FFCP PHASE1:Hg19::chr19:13617675..13617678,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=773 | |EntrezGene=773 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1388 | |HGNC=1388 | ||
|TSSclassifier=strong | |||
|UniProt=O00555,Q9NS88,B5TYJ1 | |UniProt=O00555,Q9NS88,B5TYJ1 | ||
|association_with_transcript=-401bp_to_ENST00000325084,ENST00000360228,NM_000068,NM_001127221,NM_001127222,NM_001174080,NM_023035,uc002mwy.3,uc010dze.2_5end | |association_with_transcript=-401bp_to_ENST00000325084,ENST00000360228,NM_000068,NM_001127221,NM_001127222,NM_001174080,NM_023035,uc002mwy.3,uc010dze.2_5end | ||
|cluster_id=chr19:13617675..13617678,- | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_5_at_CACNA1A_5end | |description=CAGE_peak_5_at_CACNA1A_5end | ||
|id=chr19:13617675..13617678,- | |id=chr19:13617675..13617678,- | ||
|ontology_enrichment_celltype=CL:0002620!1.41e-09!23 | |ontology_enrichment_celltype=CL:0002620!1.41e-09!23 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.69e-15;3!UBERON:0006601;5.01e-07;82 | |||
|ontology_enrichment_disease=DOID:17!1.61e-07!5;DOID:450!1.61e-07!5;DOID:66!1.61e-07!5;DOID:423!1.61e-07!5;DOID:0080000!1.61e-07!5;DOID:11722!1.61e-07!5 | |ontology_enrichment_disease=DOID:17!1.61e-07!5;DOID:450!1.61e-07!5;DOID:66!1.61e-07!5;DOID:423!1.61e-07!5;DOID:0080000!1.61e-07!5;DOID:11722!1.61e-07!5 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!6.09e-43!57;UBERON:0005068!6.09e-43!57;UBERON:0006241!6.09e-43!57;UBERON:0007135!6.09e-43!57;UBERON:0001017!2.83e-36!82;UBERON:0002616!3.96e-36!59;UBERON:0005743!6.19e-36!86;UBERON:0000955!1.86e-33!69;UBERON:0006238!1.86e-33!69;UBERON:0000073!3.78e-33!94;UBERON:0001016!3.78e-33!94;UBERON:0001893!4.97e-32!34;UBERON:0001869!2.30e-31!32;UBERON:0002780!1.79e-30!41;UBERON:0001890!1.79e-30!41;UBERON:0006240!1.79e-30!41;UBERON:0003075!3.11e-30!86;UBERON:0007284!3.11e-30!86;UBERON:0002346!4.64e-30!90;UBERON:0002791!5.52e-30!33;UBERON:0003080!1.38e-29!42;UBERON:0002020!6.44e-29!34;UBERON:0003528!6.44e-29!34;UBERON:0002619!3.97e-28!22;UBERON:0001950!7.69e-28!20;UBERON:0000956!2.68e-24!25;UBERON:0000203!2.68e-24!25;UBERON:0007023!1.67e-20!115;UBERON:0003056!8.21e-20!61;UBERON:0000033!5.69e-18!123;UBERON:0000153!1.15e-16!129;UBERON:0007811!1.15e-16!129;UBERON:0000200!3.10e-15!6;UBERON:0000924!1.05e-14!173;UBERON:0006601!1.05e-14!173;UBERON:0004121!1.94e-14!169;UBERON:0003076!2.59e-14!15;UBERON:0003057!2.59e-14!15;UBERON:0004733!6.91e-12!12;UBERON:0002028!6.91e-12!12;UBERON:0007277!6.91e-12!12;UBERON:0000025!2.15e-11!194;UBERON:0004732!7.50e-11!13;UBERON:0001871!8.70e-11!7;UBERON:0002021!1.23e-08!5;UBERON:0000475!3.29e-08!365;UBERON:0002771!3.69e-08!3;UBERON:0001896!7.35e-08!3;UBERON:0005290!7.35e-08!3;UBERON:0010096!7.35e-08!3;UBERON:0002298!2.08e-07!8;UBERON:0004111!3.69e-07!241 | |ontology_enrichment_uberon=UBERON:0001049!6.09e-43!57;UBERON:0005068!6.09e-43!57;UBERON:0006241!6.09e-43!57;UBERON:0007135!6.09e-43!57;UBERON:0001017!2.83e-36!82;UBERON:0002616!3.96e-36!59;UBERON:0005743!6.19e-36!86;UBERON:0000955!1.86e-33!69;UBERON:0006238!1.86e-33!69;UBERON:0000073!3.78e-33!94;UBERON:0001016!3.78e-33!94;UBERON:0001893!4.97e-32!34;UBERON:0001869!2.30e-31!32;UBERON:0002780!1.79e-30!41;UBERON:0001890!1.79e-30!41;UBERON:0006240!1.79e-30!41;UBERON:0003075!3.11e-30!86;UBERON:0007284!3.11e-30!86;UBERON:0002346!4.64e-30!90;UBERON:0002791!5.52e-30!33;UBERON:0003080!1.38e-29!42;UBERON:0002020!6.44e-29!34;UBERON:0003528!6.44e-29!34;UBERON:0002619!3.97e-28!22;UBERON:0001950!7.69e-28!20;UBERON:0000956!2.68e-24!25;UBERON:0000203!2.68e-24!25;UBERON:0007023!1.67e-20!115;UBERON:0003056!8.21e-20!61;UBERON:0000033!5.69e-18!123;UBERON:0000153!1.15e-16!129;UBERON:0007811!1.15e-16!129;UBERON:0000200!3.10e-15!6;UBERON:0000924!1.05e-14!173;UBERON:0006601!1.05e-14!173;UBERON:0004121!1.94e-14!169;UBERON:0003076!2.59e-14!15;UBERON:0003057!2.59e-14!15;UBERON:0004733!6.91e-12!12;UBERON:0002028!6.91e-12!12;UBERON:0007277!6.91e-12!12;UBERON:0000025!2.15e-11!194;UBERON:0004732!7.50e-11!13;UBERON:0001871!8.70e-11!7;UBERON:0002021!1.23e-08!5;UBERON:0000475!3.29e-08!365;UBERON:0002771!3.69e-08!3;UBERON:0001896!7.35e-08!3;UBERON:0005290!7.35e-08!3;UBERON:0010096!7.35e-08!3;UBERON:0002298!2.08e-07!8;UBERON:0004111!3.69e-07!241 | ||
|ontology_enrichment_uberon_v019=UBERON:0001950;2.76e-31;20!UBERON:0002619;1.70e-28;22!UBERON:0001869;5.64e-27;32!UBERON:0000956;4.08e-25;25!UBERON:0000203;4.08e-25;25!UBERON:0001893;2.64e-24;34!UBERON:0002791;2.08e-22;32!UBERON:0003528;2.42e-22;34!UBERON:0002020;2.42e-22;34!UBERON:0001872;1.12e-19;5!UBERON:0000073;2.69e-18;53!UBERON:0002616;2.69e-18;53!UBERON:0002780;6.69e-17;41!UBERON:0001890;6.69e-17;41!UBERON:0000955;9.56e-15;68!UBERON:0001017;3.07e-12;75!UBERON:0002581;3.27e-12;1!UBERON:0002902;3.27e-12;1!UBERON:0009899;3.27e-12;1!UBERON:0002022;4.53e-12;1!UBERON:0001882;6.61e-12;1!UBERON:0007190;6.61e-12;1!UBERON:0005403;6.61e-12;1!UBERON:0001016;6.82e-12;83!UBERON:0003112;1.25e-11;1!UBERON:0011158;1.25e-11;1!UBERON:0003128;1.25e-11;1!UBERON:0001703;1.25e-11;1!UBERON:0002241;1.25e-11;1!UBERON:0002680;2.83e-11;9!UBERON:0001895;2.83e-11;9!UBERON:0002021;2.13e-09;5!UBERON:0004733;1.39e-08;12!UBERON:0002028;1.39e-08;12!UBERON:0002037;3.39e-08;6!UBERON:0000200;4.57e-08;6!UBERON:0004732;5.82e-08;13!UBERON:0007023;2.97e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000955,1.02e-31,68;UBERON:0006238,1.02e-31,68;UBERON:0001950,3.44e-31,20;UBERON:0000073,4.01e-31,53;UBERON:0002616,4.01e-31,53;UBERON:0001869,1.66e-30,32;UBERON:0001049,2.16e-29,56;UBERON:0005068,2.16e-29,56;UBERON:0006241,2.16e-29,56;UBERON:0007135,2.16e-29,56;UBERON:0001893,1.08e-28,34;UBERON:0002619,2.07e-28,22;UBERON:0001017,2.00e-26,81;UBERON:0000956,4.87e-25,25;UBERON:0000203,4.87e-25,25;UBERON:0002791,1.08e-24,32;UBERON:0002780,1.07e-23,41;UBERON:0001890,1.07e-23,41;UBERON:0003080,1.07e-23,41;UBERON:0006240,1.07e-23,41;UBERON:0001016,1.23e-23,89;UBERON:0003528,3.20e-23,34;UBERON:0002020,3.20e-23,34;UBERON:0001872,1.31e-19,5;UBERON:0003075,1.32e-19,82;UBERON:0007284,1.32e-19,82;UBERON:0007023,1.07e-18,114;UBERON:0002346,1.28e-18,86;UBERON:0003056,1.26e-15,61;UBERON:0010371,4.24e-15,104;UBERON:0010314,1.69e-13,132;UBERON:0002581,3.27e-12,1;UBERON:0002902,3.65e-12,1;UBERON:0009899,3.65e-12,1;UBERON:0002022,5.05e-12,1;UBERON:0007190,6.26e-12,1;UBERON:0001882,7.76e-12,1;UBERON:0005403,7.76e-12,1;UBERON:0003112,9.61e-12,1;UBERON:0011158,9.61e-12,1;UBERON:0003128,9.61e-12,1;UBERON:0001703,9.61e-12,1;UBERON:0002241,9.61e-12,1;UBERON:0004761,9.61e-12,1;UBERON:0009617,9.61e-12,1;UBERON:0004121,1.84e-11,171;UBERON:0000924,1.84e-11,171;UBERON:0006601,1.84e-11,171;UBERON:0002680,2.60e-11,9;UBERON:0001895,2.60e-11,9;UBERON:0010092,2.60e-11,9;UBERON:0011216,1.37e-09,223;UBERON:0002021,2.57e-09,5;UBERON:0000025,1.25e-08,192;UBERON:0004733,1.30e-08,12;UBERON:0002028,1.30e-08,12;UBERON:0007277,1.30e-08,12;UBERON:0002037,3.27e-08,6;UBERON:0006215,3.27e-08,6;UBERON:0000200,4.50e-08,6;UBERON:0004732,5.48e-08,13;UBERON:0003076,5.52e-07,15;UBERON:0003057,5.52e-07,15 | |||
|phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0.795285947051099,0,0,0,0,1.11332214173056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264818361626438,0.573673241497627,0,0,0,0.24666754841716,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0.538168907066586,0,0.211931901159562,0.600182192168805,0.309157587715317,0,0,0.675105328965065,0.389748020644795,0.252433774244115,0.368199594569197,0,0.355009592516614,0.201504196455281,0.339121184620975,0,0,0,0,0.132529768321485,0.348581828608555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368738337083406,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0.128139149255701,0,0,0,0,0,0.164254312027618,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0.267096106940212,0,0,0,0,0,0.62962469366128,0,0,0,0,0,0,0,0,0,0,0,1.27281299170375,0,0,0,0,0.404364963146632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,1.93866549219044,2.41197055220813,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,5.52896299656123,4.72876190325676,0.87754158861589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404406797884062,0,0.468528891450678,0,0,0,0,0,0.61214552326098,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,2.59574263419103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0.687697182986169,0,0,0,3.28047605953333,0,0,0,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0.387848869084652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.732157589411779,0.625954653532499,0.573409195690071,0.443716206147409,0.620964029413834,0,0,0,0,0,0,0,0,0,0,0,0,0.889811221596536,0,0,0,0,0,0.449803112163605,0,0.414706207840855,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691292180758654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,2.11956442818316,0,0.798169295285756,0.82046545696302,1.00828678488687,4.49522141017416,1.93770774758221,0,0,0,0,0,0,0,0,0,1.21023041222112,0,0,0,0,2.43135304626221,0,1.03343398250592,3.29762213008315,0,0,0,0,0,0,0.336283722218824,0,0,0,0,0,1.42736439251347,4.60409414939944,0,0,0,0.314231179832004,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785233868459781,0.297046400327086,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,3.73953196050031,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0.795285947051099,0,0,0,0,1.11332214173056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264818361626438,0.573673241497627,0,0,0,0.24666754841716,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0.538168907066586,0,0.211931901159562,0.600182192168805,0.309157587715317,0,0,0.675105328965065,0.389748020644795,0.252433774244115,0.368199594569197,0,0.355009592516614,0.201504196455281,0.339121184620975,0,0,0,0,0.132529768321485,0.348581828608555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368738337083406,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0.128139149255701,0,0,0,0,0,0.164254312027618,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0.267096106940212,0,0,0,0,0,0.62962469366128,0,0,0,0,0,0,0,0,0,0,0,1.27281299170375,0,0,0,0,0.404364963146632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,1.93866549219044,2.41197055220813,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,5.52896299656123,4.72876190325676,0.87754158861589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404406797884062,0,0.468528891450678,0,0,0,0,0,0.61214552326098,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,2.59574263419103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0.687697182986169,0,0,0,3.28047605953333,0,0,0,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0.387848869084652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.732157589411779,0.625954653532499,0.573409195690071,0.443716206147409,0.620964029413834,0,0,0,0,0,0,0,0,0,0,0,0,0.889811221596536,0,0,0,0,0,0.449803112163605,0,0.414706207840855,0,0.521745061811734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.691292180758654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,2.11956442818316,0,0.798169295285756,0.82046545696302,1.00828678488687,4.49522141017416,1.93770774758221,0,0,0,0,0,0,0,0,0,1.21023041222112,0,0,0,0,2.43135304626221,0,1.03343398250592,3.29762213008315,0,0,0,0,0,0,0.336283722218824,0,0,0,0,0,1.42736439251347,4.60409414939944,0,0,0,0.314231179832004,0,0,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785233868459781,0.297046400327086,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,3.73953196050031,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p5@CACNA1A | |short_description=p5@CACNA1A | ||
}} | }} |
Latest revision as of 01:16, 16 September 2015
Short description: | p5@CACNA1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_CACNA1A_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | -401bp_to_ENST00000325084, ENST00000360228, NM_000068, NM_001127221, NM_001127222, NM_001174080, NM_023035, uc002mwy.3, uc010dze.2_5end |
EntrezGene: | CACNA1A |
HGNC: | 1388 |
UniProt: | O00555Q9NS88B5TYJ1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data