FFCP PHASE1:Hg19::chr3:171528227..171528298,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5337 | |EntrezGene=5337 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9067 | |HGNC=9067 | ||
|TSSclassifier=strong | |||
|UniProt=Q13393,F8WBV7,Q59EA4 | |UniProt=Q13393,F8WBV7,Q59EA4 | ||
|association_with_transcript=0bp_to_ENST00000340989,ENST00000342215,ENST00000351298,ENST00000356327,ENST00000440204,ENST00000460926,ENST00000498278,NM_001130081,NM_002662_5end | |association_with_transcript=0bp_to_ENST00000340989,ENST00000342215,ENST00000351298,ENST00000356327,ENST00000440204,ENST00000460926,ENST00000498278,NM_001130081,NM_002662_5end | ||
|cluster_id=chr3:171528227..171528298,- | |||
|description=CAGE_peak_1_at_PLD1_5end | |description=CAGE_peak_1_at_PLD1_5end | ||
|id=chr3:171528227..171528298,- | |id=chr3:171528227..171528298,- | ||
|ontology_enrichment_celltype=CL:0002139;2.21e-13;24!CL:0000473;2.08e-12;39!CL:0000234;2.08e-12;39!CL:0000860;3.43e-12;33!CL:0002057;3.43e-12;33!CL:0000115;2.33e-11;36!CL:0000071;4.88e-10;18!CL:0000576;9.41e-09;48!CL:0000766;1.10e-08;69!CL:0002078;1.49e-07;45 | |ontology_enrichment_celltype=CL:0000766!9.33e-16!76;CL:0000557!1.04e-14!71;CL:0000839!1.18e-14!70;CL:0000763!5.01e-14!112;CL:0000049!5.01e-14!112;CL:0002139!2.24e-13!24;CL:0000115!6.65e-13!35;CL:0002194!1.73e-12!63;CL:0000576!1.73e-12!63;CL:0000040!1.73e-12!63;CL:0000559!1.73e-12!63;CL:0002009!5.73e-12!65;CL:0002057!8.36e-12!42;CL:0000860!2.67e-11!45;CL:0002078!1.78e-10!44;CL:0000071!4.77e-10!18;CL:0002546!4.77e-10!18;CL:0000213!6.18e-09!57;CL:0000215!6.18e-09!57 | ||
| | |ontology_enrichment_celltype_v019=CL:0002139;2.21e-13;24!CL:0000473;2.08e-12;39!CL:0000234;2.08e-12;39!CL:0000860;3.43e-12;33!CL:0002057;3.43e-12;33!CL:0000115;2.33e-11;36!CL:0000071;4.88e-10;18!CL:0000576;9.41e-09;48!CL:0000766;1.10e-08;69!CL:0002078;1.49e-07;45 | ||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.50e-16,72;CL:0000557,1.68e-15,67;CL:0000839,1.86e-15,66;CL:0000763,1.63e-14,108;CL:0000049,1.63e-14,108;CL:0000473,5.57e-14,48;CL:0000234,5.57e-14,48;CL:0002139,2.20e-13,24;CL:0002194,3.04e-13,59;CL:0000576,3.04e-13,59;CL:0000040,3.04e-13,59;CL:0000559,3.04e-13,59;CL:0000115,3.42e-13,36;CL:0002009,1.15e-12,61;CL:0000860,8.24e-12,42;CL:0002057,8.24e-12,42;CL:0002078,9.25e-11,45;CL:0000071,4.72e-10,18;CL:0002546,4.72e-10,18;CL:0000213,3.36e-09,58;CL:0000215,3.36e-09,58 | |||
|ontology_enrichment_development_v019=CL:0002546;4.88e-10;18!CL:0002057;4.05e-09;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0004638;4.88e-10;18!UBERON:0001986;4.88e-10;18!UBERON:0004852;4.88e-10;18!UBERON:0000487;3.24e-07;22 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!6.88e-14!115;UBERON:0004111!1.04e-13!241;UBERON:0000467!1.24e-12!625;UBERON:0003081!1.92e-12!216;UBERON:0000480!2.77e-12!626;UBERON:0002050!5.11e-12!605;UBERON:0005423!5.11e-12!605;UBERON:0002371!6.59e-12!80;UBERON:0000923!8.35e-12!604;UBERON:0005291!8.35e-12!604;UBERON:0006598!8.35e-12!604;UBERON:0002532!8.35e-12!604;UBERON:0007023!9.55e-12!115;UBERON:0000025!1.51e-11!194;UBERON:0000468!2.33e-11!659;UBERON:0000922!3.63e-11!612;UBERON:0002193!4.03e-11!112;UBERON:0001474!7.78e-11!86;UBERON:0000062!2.00e-10!511;UBERON:0001986!4.77e-10!18;UBERON:0004638!4.77e-10!18;UBERON:0004852!4.77e-10!18;UBERON:0000477!5.63e-10!286;UBERON:0002390!1.88e-09!102;UBERON:0003061!1.88e-09!102;UBERON:0004765!2.20e-09!101;UBERON:0001434!2.20e-09!101;UBERON:0001049!1.36e-07!57;UBERON:0005068!1.36e-07!57;UBERON:0006241!1.36e-07!57;UBERON:0007135!1.36e-07!57;UBERON:0000487!2.69e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;4.88e-10;18!UBERON:0001986;4.88e-10;18!UBERON:0004852;4.88e-10;18!UBERON:0000487;3.24e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,2.94e-14,203;UBERON:0004111,1.06e-13,240;UBERON:0002050,1.57e-12,564;UBERON:0002371,1.82e-12,76;UBERON:0000923,2.12e-12,560;UBERON:0010316,2.12e-12,560;UBERON:0005291,2.12e-12,560;UBERON:0006598,2.12e-12,560;UBERON:0010317,2.12e-12,560;UBERON:0002532,2.12e-12,560;UBERON:0002405,2.78e-12,93;UBERON:0005423,7.33e-12,581;UBERON:0002193,1.58e-11,108;UBERON:0000025,1.72e-11,192;UBERON:0007023,1.92e-11,114;UBERON:0004765,1.95e-11,90;UBERON:0001474,2.88e-11,82;UBERON:0000922,4.62e-11,592;UBERON:0001434,4.43e-10,100;UBERON:0004638,4.72e-10,18;UBERON:0001986,4.72e-10,18;UBERON:0004852,4.72e-10,18;UBERON:0002390,7.85e-10,98;UBERON:0003061,7.85e-10,98;UBERON:0001049,2.04e-07,56;UBERON:0005068,2.04e-07,56;UBERON:0006241,2.04e-07,56;UBERON:0007135,2.04e-07,56;UBERON:0000487,2.93e-07,22 | |||
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| ||
|short_description=p1@PLD1 | |short_description=p1@PLD1 | ||
}} | }} |
Latest revision as of 17:33, 16 September 2015
Short description: | p1@PLD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PLD1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000340989, ENST00000342215, ENST00000351298, ENST00000356327, ENST00000440204, ENST00000460926, ENST00000498278, NM_001130081, NM_002662_5end |
EntrezGene: | PLD1 |
HGNC: | 9067 |
UniProt: | Q13393F8WBV7Q59EA4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.50e-16 | 72 |
granulocyte monocyte progenitor cell | 1.68e-15 | 67 |
myeloid lineage restricted progenitor cell | 1.86e-15 | 66 |
myeloid cell | 1.63e-14 | 108 |
common myeloid progenitor | 1.63e-14 | 108 |
defensive cell | 5.57e-14 | 48 |
phagocyte | 5.57e-14 | 48 |
endothelial cell of vascular tree | 2.20e-13 | 24 |
monopoietic cell | 3.04e-13 | 59 |
monocyte | 3.04e-13 | 59 |
monoblast | 3.04e-13 | 59 |
promonocyte | 3.04e-13 | 59 |
endothelial cell | 3.42e-13 | 36 |
macrophage dendritic cell progenitor | 1.15e-12 | 61 |
classical monocyte | 8.24e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.24e-12 | 42 |
meso-epithelial cell | 9.25e-11 | 45 |
blood vessel endothelial cell | 4.72e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.72e-10 | 18 |
lining cell | 3.36e-09 | 58 |
barrier cell | 3.36e-09 | 58 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 2.94e-14 | 203 |
anatomical conduit | 1.06e-13 | 240 |
embryonic structure | 1.57e-12 | 564 |
bone marrow | 1.82e-12 | 76 |
germ layer | 2.12e-12 | 560 |
germ layer / neural crest | 2.12e-12 | 560 |
embryonic tissue | 2.12e-12 | 560 |
presumptive structure | 2.12e-12 | 560 |
germ layer / neural crest derived structure | 2.12e-12 | 560 |
epiblast (generic) | 2.12e-12 | 560 |
immune system | 2.78e-12 | 93 |
developing anatomical structure | 7.33e-12 | 581 |
hemolymphoid system | 1.58e-11 | 108 |
tube | 1.72e-11 | 192 |
adult organism | 1.92e-11 | 114 |
skeletal element | 1.95e-11 | 90 |
bone element | 2.88e-11 | 82 |
embryo | 4.62e-11 | 592 |
skeletal system | 4.43e-10 | 100 |
blood vessel endothelium | 4.72e-10 | 18 |
endothelium | 4.72e-10 | 18 |
cardiovascular system endothelium | 4.72e-10 | 18 |
hematopoietic system | 7.85e-10 | 98 |
blood island | 7.85e-10 | 98 |
neural tube | 2.04e-07 | 56 |
neural rod | 2.04e-07 | 56 |
future spinal cord | 2.04e-07 | 56 |
neural keel | 2.04e-07 | 56 |
simple squamous epithelium | 2.93e-07 | 22 |