FFCP PHASE1:Hg19::chr13:103249285..103249300,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7174 | |EntrezGene=7174 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12016 | |HGNC=12016 | ||
|TSSclassifier=strong | |||
|UniProt=P29144 | |UniProt=P29144 | ||
|association_with_transcript=0bp_to_NM_003291,uc001vpi.3_5end | |association_with_transcript=0bp_to_NM_003291,uc001vpi.3_5end | ||
|cluster_id=chr13:103249285..103249300,+ | |||
|description=CAGE_peak_3_at_TPP2_5end | |description=CAGE_peak_3_at_TPP2_5end | ||
|id=chr13:103249285..103249300,+ | |id=chr13:103249285..103249300,+ | ||
|ontology_enrichment_celltype=CL:0000542!8.14e-17!53;CL:0000051!8.14e-17!53;CL:0000838!2.07e-16!52;CL:0000084!3.47e-09!25;CL:0000827!3.47e-09!25;CL:0000791!1.68e-08!18;CL:0000789!1.68e-08!18;CL:0002420!1.68e-08!18;CL:0002419!1.68e-08!18;CL:0000790!1.68e-08!18;CL:0000945!5.14e-07!24;CL:0000826!5.14e-07!24 | |ontology_enrichment_celltype=CL:0000542!8.14e-17!53;CL:0000051!8.14e-17!53;CL:0000838!2.07e-16!52;CL:0000084!3.47e-09!25;CL:0000827!3.47e-09!25;CL:0000791!1.68e-08!18;CL:0000789!1.68e-08!18;CL:0002420!1.68e-08!18;CL:0002419!1.68e-08!18;CL:0000790!1.68e-08!18;CL:0000945!5.14e-07!24;CL:0000826!5.14e-07!24 | ||
|ontology_enrichment_celltype_v019=CL:0000542;8.86e-10;53!CL:0000084;2.38e-09;25!CL:0000791;1.35e-08;18!CL:0000789;1.35e-08;18!CL:0002419;1.35e-08;18!CL:0000945;6.04e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,3.90e-17,53;CL:0000051,3.90e-17,53;CL:0000838,1.01e-16,52;CL:0000084,2.40e-09,25;CL:0000827,2.40e-09,25;CL:0000791,1.20e-08,18;CL:0000789,1.20e-08,18;CL:0002420,1.20e-08,18;CL:0002419,1.20e-08,18;CL:0000790,1.20e-08,18;CL:0000945,3.95e-07,24;CL:0000826,3.95e-07,24 | |||
|ontology_enrichment_development_v019=CL:0000051;8.86e-10;53!CL:0000790;1.35e-08;18!UBERON:0006601;6.54e-07;82 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.12e-20!115;UBERON:0000073!8.61e-16!94;UBERON:0001016!8.61e-16!94;UBERON:0001017!3.19e-15!82;UBERON:0005743!3.42e-14!86;UBERON:0001049!5.41e-13!57;UBERON:0005068!5.41e-13!57;UBERON:0006241!5.41e-13!57;UBERON:0007135!5.41e-13!57;UBERON:0000955!6.42e-13!69;UBERON:0006238!6.42e-13!69;UBERON:0002780!8.05e-12!41;UBERON:0001890!8.05e-12!41;UBERON:0006240!8.05e-12!41;UBERON:0003080!1.17e-11!42;UBERON:0001893!2.58e-11!34;UBERON:0002020!3.28e-11!34;UBERON:0003528!3.28e-11!34;UBERON:0002791!6.19e-11!33;UBERON:0001869!8.03e-11!32;UBERON:0002616!2.46e-10!59;UBERON:0002346!2.17e-09!90;UBERON:0000924!3.90e-09!173;UBERON:0006601!3.90e-09!173;UBERON:0000153!5.78e-09!129;UBERON:0007811!5.78e-09!129;UBERON:0000956!1.07e-08!25;UBERON:0000203!1.07e-08!25;UBERON:0002619!2.03e-08!22;UBERON:0003075!4.34e-08!86;UBERON:0007284!4.34e-08!86;UBERON:0004121!4.54e-08!169;UBERON:0001950!1.15e-07!20;UBERON:0000033!1.69e-07!123 | |ontology_enrichment_uberon=UBERON:0007023!4.12e-20!115;UBERON:0000073!8.61e-16!94;UBERON:0001016!8.61e-16!94;UBERON:0001017!3.19e-15!82;UBERON:0005743!3.42e-14!86;UBERON:0001049!5.41e-13!57;UBERON:0005068!5.41e-13!57;UBERON:0006241!5.41e-13!57;UBERON:0007135!5.41e-13!57;UBERON:0000955!6.42e-13!69;UBERON:0006238!6.42e-13!69;UBERON:0002780!8.05e-12!41;UBERON:0001890!8.05e-12!41;UBERON:0006240!8.05e-12!41;UBERON:0003080!1.17e-11!42;UBERON:0001893!2.58e-11!34;UBERON:0002020!3.28e-11!34;UBERON:0003528!3.28e-11!34;UBERON:0002791!6.19e-11!33;UBERON:0001869!8.03e-11!32;UBERON:0002616!2.46e-10!59;UBERON:0002346!2.17e-09!90;UBERON:0000924!3.90e-09!173;UBERON:0006601!3.90e-09!173;UBERON:0000153!5.78e-09!129;UBERON:0007811!5.78e-09!129;UBERON:0000956!1.07e-08!25;UBERON:0000203!1.07e-08!25;UBERON:0002619!2.03e-08!22;UBERON:0003075!4.34e-08!86;UBERON:0007284!4.34e-08!86;UBERON:0004121!4.54e-08!169;UBERON:0001950!1.15e-07!20;UBERON:0000033!1.69e-07!123 | ||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.38e-09;34!UBERON:0002791;1.49e-09;32!UBERON:0001869;1.67e-09;32!UBERON:0003528;2.99e-09;34!UBERON:0002020;2.99e-09;34!UBERON:0002780;1.47e-08;41!UBERON:0001890;1.47e-08;41!UBERON:0000956;2.10e-08;25!UBERON:0000203;2.10e-08;25!UBERON:0002619;3.07e-08;22!UBERON:0000073;1.57e-07;53!UBERON:0002616;1.57e-07;53!UBERON:0001950;1.89e-07;20 | |||
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| ||
|short_description=p3@TPP2 | |short_description=p3@TPP2 | ||
}} | }} |
Latest revision as of 09:24, 16 September 2015
Short description: | p3@TPP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TPP2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_003291, uc001vpi.3_5end |
EntrezGene: | TPP2 |
HGNC: | 12016 |
UniProt: | P29144 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 3.90e-17 | 53 |
common lymphoid progenitor | 3.90e-17 | 53 |
lymphoid lineage restricted progenitor cell | 1.01e-16 | 52 |
T cell | 2.40e-09 | 25 |
pro-T cell | 2.40e-09 | 25 |
mature alpha-beta T cell | 1.20e-08 | 18 |
alpha-beta T cell | 1.20e-08 | 18 |
immature T cell | 1.20e-08 | 18 |
mature T cell | 1.20e-08 | 18 |
immature alpha-beta T cell | 1.20e-08 | 18 |
lymphocyte of B lineage | 3.95e-07 | 24 |
pro-B cell | 3.95e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.96e-20 | 114 |
nervous system | 3.41e-17 | 89 |
central nervous system | 1.48e-15 | 81 |
neural tube | 2.62e-13 | 56 |
neural rod | 2.62e-13 | 56 |
future spinal cord | 2.62e-13 | 56 |
neural keel | 2.62e-13 | 56 |
brain | 3.32e-13 | 68 |
future brain | 3.32e-13 | 68 |
regional part of nervous system | 9.56e-13 | 53 |
regional part of brain | 9.56e-13 | 53 |
regional part of forebrain | 4.91e-12 | 41 |
forebrain | 4.91e-12 | 41 |
anterior neural tube | 4.91e-12 | 41 |
future forebrain | 4.91e-12 | 41 |
telencephalon | 1.61e-11 | 34 |
brain grey matter | 2.06e-11 | 34 |
gray matter | 2.06e-11 | 34 |
cerebral hemisphere | 5.14e-11 | 32 |
regional part of telencephalon | 7.49e-11 | 32 |
neurectoderm | 1.37e-09 | 86 |
ectoderm-derived structure | 2.83e-09 | 171 |
ectoderm | 2.83e-09 | 171 |
presumptive ectoderm | 2.83e-09 | 171 |
cerebral cortex | 7.55e-09 | 25 |
pallium | 7.55e-09 | 25 |
organ system subdivision | 1.18e-08 | 223 |
regional part of cerebral cortex | 1.46e-08 | 22 |
neural plate | 3.06e-08 | 82 |
presumptive neural plate | 3.06e-08 | 82 |
neocortex | 8.52e-08 | 20 |
pre-chordal neural plate | 3.22e-07 | 61 |