FFCP PHASE1:Hg19::chr1:249132556..249132573,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:249132556..249132573,+
|short_description=p3@ZNF672
|description=CAGE_peak_3_at_ZNF672_5end
|association_with_transcript=26bp_to_ENST00000505503,NM_024836,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79894 | |EntrezGene=79894 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26179 | |HGNC=26179 | ||
|TSSclassifier=strong | |||
|UniProt=Q499Z4 | |UniProt=Q499Z4 | ||
|association_with_transcript=26bp_to_ENST00000505503,NM_024836,uc001iex.2_5end | |||
|cluster_id=chr1:249132556..249132573,+ | |||
|description=CAGE_peak_3_at_ZNF672_5end | |||
|id=chr1:249132556..249132573,+ | |||
|ontology_enrichment_celltype=CL:0000766!1.88e-25!76;CL:0000557!1.96e-25!71;CL:0002194!9.32e-25!63;CL:0000576!9.32e-25!63;CL:0000040!9.32e-25!63;CL:0000559!9.32e-25!63;CL:0000839!1.02e-24!70;CL:0002009!2.81e-24!65;CL:0000860!5.52e-22!45;CL:0002057!1.33e-21!42;CL:0000763!6.06e-09!112;CL:0000049!6.06e-09!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.08e-20;33!CL:0002057;6.08e-20;33!CL:0000473;2.89e-18;39!CL:0000234;2.89e-18;39!CL:0000576;1.32e-16;48!CL:0000766;1.98e-12;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.89e-26,72;CL:0000557,3.77e-26,67;CL:0000839,9.44e-26,66;CL:0002194,1.65e-25,59;CL:0000576,1.65e-25,59;CL:0000040,1.65e-25,59;CL:0000559,1.65e-25,59;CL:0002009,8.18e-25,61;CL:0000473,3.46e-24,48;CL:0000234,3.46e-24,48;CL:0000860,4.12e-22,42;CL:0002057,4.12e-22,42;CL:0000763,2.17e-09,108;CL:0000049,2.17e-09,108 | |||
|ontology_enrichment_development_v019=CL:0002057;2.89e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000480!1.48e-28!626;UBERON:0000467!1.91e-28!625;UBERON:0000922!1.02e-24!612;UBERON:0000062!1.35e-24!511;UBERON:0000468!1.66e-24!659;UBERON:0000923!1.70e-24!604;UBERON:0005291!1.70e-24!604;UBERON:0006598!1.70e-24!604;UBERON:0002532!1.70e-24!604;UBERON:0002050!2.22e-24!605;UBERON:0005423!2.22e-24!605;UBERON:0002371!3.11e-23!80;UBERON:0001474!3.05e-22!86;UBERON:0002390!1.94e-21!102;UBERON:0003061!1.94e-21!102;UBERON:0002193!2.67e-21!112;UBERON:0002405!4.63e-20!115;UBERON:0003081!1.32e-19!216;UBERON:0000926!1.43e-16!448;UBERON:0004120!1.43e-16!448;UBERON:0006603!1.43e-16!448;UBERON:0004765!1.43e-16!101;UBERON:0001434!1.43e-16!101;UBERON:0007023!1.37e-15!115;UBERON:0002204!7.22e-11!167;UBERON:0004111!3.96e-10!241;UBERON:0000025!1.65e-09!194;UBERON:0000477!1.90e-08!286;UBERON:0003075!3.50e-07!86;UBERON:0007284!3.50e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.55e-23,76;UBERON:0001474,2.20e-22,82;UBERON:0000922,6.42e-22,592;UBERON:0002390,1.93e-21,98;UBERON:0003061,1.93e-21,98;UBERON:0005423,2.43e-21,581;UBERON:0002193,3.06e-21,108;UBERON:0002405,1.49e-19,93;UBERON:0004765,1.86e-19,90;UBERON:0000923,1.51e-18,560;UBERON:0010316,1.51e-18,560;UBERON:0005291,1.51e-18,560;UBERON:0006598,1.51e-18,560;UBERON:0010317,1.51e-18,560;UBERON:0002532,1.51e-18,560;UBERON:0002050,2.51e-18,564;UBERON:0003081,1.43e-17,203;UBERON:0007023,4.49e-16,114;UBERON:0001434,7.79e-15,100;UBERON:0004111,6.58e-10,240;UBERON:0000926,1.55e-09,315;UBERON:0004120,1.55e-09,315;UBERON:0006603,1.55e-09,315;UBERON:0000025,1.58e-09,192;UBERON:0002204,7.93e-09,167;UBERON:0003075,6.50e-08,82;UBERON:0007284,6.50e-08,82;UBERON:0001049,8.39e-07,56;UBERON:0005068,8.39e-07,56;UBERON:0006241,8.39e-07,56;UBERON:0007135,8.39e-07,56 | |||
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| ||
|short_description=p3@ZNF672 | |||
}} | }} |
Latest revision as of 01:23, 17 September 2015
Short description: | p3@ZNF672 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ZNF672_5end |
Coexpression cluster: | NA |
Association with transcript: | 26bp_to_ENST00000505503, NM_024836, uc001iex.2_5end |
EntrezGene: | ZNF672 |
HGNC: | 26179 |
UniProt: | Q499Z4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.89e-26 | 72 |
granulocyte monocyte progenitor cell | 3.77e-26 | 67 |
myeloid lineage restricted progenitor cell | 9.44e-26 | 66 |
monopoietic cell | 1.65e-25 | 59 |
monocyte | 1.65e-25 | 59 |
monoblast | 1.65e-25 | 59 |
promonocyte | 1.65e-25 | 59 |
macrophage dendritic cell progenitor | 8.18e-25 | 61 |
defensive cell | 3.46e-24 | 48 |
phagocyte | 3.46e-24 | 48 |
classical monocyte | 4.12e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.12e-22 | 42 |
myeloid cell | 2.17e-09 | 108 |
common myeloid progenitor | 2.17e-09 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.55e-23 | 76 |
bone element | 2.20e-22 | 82 |
embryo | 6.42e-22 | 592 |
hematopoietic system | 1.93e-21 | 98 |
blood island | 1.93e-21 | 98 |
developing anatomical structure | 2.43e-21 | 581 |
hemolymphoid system | 3.06e-21 | 108 |
immune system | 1.49e-19 | 93 |
skeletal element | 1.86e-19 | 90 |
germ layer | 1.51e-18 | 560 |
germ layer / neural crest | 1.51e-18 | 560 |
embryonic tissue | 1.51e-18 | 560 |
presumptive structure | 1.51e-18 | 560 |
germ layer / neural crest derived structure | 1.51e-18 | 560 |
epiblast (generic) | 1.51e-18 | 560 |
embryonic structure | 2.51e-18 | 564 |
lateral plate mesoderm | 1.43e-17 | 203 |
adult organism | 4.49e-16 | 114 |
skeletal system | 7.79e-15 | 100 |
anatomical conduit | 6.58e-10 | 240 |
mesoderm | 1.55e-09 | 315 |
mesoderm-derived structure | 1.55e-09 | 315 |
presumptive mesoderm | 1.55e-09 | 315 |
tube | 1.58e-09 | 192 |
musculoskeletal system | 7.93e-09 | 167 |
neural plate | 6.50e-08 | 82 |
presumptive neural plate | 6.50e-08 | 82 |
neural tube | 8.39e-07 | 56 |
neural rod | 8.39e-07 | 56 |
future spinal cord | 8.39e-07 | 56 |
neural keel | 8.39e-07 | 56 |