FFCP PHASE1:Hg19::chr2:61698197..61698240,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:61698197..61698240,- to FFCP PHASE1:Hg19::chr2:61698197..61698240,-: NSchange) |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9736 | |EntrezGene=9736 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20066 | |HGNC=20066 | ||
|TSSclassifier=strong | |||
|UniProt=Q70CQ2 | |UniProt=Q70CQ2 | ||
|association_with_transcript=-293bp_to_ENST00000398571_5end | |||
|cluster_id=chr2:61698197..61698240,- | |||
|description=CAGE_peak_1_at_USP34_5end | |||
|id=chr2:61698197..61698240,- | |||
|ontology_enrichment_celltype=CL:0000037!7.12e-22!172;CL:0000566!7.12e-22!172;CL:0002032!3.02e-20!165;CL:0000837!3.02e-20!165;CL:0000738!2.54e-19!140;CL:0000988!1.60e-18!182;CL:0002087!1.14e-17!119;CL:0002031!2.16e-17!124;CL:0000763!2.47e-11!112;CL:0000049!2.47e-11!112;CL:0000766!1.12e-09!76;CL:0000838!1.37e-09!52;CL:0002057!1.49e-09!42;CL:0000860!2.07e-09!45;CL:0000557!2.59e-09!71;CL:0000542!3.28e-09!53;CL:0000051!3.28e-09!53;CL:0000839!2.63e-08!70;CL:0002009!3.64e-08!65;CL:0002194!7.00e-08!63;CL:0000576!7.00e-08!63;CL:0000040!7.00e-08!63;CL:0000559!7.00e-08!63;CL:0000791!1.71e-07!18;CL:0000789!1.71e-07!18;CL:0002420!1.71e-07!18;CL:0002419!1.71e-07!18;CL:0000790!1.71e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.89e-08;33!CL:0002057;2.89e-08;33!CL:0000791;1.69e-07;18!CL:0000789;1.69e-07;18!CL:0002419;1.69e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.45e-21,168;CL:0002032,6.02e-20,161;CL:0000837,6.02e-20,161;CL:0000738,4.68e-19,136;CL:0000988,9.36e-19,177;CL:0002087,1.95e-17,115;CL:0002031,3.80e-17,120;CL:0000763,4.44e-11,108;CL:0000049,4.44e-11,108;CL:0000838,1.37e-09,52;CL:0000860,1.49e-09,42;CL:0002057,1.49e-09,42;CL:0000766,1.83e-09,72;CL:0000542,3.28e-09,53;CL:0000051,3.28e-09,53;CL:0000557,4.17e-09,67;CL:0000839,4.35e-08,66;CL:0002009,5.90e-08,61;CL:0000473,6.78e-08,48;CL:0000234,6.78e-08,48;CL:0002194,1.13e-07,59;CL:0000576,1.13e-07,59;CL:0000040,1.13e-07,59;CL:0000559,1.13e-07,59;CL:0000791,1.71e-07,18;CL:0000789,1.71e-07,18;CL:0002420,1.71e-07,18;CL:0002419,1.71e-07,18;CL:0000790,1.71e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000790;1.69e-07;18!CL:0002057;4.66e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.44e-27!115;UBERON:0001049!2.40e-17!57;UBERON:0005068!2.40e-17!57;UBERON:0006241!2.40e-17!57;UBERON:0007135!2.40e-17!57;UBERON:0003080!8.45e-16!42;UBERON:0002780!9.04e-16!41;UBERON:0001890!9.04e-16!41;UBERON:0006240!9.04e-16!41;UBERON:0000955!6.92e-15!69;UBERON:0006238!6.92e-15!69;UBERON:0002616!7.26e-15!59;UBERON:0001017!6.48e-14!82;UBERON:0002020!5.03e-13!34;UBERON:0003528!5.03e-13!34;UBERON:0005743!1.54e-12!86;UBERON:0000073!2.49e-12!94;UBERON:0001016!2.49e-12!94;UBERON:0001893!2.69e-12!34;UBERON:0002791!3.88e-12!33;UBERON:0001869!8.16e-12!32;UBERON:0002619!4.11e-10!22;UBERON:0003075!1.54e-09!86;UBERON:0007284!1.54e-09!86;UBERON:0002390!2.64e-09!102;UBERON:0003061!2.64e-09!102;UBERON:0002346!3.37e-09!90;UBERON:0001950!4.05e-09!20;UBERON:0000956!4.76e-09!25;UBERON:0000203!4.76e-09!25;UBERON:0002193!1.76e-08!112;UBERON:0000153!5.76e-08!129;UBERON:0007811!5.76e-08!129;UBERON:0001474!8.03e-08!86;UBERON:0003056!1.04e-07!61;UBERON:0002371!4.44e-07!80;UBERON:0000033!5.24e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;8.95e-12;41!UBERON:0001890;8.95e-12;41!UBERON:0003528;3.25e-11;34!UBERON:0002020;3.25e-11;34!UBERON:0002791;5.09e-11;32!UBERON:0001869;9.64e-11;32!UBERON:0001893;2.14e-10;34!UBERON:0002619;3.80e-10;22!UBERON:0000073;4.86e-10;53!UBERON:0002616;4.86e-10;53!UBERON:0001950;3.84e-09;20!UBERON:0000956;4.59e-09;25!UBERON:0000203;4.59e-09;25!UBERON:0007023;1.69e-08;114!UBERON:0000955;1.41e-07;68!UBERON:0001016;1.66e-07;83!UBERON:0001017;4.62e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.45e-27,114;UBERON:0001049,2.88e-17,56;UBERON:0005068,2.88e-17,56;UBERON:0006241,2.88e-17,56;UBERON:0007135,2.88e-17,56;UBERON:0000073,2.32e-16,53;UBERON:0002616,2.32e-16,53;UBERON:0002780,9.04e-16,41;UBERON:0001890,9.04e-16,41;UBERON:0003080,9.04e-16,41;UBERON:0006240,9.04e-16,41;UBERON:0000955,8.84e-15,68;UBERON:0006238,8.84e-15,68;UBERON:0001017,8.47e-14,81;UBERON:0001016,1.77e-13,89;UBERON:0003528,5.03e-13,34;UBERON:0002020,5.03e-13,34;UBERON:0001893,2.69e-12,34;UBERON:0002791,4.17e-12,32;UBERON:0001869,8.15e-12,32;UBERON:0002619,4.11e-10,22;UBERON:0003075,7.00e-10,82;UBERON:0007284,7.00e-10,82;UBERON:0002346,1.65e-09,86;UBERON:0001950,4.05e-09,20;UBERON:0002390,4.66e-09,98;UBERON:0003061,4.66e-09,98;UBERON:0000956,4.76e-09,25;UBERON:0000203,4.76e-09,25;UBERON:0002193,3.16e-08,108;UBERON:0003056,5.19e-08,61;UBERON:0001474,1.39e-07,82;UBERON:0002405,4.27e-07,93;UBERON:0002371,7.62e-07,76 | |||
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| ||
|short_description=p1@USP34 | |||
}} | }} |
Latest revision as of 21:19, 17 September 2015
Short description: | p1@USP34 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_USP34_5end |
Coexpression cluster: | NA |
Association with transcript: | -293bp_to_ENST00000398571_5end |
EntrezGene: | USP34 |
HGNC: | 20066 |
UniProt: | Q70CQ2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 5.45e-27 | 114 |
neural tube | 2.88e-17 | 56 |
neural rod | 2.88e-17 | 56 |
future spinal cord | 2.88e-17 | 56 |
neural keel | 2.88e-17 | 56 |
regional part of nervous system | 2.32e-16 | 53 |
regional part of brain | 2.32e-16 | 53 |
regional part of forebrain | 9.04e-16 | 41 |
forebrain | 9.04e-16 | 41 |
anterior neural tube | 9.04e-16 | 41 |
future forebrain | 9.04e-16 | 41 |
brain | 8.84e-15 | 68 |
future brain | 8.84e-15 | 68 |
central nervous system | 8.47e-14 | 81 |
nervous system | 1.77e-13 | 89 |
brain grey matter | 5.03e-13 | 34 |
gray matter | 5.03e-13 | 34 |
telencephalon | 2.69e-12 | 34 |
regional part of telencephalon | 4.17e-12 | 32 |
cerebral hemisphere | 8.15e-12 | 32 |
regional part of cerebral cortex | 4.11e-10 | 22 |
neural plate | 7.00e-10 | 82 |
presumptive neural plate | 7.00e-10 | 82 |
neurectoderm | 1.65e-09 | 86 |
neocortex | 4.05e-09 | 20 |
hematopoietic system | 4.66e-09 | 98 |
blood island | 4.66e-09 | 98 |
cerebral cortex | 4.76e-09 | 25 |
pallium | 4.76e-09 | 25 |
hemolymphoid system | 3.16e-08 | 108 |
pre-chordal neural plate | 5.19e-08 | 61 |
bone element | 1.39e-07 | 82 |
immune system | 4.27e-07 | 93 |
bone marrow | 7.62e-07 | 76 |