0,0,0,0,0,0,0,0,0,0,0.175669571386252,0.654895377488563,0,0.370784442784429,0,0.870648686496336,1.72845348674525,1.19245312152671,1.14398982156026,1.11437250398869,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0,0,0,0,0,0,1.53316637465883,0,0,0,0,0,0,0,0.132409180813219,0.286836620748814,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0.204154171254893,0.245668634623536,0.516628905878827,0,0,0,0,0,0.250237039743928,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0.0974370051611986,0,0,0.484938170456436,0,0,0,0,0,0,0.243947412259191,0,0,0.207322110030741,0,0,0,0,1.38134921352481,0.928735856063958,0,0.236613600079688,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,0.882926198829301,0.122988438543114,0,0.329250856225877,0,0.100528972411631,0.0925884451585296,0,1.03993478527958,0,0,0,0.144366447761074,0,0,0,0.858486162094873,0.984868024349589,0,0.445893486866185,0,0,0,0,0,0.383382679165211,0.492663237895943,1.76096868026452,1.4512968087854,0.576479813667846,2.01987893482208,0.063497894292169,0,0,1.71072446022705,0.205654985406647,0.600686115687835,0.857479297891735,0,0,0.07333828582095,0,3.57656445851882,0,0,0,0.257207374262142,0,0,0,0.542621605391443,0,0.325736184293735,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,3.6988097517864,0.788123040807709,0.862510299438069,2.18183161675572,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0.300946099727719,0,0,0,0,0.0868836144680828,0,0,1.44737618286021,1.2942852049117,1.60091336705167,0,0,0.30239029332968,0,0.153461973288062,0,0.128139149255701,0,0,0,0,0,0.164254312027618,0,0,0.120859449591622,0.40101294060657,0.184161977871793,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0.219259876645935,0,0,0,0,0.824328093181778,0,0.082509499920588,0,0,0,0,0.154048617114644,0,0,0.107420244868274,0,0.255679882248303,0.0890320356467374,0,0,0.382838137483752,0.2023155617111,0,0,0,0,0,0,0,0.143124886741991,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,1.13008116620243,0,0,0,1.15755106853338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.941438007767792,0,0,0.443430153536676,0,2.53723804616085,0.764637207142375,3.98753031021914,2.38231775457789,2.87953591160336,5.18778648954174,4.32025149790492,3.17250070517708,0,0,0,0.371606350251437,0.432807638929335,0.0711418433484141,0.159426272728822,1.39705560002972,0.5745161103971,0.423347165447766,0.973865820823666,0.280797178113459,0.912938716132769,0.313359791546046,2.50634477090067,0.169291777801603,0.481764225311099,1.21079824314629,0,0.687010689511529,1.22896305723383,0.894704431569664,1.50164227540718,0.390776190804081,0.835218521685727,0,0,0.33307196799782,0,1.49712432326576,0,1.45632626099416,0.66866030566487,0,0.47748896947538,0,0,0.994147647766298,2.53204949538923,0.111308705022906,0.16480387422676,0,1.19548792950642,0.276283915531148,0,0,0.246169610922139,0,0.0898683511473268,0.179021174675609,3.5810065915881,0.197286811273867,4.7896618469388,0,0.969332746095218,0.74214478529481,0,0,0.262379999988587,1.44999915086959,0.227586896570999,0,0,0,0,0,2.65722415744152,1.5677537021303,3.05163472634166,1.99042667876204,1.18219047581419,0.219385397153973,0.10893846351899,0,0.461701551022782,0,0,0,0.651884231532048,0,0,0,0,0.31396051279005,0.166211681900156,0,0.392125068635479,0,0,0,0.421996129056054,0,0.141353071433941,0.432777279484182,1.99052386215701,0.884575645033392,1.83309043480088,0.889563386041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| ||
|short_description=p@chr16:3179653..3179678,- | |short_description=p@chr16:3179653..3179678,- | ||
}} | }} |
Latest revision as of 08:33, 25 July 2015
Short description: | p@chr16:3179653..3179678, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:3179653..3179678, - |
Coexpression cluster: | C2151_CD4_CD19_CD8_Whole_Dendritic_Neutrophils_Eosinophils |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.06e-24 | 18 |
alpha-beta T cell | 1.06e-24 | 18 |
immature T cell | 1.06e-24 | 18 |
mature T cell | 1.06e-24 | 18 |
immature alpha-beta T cell | 1.06e-24 | 18 |
lymphoid lineage restricted progenitor cell | 7.63e-20 | 52 |
lymphocyte | 2.70e-19 | 53 |
common lymphoid progenitor | 2.70e-19 | 53 |
T cell | 2.64e-18 | 25 |
pro-T cell | 2.64e-18 | 25 |
CD8-positive, alpha-beta T cell | 5.68e-15 | 11 |
leukocyte | 7.12e-12 | 136 |
nongranular leukocyte | 2.89e-11 | 115 |
hematopoietic lineage restricted progenitor cell | 1.85e-10 | 120 |
hematopoietic stem cell | 7.94e-10 | 168 |
CD4-positive, alpha-beta T cell | 9.02e-10 | 6 |
hematopoietic cell | 1.04e-08 | 177 |
hematopoietic oligopotent progenitor cell | 6.66e-08 | 161 |
hematopoietic multipotent progenitor cell | 6.66e-08 | 161 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.00e-13 | 114 |
blood | 5.58e-12 | 15 |
haemolymphatic fluid | 5.58e-12 | 15 |
organism substance | 5.58e-12 | 15 |
neural tube | 3.89e-10 | 56 |
neural rod | 3.89e-10 | 56 |
future spinal cord | 3.89e-10 | 56 |
neural keel | 3.89e-10 | 56 |
regional part of nervous system | 6.06e-10 | 53 |
regional part of brain | 6.06e-10 | 53 |
brain grey matter | 1.17e-09 | 34 |
gray matter | 1.17e-09 | 34 |
telencephalon | 1.77e-09 | 34 |
regional part of forebrain | 2.14e-09 | 41 |
forebrain | 2.14e-09 | 41 |
anterior neural tube | 2.14e-09 | 41 |
future forebrain | 2.14e-09 | 41 |
regional part of telencephalon | 3.42e-09 | 32 |
cerebral hemisphere | 4.28e-09 | 32 |
basal ganglion | 1.26e-07 | 9 |
nuclear complex of neuraxis | 1.26e-07 | 9 |
aggregate regional part of brain | 1.26e-07 | 9 |
collection of basal ganglia | 1.26e-07 | 9 |
cerebral subcortex | 1.26e-07 | 9 |
neural nucleus | 1.69e-07 | 9 |
nucleus of brain | 1.69e-07 | 9 |
telencephalic nucleus | 2.41e-07 | 7 |
thymus | 3.79e-07 | 4 |
hemolymphoid system gland | 3.79e-07 | 4 |
thymic region | 3.79e-07 | 4 |
pharyngeal gland | 3.79e-07 | 4 |
thymus primordium | 3.79e-07 | 4 |
neural plate | 8.02e-07 | 82 |
presumptive neural plate | 8.02e-07 | 82 |