FFCP PHASE1:Hg19::chr12:51985072..51985086,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6334 | |EntrezGene=6334 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10596 | |HGNC=10596 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UQD0 | |UniProt=Q9UQD0 | ||
|association_with_transcript=52bp_to_ENST00000354534,NM_014191,uc001ryw.2_5end | |association_with_transcript=52bp_to_ENST00000354534,NM_014191,uc001ryw.2_5end | ||
|cluster_id=chr12:51985072..51985086,+ | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_4_at_SCN8A_5end | |description=CAGE_peak_4_at_SCN8A_5end | ||
|id=chr12:51985072..51985086,+ | |id=chr12:51985072..51985086,+ | ||
|ontology_enrichment_celltype=CL:0002620!8.33e-12!23;CL:0000055!1.74e-08!180;CL:0000057!8.34e-08!75 | |ontology_enrichment_celltype=CL:0002620!8.33e-12!23;CL:0000055!1.74e-08!180;CL:0000057!8.34e-08!75 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.15e-26!57;UBERON:0005068!3.15e-26!57;UBERON:0006241!3.15e-26!57;UBERON:0007135!3.15e-26!57;UBERON:0001017!8.95e-26!82;UBERON:0005743!7.70e-25!86;UBERON:0000073!8.21e-25!94;UBERON:0001016!8.21e-25!94;UBERON:0001869!6.59e-23!32;UBERON:0000955!1.17e-22!69;UBERON:0006238!1.17e-22!69;UBERON:0002020!2.06e-22!34;UBERON:0003528!2.06e-22!34;UBERON:0001893!2.33e-22!34;UBERON:0002616!8.52e-22!59;UBERON:0002619!1.02e-21!22;UBERON:0002791!3.09e-21!33;UBERON:0002780!7.35e-21!41;UBERON:0001890!7.35e-21!41;UBERON:0006240!7.35e-21!41;UBERON:0003080!4.24e-20!42;UBERON:0001950!1.36e-19!20;UBERON:0000956!3.10e-18!25;UBERON:0000203!3.10e-18!25;UBERON:0003075!8.93e-16!86;UBERON:0007284!8.93e-16!86;UBERON:0002346!2.65e-15!90;UBERON:0003056!3.34e-12!61;UBERON:0000033!1.00e-10!123;UBERON:0004121!1.44e-10!169;UBERON:0000475!1.67e-10!365;UBERON:0000924!1.83e-10!173;UBERON:0006601!1.83e-10!173;UBERON:0000153!1.52e-09!129;UBERON:0007811!1.52e-09!129;UBERON:0000200!1.05e-08!6;UBERON:0007023!1.41e-07!115;UBERON:0001871!1.57e-07!7;UBERON:0003076!2.59e-07!15;UBERON:0003057!2.59e-07!15;UBERON:0001872!3.11e-07!5;UBERON:0000349!6.04e-07!5;UBERON:0002097!7.61e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;8.56e-48;22!UBERON:0001950;5.74e-46;20!UBERON:0000956;6.86e-42;25!UBERON:0000203;6.86e-42;25!UBERON:0001869;1.33e-35;32!UBERON:0001893;4.21e-34;34!UBERON:0003528;1.73e-33;34!UBERON:0002020;1.73e-33;34!UBERON:0002791;1.07e-31;32!UBERON:0000200;2.88e-31;6!UBERON:0002780;1.84e-23;41!UBERON:0001890;1.84e-23;41!UBERON:0000073;1.42e-21;53!UBERON:0002616;1.42e-21;53!UBERON:0000955;3.58e-17;68!UBERON:0001872;4.36e-17;5!UBERON:0001870;3.06e-16;3!UBERON:0001017;5.18e-15;75!UBERON:0001016;1.60e-11;83!UBERON:0002771;1.61e-11;2!UBERON:0002702;2.37e-11;2!UBERON:0002021;3.13e-10;5!UBERON:0000988;1.04e-07;3!UBERON:0001871;2.75e-07;6!UBERON:0002581;8.56e-07;1!UBERON:0007190;8.56e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,8.55e-48,22;UBERON:0001950,7.03e-46,20;UBERON:0001869,5.83e-42,32;UBERON:0000956,6.85e-42,25;UBERON:0000203,6.85e-42,25;UBERON:0001893,2.44e-39,34;UBERON:0003528,4.96e-39,34;UBERON:0002020,4.96e-39,34;UBERON:0001049,9.06e-39,56;UBERON:0005068,9.06e-39,56;UBERON:0006241,9.06e-39,56;UBERON:0007135,9.06e-39,56;UBERON:0000073,2.00e-37,53;UBERON:0002616,2.00e-37,53;UBERON:0002791,6.45e-37,32;UBERON:0002780,5.38e-36,41;UBERON:0001890,5.38e-36,41;UBERON:0003080,5.38e-36,41;UBERON:0006240,5.38e-36,41;UBERON:0000955,5.54e-34,68;UBERON:0006238,5.54e-34,68;UBERON:0000200,3.49e-31,6;UBERON:0001017,1.73e-30,81;UBERON:0001016,5.68e-27,89;UBERON:0003075,4.80e-25,82;UBERON:0007284,4.80e-25,82;UBERON:0002346,1.16e-23,86;UBERON:0003056,4.78e-23,61;UBERON:0010371,9.54e-19,104;UBERON:0007023,4.20e-17,114;UBERON:0001872,6.21e-17,5;UBERON:0001870,1.93e-16,3;UBERON:0010314,2.81e-15,132;UBERON:0004121,6.31e-13,171;UBERON:0000924,6.31e-13,171;UBERON:0006601,6.31e-13,171;UBERON:0002702,1.70e-11,2;UBERON:0002771,2.20e-11,2;UBERON:0002021,3.45e-10,5;UBERON:0000025,6.05e-10,192;UBERON:0011216,1.15e-08,223;UBERON:0004111,9.69e-08,240;UBERON:0000988,1.09e-07,3;UBERON:0001871,2.91e-07,6;UBERON:0002581,9.30e-07,1;UBERON:0007190,9.81e-07,1 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34465029290355,0,0.730310090387373,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289693037921647,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0,1.32409180813219,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0.312160076830321,0,0,0.117434498643765,0.485618833104395,0.140450806702248,0,0.122834317311768,0,1.18800285728205,0.247266929278557,0,0,0,0,0,0.438977620880838,0.612975591598039,0,0,0.538168907066586,0.427114777637135,0.847727604638247,0.900273288253207,0.309157587715317,1.54584324027377,0.18611685633159,1.85653965465393,0,1.00973509697646,0.368199594569197,0.161646056818812,0.710019185033229,0.201504196455281,0.339121184620975,0,0,0,0.121973706129595,0.265059536642971,0,0.10366105501537,0,0,0,0.643240938192885,0,0,0,0,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0.301439377059586,1.74306691720059,0.499864955910285,0,0,0,0,0,0,0.289562613335158,0.410952645100767,0.179060963239896,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0.623912584592421,0.356857977594324,0.788512075169673,0.117141414992713,0.300946099727719,0,0,0,0.368738337083406,0.521301686808497,0,0,0,0,0,0,0,0,0.744323423456331,0.767309866440312,0,0.256278298511402,0.511707249066704,0.160853921143607,0,0.154209693802656,0,0.164254312027618,0,0,0.120859449591622,0,0,0.34444334449382,0.546273504020151,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0.0915694648183434,0,0,0,0,0.096670718292122,0,0,0,0.214840489736547,0,0.170453254832202,0.267096106940212,0,0,0,0,0.464845549297286,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0.136499911407986,0,0,0.551365343546124,0,0,0,0,0.608731130888112,0,0,0.286822704408103,0.0982490410131212,0.35667105148125,0.354761064070598,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0.284136146806413,0,0,0,0.994147647766298,0.984685914873589,0.333926115068718,0.16480387422676,0,0.19924798825107,0,0,0,0,1.24415835064723,0,0,0,0,0,1.11136990144637,4.84666373047609,2.59750674853184,0,0,0,0,0,0,0,0,0.291604613383254,0.347249989866585,0,0.964771509003264,0,0.442317039724898,1.47773809476774,0.87754158861589,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0.234264445725339,0,0,0,0,0,0.30607276163049,0,0,0,0,0.330991955875499,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0.0882561266915003,0,0,0,2.78567502205866,0.195551382734803,0.160317640503067,0,0,0.144090417154106,0,1.71594997861965,0,0,0,0.135904206073614,0.104602846312333,0,0,0.600420288709789,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0.720599767084807,0,0,0,0,0,0,1.59045937961861,0.953423842781029,0.482259445395058,0.275078873194468,0.415440338029185,0,0,2.55148137963704,0,0,0,0.105600336519406,0,0.575745591958336,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,1.16354660725395,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.43034089983493,2.44052529803926,1.6274820991845,0.573409195690071,0.443716206147409,0.434674820589684,0.138348634936231,0,0,0,0,0,0,0,0,0,0.757612021100357,0,0,0.686520205190771,0.151230923763239,0,0,0.318593534327405,0.449803112163605,0.931577741257556,0,0,0,0.450772826991655,0.761610424337591,0,0.181848659202559,0.214821114084977,0,1.19428766609585,0.800055529326307,0.343395705182793,0,0,0,0,0,1.13352962756136,0.463044948647668,0,0.179088841081487,0.308801447160972,0,0.353378291891762,0.38582807654183,0,0,0,0,2.48865185073115,0,0,0,0,0.491545817507439,0,0,0,0,0,0.184105950251841,0,0.622077260032973,0,0.215649622793364,0,0.327628914576042,0,0.425149840203366,0,0,0,0,0,0,0,2.50493977876192,0,2.23487402680012,4.71767637753736,0.504143392443436,3.1120763608898,1.77623210195036,0,0,0,0,0,1.52552838186867,0,0,0,0.40341013740704,0,0,0,0,4.05225507710368,0.781078098613847,2.68692835451539,4.56593833396129,1.09394961803644,0,0,0,0,1.07140367175657,0,0,0,0,0,0,2.92269851800376,4.27523028158519,0,0.111231401892069,0,0.785577949580009,0,0.913158720509496,0,0,0,0.158013611732727,0,0,0,0,0,0,0,0.236664001461131,0.426067023795788,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0.233939463462106,0.397901550322736,0.237840181555137,0,0.549702583727146,0,0,0,0,0,0.235676547101626,0.392616934229891,0.297046400327086,1.2679671827502,1.18948980281472,0,0.0644578879735772,0,0,0,0,0,0,0,0,2.85564258801842,0.436350690340377,0,0.371995018166751,0,1.29787968637137,0,0.109265571963696,0.126698501011437,0.407955318967927,0,0.551369397209069,0,0.0757786982182394,0,0,0.103432995861895,0,0,0,0,0.224263725161227,0,0,0,0,0,0,0,0.162806537221949,0.106727345877715,0,0,0,0,0,0,0,0 | |phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34465029290355,0,0.730310090387373,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289693037921647,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0,1.32409180813219,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0.312160076830321,0,0,0.117434498643765,0.485618833104395,0.140450806702248,0,0.122834317311768,0,1.18800285728205,0.247266929278557,0,0,0,0,0,0.438977620880838,0.612975591598039,0,0,0.538168907066586,0.427114777637135,0.847727604638247,0.900273288253207,0.309157587715317,1.54584324027377,0.18611685633159,1.85653965465393,0,1.00973509697646,0.368199594569197,0.161646056818812,0.710019185033229,0.201504196455281,0.339121184620975,0,0,0,0.121973706129595,0.265059536642971,0,0.10366105501537,0,0,0,0.643240938192885,0,0,0,0,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0.301439377059586,1.74306691720059,0.499864955910285,0,0,0,0,0,0,0.289562613335158,0.410952645100767,0.179060963239896,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0.623912584592421,0.356857977594324,0.788512075169673,0.117141414992713,0.300946099727719,0,0,0,0.368738337083406,0.521301686808497,0,0,0,0,0,0,0,0,0.744323423456331,0.767309866440312,0,0.256278298511402,0.511707249066704,0.160853921143607,0,0.154209693802656,0,0.164254312027618,0,0,0.120859449591622,0,0,0.34444334449382,0.546273504020151,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0.0915694648183434,0,0,0,0,0.096670718292122,0,0,0,0.214840489736547,0,0.170453254832202,0.267096106940212,0,0,0,0,0.464845549297286,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0.136499911407986,0,0,0.551365343546124,0,0,0,0,0.608731130888112,0,0,0.286822704408103,0.0982490410131212,0.35667105148125,0.354761064070598,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0.284136146806413,0,0,0,0.994147647766298,0.984685914873589,0.333926115068718,0.16480387422676,0,0.19924798825107,0,0,0,0,1.24415835064723,0,0,0,0,0,1.11136990144637,4.84666373047609,2.59750674853184,0,0,0,0,0,0,0,0,0.291604613383254,0.347249989866585,0,0.964771509003264,0,0.442317039724898,1.47773809476774,0.87754158861589,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0.234264445725339,0,0,0,0,0,0.30607276163049,0,0,0,0,0.330991955875499,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0.0882561266915003,0,0,0,2.78567502205866,0.195551382734803,0.160317640503067,0,0,0.144090417154106,0,1.71594997861965,0,0,0,0.135904206073614,0.104602846312333,0,0,0.600420288709789,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0.720599767084807,0,0,0,0,0,0,1.59045937961861,0.953423842781029,0.482259445395058,0.275078873194468,0.415440338029185,0,0,2.55148137963704,0,0,0,0.105600336519406,0,0.575745591958336,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,1.16354660725395,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.43034089983493,2.44052529803926,1.6274820991845,0.573409195690071,0.443716206147409,0.434674820589684,0.138348634936231,0,0,0,0,0,0,0,0,0,0.757612021100357,0,0,0.686520205190771,0.151230923763239,0,0,0.318593534327405,0.449803112163605,0.931577741257556,0,0,0,0.450772826991655,0.761610424337591,0,0.181848659202559,0.214821114084977,0,1.19428766609585,0.800055529326307,0.343395705182793,0,0,0,0,0,1.13352962756136,0.463044948647668,0,0.179088841081487,0.308801447160972,0,0.353378291891762,0.38582807654183,0,0,0,0,2.48865185073115,0,0,0,0,0.491545817507439,0,0,0,0,0,0.184105950251841,0,0.622077260032973,0,0.215649622793364,0,0.327628914576042,0,0.425149840203366,0,0,0,0,0,0,0,2.50493977876192,0,2.23487402680012,4.71767637753736,0.504143392443436,3.1120763608898,1.77623210195036,0,0,0,0,0,1.52552838186867,0,0,0,0.40341013740704,0,0,0,0,4.05225507710368,0.781078098613847,2.68692835451539,4.56593833396129,1.09394961803644,0,0,0,0,1.07140367175657,0,0,0,0,0,0,2.92269851800376,4.27523028158519,0,0.111231401892069,0,0.785577949580009,0,0.913158720509496,0,0,0,0.158013611732727,0,0,0,0,0,0,0,0.236664001461131,0.426067023795788,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0.233939463462106,0.397901550322736,0.237840181555137,0,0.549702583727146,0,0,0,0,0,0.235676547101626,0.392616934229891,0.297046400327086,1.2679671827502,1.18948980281472,0,0.0644578879735772,0,0,0,0,0,0,0,0,2.85564258801842,0.436350690340377,0,0.371995018166751,0,1.29787968637137,0,0.109265571963696,0.126698501011437,0.407955318967927,0,0.551369397209069,0,0.0757786982182394,0,0,0.103432995861895,0,0,0,0,0.224263725161227,0,0,0,0,0,0,0,0.162806537221949,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p4@SCN8A | |short_description=p4@SCN8A | ||
}} | }} |
Latest revision as of 20:26, 18 September 2015
Short description: | p4@SCN8A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SCN8A_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | 52bp_to_ENST00000354534, NM_014191, uc001ryw.2_5end |
EntrezGene: | SCN8A |
HGNC: | 10596 |
UniProt: | Q9UQD0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data