FFCP PHASE1:Hg19::chr2:50575000..50575009,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9378 | |EntrezGene=9378 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8008 | |HGNC=8008 | ||
|TSSclassifier=strong | |||
|UniProt=A4FVB9,A7E294,P58400,Q9ULB1 | |UniProt=A4FVB9,A7E294,P58400,Q9ULB1 | ||
|association_with_transcript=-106bp_to_NM_138735,uc010fbp.2_5end | |association_with_transcript=-106bp_to_NM_138735,uc010fbp.2_5end | ||
|cluster_id=chr2:50575000..50575009,- | |||
|coexpression_cluster_id=C1910 | |coexpression_cluster_id=C1910 | ||
|description=CAGE_peak_26_at_NRXN1_5end | |description=CAGE_peak_26_at_NRXN1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.90e-08;82 | |ontology_enrichment_development_v019=UBERON:0006601;3.90e-08;82 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002619!2.89e-89!22;UBERON:0001950!6.49e-81!20;UBERON:0000956!2.47e-78!25;UBERON:0000203!2.47e-78!25;UBERON:0002780!3.66e-76!41;UBERON:0001890!3.66e-76!41;UBERON:0006240!3.66e-76!41;UBERON:0003080!3.10e-74!42;UBERON:0001893!1.63e-73!34;UBERON:0001869!2.39e-72!32;UBERON:0001049!5.56e-70!57;UBERON:0005068!5.56e-70!57;UBERON:0006241!5.56e-70!57;UBERON:0007135!5.56e-70!57;UBERON:0002791!1.30e-69!33;UBERON:0002020!1.65e-67!34;UBERON:0003528!1.65e-67!34;UBERON:0002616!2.11e-67!59;UBERON:0000955!1.21e-63!69;UBERON:0006238!1.21e-63!69;UBERON:0005743!2.80e-63!86;UBERON:0001017!4.39e-63!82;UBERON:0000073!1.20e-56!94;UBERON:0001016!1.20e-56!94;UBERON:0003056!4.47e-53!61;UBERON:0003075!2.54e-50!86;UBERON:0007284!2.54e-50!86;UBERON:0002346!9.05e-48!90;UBERON:0000033!2.83e-37!123;UBERON:0007023!5.32e-36!115;UBERON:0000153!3.36e-35!129;UBERON:0007811!3.36e-35!129;UBERON:0004121!3.73e-30!169;UBERON:0000924!2.81e-29!173;UBERON:0006601!2.81e-29!173;UBERON:0000200!8.43e-27!6;UBERON:0001871!1.18e-26!7;UBERON:0002021!6.24e-23!5;UBERON:0001872!5.17e-22!5;UBERON:0000349!9.50e-22!5;UBERON:0000025!1.29e-15!194;UBERON:0002771!3.77e-14!3;UBERON:0004111!3.57e-11!241;UBERON:0000064!6.36e-11!219;UBERON:0001870!5.19e-10!2;UBERON:0001876!7.07e-10!2;UBERON:0001954!7.07e-10!2;UBERON:0003022!7.07e-10!2;UBERON:0002421!7.07e-10!2;UBERON:0002600!7.07e-10!2;UBERON:0001905!8.82e-10!2;UBERON:0002757!8.82e-10!2;UBERON:0010134!8.82e-10!2;UBERON:0002784!8.82e-10!2;UBERON:0005408!8.82e-10!2;UBERON:0001899!8.82e-10!2;UBERON:0000477!4.30e-09!286;UBERON:0000483!1.29e-08!309;UBERON:0000119!1.84e-08!312;UBERON:0000475!1.90e-07!365 | |ontology_enrichment_uberon=UBERON:0002619!2.89e-89!22;UBERON:0001950!6.49e-81!20;UBERON:0000956!2.47e-78!25;UBERON:0000203!2.47e-78!25;UBERON:0002780!3.66e-76!41;UBERON:0001890!3.66e-76!41;UBERON:0006240!3.66e-76!41;UBERON:0003080!3.10e-74!42;UBERON:0001893!1.63e-73!34;UBERON:0001869!2.39e-72!32;UBERON:0001049!5.56e-70!57;UBERON:0005068!5.56e-70!57;UBERON:0006241!5.56e-70!57;UBERON:0007135!5.56e-70!57;UBERON:0002791!1.30e-69!33;UBERON:0002020!1.65e-67!34;UBERON:0003528!1.65e-67!34;UBERON:0002616!2.11e-67!59;UBERON:0000955!1.21e-63!69;UBERON:0006238!1.21e-63!69;UBERON:0005743!2.80e-63!86;UBERON:0001017!4.39e-63!82;UBERON:0000073!1.20e-56!94;UBERON:0001016!1.20e-56!94;UBERON:0003056!4.47e-53!61;UBERON:0003075!2.54e-50!86;UBERON:0007284!2.54e-50!86;UBERON:0002346!9.05e-48!90;UBERON:0000033!2.83e-37!123;UBERON:0007023!5.32e-36!115;UBERON:0000153!3.36e-35!129;UBERON:0007811!3.36e-35!129;UBERON:0004121!3.73e-30!169;UBERON:0000924!2.81e-29!173;UBERON:0006601!2.81e-29!173;UBERON:0000200!8.43e-27!6;UBERON:0001871!1.18e-26!7;UBERON:0002021!6.24e-23!5;UBERON:0001872!5.17e-22!5;UBERON:0000349!9.50e-22!5;UBERON:0000025!1.29e-15!194;UBERON:0002771!3.77e-14!3;UBERON:0004111!3.57e-11!241;UBERON:0000064!6.36e-11!219;UBERON:0001870!5.19e-10!2;UBERON:0001876!7.07e-10!2;UBERON:0001954!7.07e-10!2;UBERON:0003022!7.07e-10!2;UBERON:0002421!7.07e-10!2;UBERON:0002600!7.07e-10!2;UBERON:0001905!8.82e-10!2;UBERON:0002757!8.82e-10!2;UBERON:0010134!8.82e-10!2;UBERON:0002784!8.82e-10!2;UBERON:0005408!8.82e-10!2;UBERON:0001899!8.82e-10!2;UBERON:0000477!4.30e-09!286;UBERON:0000483!1.29e-08!309;UBERON:0000119!1.84e-08!312;UBERON:0000475!1.90e-07!365 | ||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.13e-99;22!UBERON:0001950;6.82e-95;20!UBERON:0000956;5.76e-88;25!UBERON:0000203;5.76e-88;25!UBERON:0001869;3.21e-67;32!UBERON:0001893;1.69e-61;34!UBERON:0002791;5.40e-58;32!UBERON:0003528;1.05e-54;34!UBERON:0002020;1.05e-54;34!UBERON:0002021;2.46e-52;5!UBERON:0002780;1.54e-44;41!UBERON:0001890;1.54e-44;41!UBERON:0000200;3.51e-43;6!UBERON:0001871;4.95e-37;6!UBERON:0000073;7.37e-30;53!UBERON:0002616;7.37e-30;53!UBERON:0002771;1.13e-21;2!UBERON:0000955;1.55e-21;68!UBERON:0001017;5.37e-17;75!UBERON:0001016;1.85e-13;83!UBERON:0002581;1.01e-11;1!UBERON:0002902;1.01e-11;1!UBERON:0002022;1.01e-11;1!UBERON:0009899;1.01e-11;1!UBERON:0007190;1.01e-11;1!UBERON:0000349;1.39e-09;5!UBERON:0001872;3.04e-09;5!UBERON:0001954;9.96e-07;2!UBERON:0003022;9.96e-07;2!UBERON:0002421;9.96e-07;2!UBERON:0002600;9.96e-07;2 | |ontology_enrichment_uberon_v019=UBERON:0002619;1.13e-99;22!UBERON:0001950;6.82e-95;20!UBERON:0000956;5.76e-88;25!UBERON:0000203;5.76e-88;25!UBERON:0001869;3.21e-67;32!UBERON:0001893;1.69e-61;34!UBERON:0002791;5.40e-58;32!UBERON:0003528;1.05e-54;34!UBERON:0002020;1.05e-54;34!UBERON:0002021;2.46e-52;5!UBERON:0002780;1.54e-44;41!UBERON:0001890;1.54e-44;41!UBERON:0000200;3.51e-43;6!UBERON:0001871;4.95e-37;6!UBERON:0000073;7.37e-30;53!UBERON:0002616;7.37e-30;53!UBERON:0002771;1.13e-21;2!UBERON:0000955;1.55e-21;68!UBERON:0001017;5.37e-17;75!UBERON:0001016;1.85e-13;83!UBERON:0002581;1.01e-11;1!UBERON:0002902;1.01e-11;1!UBERON:0002022;1.01e-11;1!UBERON:0009899;1.01e-11;1!UBERON:0007190;1.01e-11;1!UBERON:0000349;1.39e-09;5!UBERON:0001872;3.04e-09;5!UBERON:0001954;9.96e-07;2!UBERON:0003022;9.96e-07;2!UBERON:0002421;9.96e-07;2!UBERON:0002600;9.96e-07;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,1.06e-99,22;UBERON:0001950,6.41e-95,20;UBERON:0000956,5.46e-88,25;UBERON:0000203,5.46e-88,25;UBERON:0001869,1.69e-78,32;UBERON:0001893,6.66e-74,34;UBERON:0002780,2.53e-69,41;UBERON:0001890,2.53e-69,41;UBERON:0003080,2.53e-69,41;UBERON:0006240,2.53e-69,41;UBERON:0002791,6.19e-69,32;UBERON:0003528,6.89e-65,34;UBERON:0002020,6.89e-65,34;UBERON:0000073,1.83e-53,53;UBERON:0002616,1.83e-53,53;UBERON:0002021,3.59e-52,5;UBERON:0001049,1.54e-50,56;UBERON:0005068,1.54e-50,56;UBERON:0006241,1.54e-50,56;UBERON:0007135,1.54e-50,56;UBERON:0003056,2.70e-46,61;UBERON:0000200,3.09e-43,6;UBERON:0000955,9.24e-41,68;UBERON:0006238,9.24e-41,68;UBERON:0001871,4.11e-37,6;UBERON:0001017,4.88e-34,81;UBERON:0003075,4.88e-34,82;UBERON:0007284,4.88e-34,82;UBERON:0002346,2.26e-32,86;UBERON:0001016,1.71e-30,89;UBERON:0010371,1.92e-26,104;UBERON:0002771,9.19e-22,2;UBERON:0010314,2.14e-20,132;UBERON:0007023,5.25e-16,114;UBERON:0004121,4.91e-15,171;UBERON:0000924,4.91e-15,171;UBERON:0006601,4.91e-15,171;UBERON:0000025,2.56e-13,192;UBERON:0011216,1.51e-12,223;UBERON:0002902,5.62e-12,1;UBERON:0009899,5.62e-12,1;UBERON:0002022,6.26e-12,1;UBERON:0002581,9.61e-12,1;UBERON:0007190,1.19e-11,1;UBERON:0004111,3.57e-10,240;UBERON:0000349,1.31e-09,5;UBERON:0001872,3.44e-09,5;UBERON:0000483,1.94e-07,306;UBERON:0000119,2.43e-07,309;UBERON:0001954,9.96e-07,2;UBERON:0003022,9.96e-07,2;UBERON:0002421,9.96e-07,2;UBERON:0002600,9.96e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,2.98244294329889,0.422008249231538,0,0,4.64475897881586,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.74214478529481,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221158519862449,0,0.658156191461918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0,0,1.53036380815245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.759729551470544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.18091875923721,0.408610218334727,0,0,0,0,0,1.64023802976667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.65820453990096,1.46431517882356,0.876336514945499,0,0.110929051536852,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24432592536558,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,4.25089728976755,1.11743701340006,2.2562800066483,1.00828678488687,1.65977405914123,0.484426936895553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2156765231311,0.781078098613847,0.826747186004736,0.887821342714695,1.09394961803644,0,0,0,0,0.535701835878287,1.3451348888753,0,0,0,0,0,0,1.31545547125698,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08786384305464,2.18175345170189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.813792356631477,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,2.98244294329889,0.422008249231538,0,0,4.64475897881586,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.74214478529481,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221158519862449,0,0.658156191461918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0,0,1.53036380815245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.759729551470544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.18091875923721,0.408610218334727,0,0,0,0,0,1.64023802976667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.65820453990096,1.46431517882356,0.876336514945499,0,0.110929051536852,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24432592536558,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,4.25089728976755,1.11743701340006,2.2562800066483,1.00828678488687,1.65977405914123,0.484426936895553,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2156765231311,0.781078098613847,0.826747186004736,0.887821342714695,1.09394961803644,0,0,0,0,0.535701835878287,1.3451348888753,0,0,0,0,0,0,1.31545547125698,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08786384305464,2.18175345170189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.813792356631477,0,0,0 | ||
|short_description=p26@NRXN1 | |short_description=p26@NRXN1 | ||
}} | }} |
Latest revision as of 13:32, 17 September 2015
Short description: | p26@NRXN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_26_at_NRXN1_5end |
Coexpression cluster: | C1910_anaplastic_pineal_temporal_occipital_duodenum_brain_parietal |
Association with transcript: | -106bp_to_NM_138735, uc010fbp.2_5end |
EntrezGene: | NRXN1 |
HGNC: | 8008 |
UniProt: | A4FVB9A7E294P58400Q9ULB1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data