FFCP PHASE1:Hg19::chr10:102505312..102505320,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr10:102505312..102505320,+ to FFCP PHASE1:Hg19::chr10:102505312..102505320,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5076 | |EntrezGene=5076 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8616 | |HGNC=8616 | ||
|TSSclassifier=strong | |||
|UniProt=Q02962 | |UniProt=Q02962 | ||
|association_with_transcript=-147bp_to_ENST00000355243,ENST00000361791,ENST00000370294,ENST00000370296,ENST00000428433,NM_000278,NM_003987,NM_003988,NM_003989,NM_003990,uc001krk.3,uc001krl.3,uc001krm.3,uc001krn.3,uc001kro.3,uc010qps.1_5end | |||
|cluster_id=chr10:102505312..102505320,+ | |||
|coexpression_cluster_id=C39 | |||
|description=CAGE_peak_6_at_PAX2_5end | |||
|id=chr10:102505312..102505320,+ | |||
|ontology_enrichment_celltype=CL:1000497!1.90e-19!18;CL:0002518!1.90e-19!18;CL:1000507!2.26e-18!12;CL:1000494!2.26e-18!12;CL:1000449!1.57e-13!16;CL:0002322!3.16e-08!5;CL:0000650!2.06e-07!3;CL:1000618!2.06e-07!3;CL:1001318!2.06e-07!3;CL:0002173!2.06e-07!3;CL:1000500!2.06e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:1000507;9.70e-45;10!CL:1000494;9.70e-45;10!CL:0000650;5.68e-37;2!CL:1000500;5.68e-37;2!CL:1000618;5.68e-37;2!CL:1001318;5.68e-37;2!CL:0002173;5.68e-37;2!CL:1000449;6.18e-30;15!CL:1000497;1.91e-26;17!CL:0002518;1.91e-26;17!CL:0000669;4.70e-19;4!CL:0002681;3.61e-14;12!CL:0002584;3.61e-14;12!CL:1000746;2.55e-11;7!CL:1000612;2.55e-11;7!CL:0000239;2.79e-07;3!CL:1000615;2.79e-07;3!CL:0002306;2.79e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,1.28e-44,10;CL:1000494,1.28e-44,10;CL:0000650,8.20e-37,2;CL:1000500,8.20e-37,2;CL:1000618,8.20e-37,2;CL:1001318,8.20e-37,2;CL:0002173,8.20e-37,2;CL:1000449,7.41e-30,15;CL:1000497,2.24e-26,17;CL:0002518,2.24e-26,17;CL:0000669,5.64e-19,4;CL:0002681,4.52e-14,12;CL:0002584,4.52e-14,12;CL:1000746,2.83e-11,7;CL:1000612,2.83e-11,7;CL:0000239,3.35e-07,3;CL:1000615,3.35e-07,3;CL:0002306,3.35e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0007297;1.43e-10;2!UBERON:0006241;2.79e-07;3!UBERON:0003057;2.79e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000489!3.12e-38!32;UBERON:0002113!1.86e-35!27;UBERON:0003918!1.86e-35!27;UBERON:0005095!1.86e-35!27;UBERON:0007687!1.86e-35!27;UBERON:0006554!3.31e-23!44;UBERON:0001008!1.32e-22!45;UBERON:0000058!9.08e-20!26;UBERON:0000080!1.00e-19!18;UBERON:0002120!1.00e-19!18;UBERON:0004875!1.00e-19!18;UBERON:0005721!1.00e-19!18;UBERON:0005754!1.00e-19!18;UBERON:0007297!1.00e-19!18;UBERON:0009773!2.26e-18!12;UBERON:0001231!2.26e-18!12;UBERON:0004810!2.26e-18!12;UBERON:0005172!5.97e-18!55;UBERON:0005173!5.97e-18!55;UBERON:0004876!1.38e-17!20;UBERON:0003103!1.40e-17!69;UBERON:0003887!1.14e-16!21;UBERON:0006555!1.31e-16!17;UBERON:0005103!1.31e-16!17;UBERON:0000083!1.31e-16!17;UBERON:0009201!1.31e-16!17;UBERON:0004819!1.31e-16!17;UBERON:0006553!1.31e-16!17;UBERON:0003074!1.31e-16!17;UBERON:0003060!1.31e-16!17;UBERON:0002417!8.08e-16!61;UBERON:0000916!8.08e-16!61;UBERON:0006947!3.41e-15!3;UBERON:0004054!3.41e-15!3;UBERON:0004211!1.57e-13!16;UBERON:0001285!1.57e-13!16;UBERON:0007684!1.57e-13!16;UBERON:0003220!1.57e-13!16;UBERON:0004208!1.57e-13!16;UBERON:0003064!5.33e-13!37;UBERON:0005177!1.31e-12!107;UBERON:0005904!1.65e-11!4;UBERON:0003076!2.32e-10!15;UBERON:0003057!2.32e-10!15;UBERON:0003886!4.48e-08!63;UBERON:0009569!5.75e-08!113;UBERON:0003567!2.06e-07!3;UBERON:0003838!2.06e-07!3;UBERON:0005169!2.06e-07!3;UBERON:0002321!2.06e-07!3;UBERON:0005215!2.06e-07!3;UBERON:0002303!2.06e-07!3;UBERON:0002319!2.06e-07!3;UBERON:0002240!2.72e-07!3;UBERON:0001851!3.85e-07!16;UBERON:0003135!4.82e-07!11;UBERON:0002553!4.97e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;9.70e-45;10!UBERON:0009773;9.70e-45;10!UBERON:0001231;9.70e-45;10!UBERON:0004810;9.70e-45;10!UBERON:0003567;5.68e-37;2!UBERON:0003838;5.68e-37;2!UBERON:0003586;5.68e-37;2!UBERON:0005169;5.68e-37;2!UBERON:0002321;5.68e-37;2!UBERON:0005215;5.68e-37;2!UBERON:0002303;5.68e-37;2!UBERON:0002319;5.68e-37;2!UBERON:0000489;5.31e-30;29!UBERON:0006555;6.18e-30;15!UBERON:0004819;6.18e-30;15!UBERON:0001285;6.18e-30;15!UBERON:0007684;6.18e-30;15!UBERON:0002113;7.91e-27;24!UBERON:0011143;7.91e-27;24!UBERON:0006947;3.81e-25;3!UBERON:0004054;3.81e-25;3!UBERON:0006554;1.82e-21;30!UBERON:0001008;1.82e-21;30!UBERON:0001301;8.94e-20;1!UBERON:0001000;3.25e-19;1!UBERON:0005352;3.25e-19;1!UBERON:0005904;3.91e-19;4!UBERON:0003891;4.70e-19;4!UBERON:0001225;3.61e-14;12!UBERON:0008987;3.61e-14;12!UBERON:0001851;1.82e-11;15!UBERON:0000353;1.82e-11;15!UBERON:0000074;2.55e-11;7!UBERON:0001229;2.55e-11;7!UBERON:0005172;5.89e-11;52!UBERON:0005173;5.89e-11;52!UBERON:0003103;7.71e-09;61!UBERON:0000058;3.14e-08;10!UBERON:0003135;1.46e-07;11!UBERON:0002417;1.84e-07;58!UBERON:0000916;1.84e-07;58!UBERON:0002240;2.79e-07;3!UBERON:0005174;2.79e-07;3!UBERON:0006853;2.79e-07;3!UBERON:0007685;2.79e-07;3!UBERON:0004134;2.79e-07;3!UBERON:0001137;2.79e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,1.28e-44,10;UBERON:0006555,3.58e-40,16;UBERON:0004819,3.58e-40,16;UBERON:0003567,8.20e-37,2;UBERON:0003838,8.20e-37,2;UBERON:0003586,8.20e-37,2;UBERON:0005169,8.20e-37,2;UBERON:0002321,8.20e-37,2;UBERON:0005215,8.20e-37,2;UBERON:0002303,8.20e-37,2;UBERON:0002319,8.20e-37,2;UBERON:0000489,1.51e-36,31;UBERON:0002113,1.47e-33,26;UBERON:0003918,1.47e-33,26;UBERON:0011143,1.47e-33,26;UBERON:0005095,1.47e-33,26;UBERON:0007687,1.47e-33,26;UBERON:0004211,7.41e-30,15;UBERON:0009773,7.41e-30,15;UBERON:0001231,7.41e-30,15;UBERON:0001285,7.41e-30,15;UBERON:0007684,7.41e-30,15;UBERON:0004208,7.41e-30,15;UBERON:0006947,2.64e-25,3;UBERON:0004054,2.64e-25,3;UBERON:0005103,4.82e-21,8;UBERON:0000083,4.82e-21,8;UBERON:0009201,4.82e-21,8;UBERON:0006553,4.82e-21,8;UBERON:0003074,4.82e-21,8;UBERON:0003060,4.82e-21,8;UBERON:0001301,8.95e-20,1;UBERON:0001000,1.88e-19,1;UBERON:0005352,1.88e-19,1;UBERON:0005904,2.98e-19,4;UBERON:0003891,5.64e-19,4;UBERON:0000080,8.67e-19,9;UBERON:0002120,8.67e-19,9;UBERON:0004875,8.67e-19,9;UBERON:0005721,8.67e-19,9;UBERON:0005754,8.67e-19,9;UBERON:0007297,8.67e-19,9;UBERON:0006554,1.72e-18,47;UBERON:0001008,4.23e-18,48;UBERON:0003103,1.74e-16,68;UBERON:0005172,4.62e-16,54;UBERON:0005173,4.62e-16,54;UBERON:0000058,1.24e-15,19;UBERON:0004876,1.68e-15,11;UBERON:0002417,1.99e-14,60;UBERON:0000916,1.99e-14,60;UBERON:0003887,2.88e-14,12;UBERON:0001225,4.52e-14,12;UBERON:0008987,4.52e-14,12;UBERON:0001851,2.18e-11,15;UBERON:0000353,2.18e-11,15;UBERON:0010532,2.83e-11,7;UBERON:0000074,2.83e-11,7;UBERON:0001229,2.83e-11,7;UBERON:0001230,2.83e-11,7;UBERON:0003220,2.83e-11,7;UBERON:0005749,2.83e-11,7;UBERON:0004199,2.83e-11,7;UBERON:0004209,2.83e-11,7;UBERON:0004198,2.83e-11,7;UBERON:0005177,1.97e-08,101;UBERON:0003135,1.33e-07,11;UBERON:0009569,1.46e-07,112;UBERON:0002240,3.16e-07,3;UBERON:0005174,3.16e-07,3;UBERON:0001137,3.16e-07,3;UBERON:0006853,3.35e-07,3;UBERON:0007685,3.35e-07,3;UBERON:0004134,3.35e-07,3 | |||
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|short_description=p6@PAX2 | |||
}} | }} |
Latest revision as of 22:10, 15 September 2015
Short description: | p6@PAX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_PAX2_5end |
Coexpression cluster: | C39_epididymis_ductus_seminal_testis_acute_thyroid_CD133 |
Association with transcript: | -147bp_to_ENST00000355243, ENST00000361791, ENST00000370294, ENST00000370296, ENST00000428433, NM_000278, NM_003987, NM_003988, NM_003989, NM_003990, uc001krk.3, uc001krl.3, uc001krm.3, uc001krn.3, uc001kro.3, uc010qps.1_5end |
EntrezGene: | PAX2 |
HGNC: | 8616 |
UniProt: | Q02962 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 1.28e-44 | 10 |
nephron tubule epithelial cell | 1.28e-44 | 10 |
mesangial cell | 8.20e-37 | 2 |
kidney interstitial cell | 8.20e-37 | 2 |
juxtaglomerular complex cell | 8.20e-37 | 2 |
renal interstitial pericyte | 8.20e-37 | 2 |
extraglomerular mesangial cell | 8.20e-37 | 2 |
epithelial cell of nephron | 7.41e-30 | 15 |
kidney cell | 2.24e-26 | 17 |
kidney epithelial cell | 2.24e-26 | 17 |
pericyte cell | 5.64e-19 | 4 |
kidney cortical cell | 4.52e-14 | 12 |
renal cortical epithelial cell | 4.52e-14 | 12 |
glomerular cell | 2.83e-11 | 7 |
kidney corpuscule cell | 2.83e-11 | 7 |
brush border epithelial cell | 3.35e-07 | 3 |
kidney cortex tubule cell | 3.35e-07 | 3 |
epithelial cell of proximal tubule | 3.35e-07 | 3 |