FFCP PHASE1:Hg19::chr10:90984900..90984932,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3988 | |EntrezGene=3988 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=6617 | |HGNC=6617 | ||
|TSSclassifier=strong | |||
|UniProt=B4DE67 | |UniProt=B4DE67 | ||
|association_with_transcript=73bp_to_AK293491_5end | |association_with_transcript=73bp_to_AK293491_5end | ||
|cluster_id=chr10:90984900..90984932,- | |||
|coexpression_cluster_id=C54 | |coexpression_cluster_id=C54 | ||
|description=CAGE_peak_8_at_LIPA_5end | |description=CAGE_peak_8_at_LIPA_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000235;7.62e-42;6!CL:0002619;2.27e-21;3!CL:0000840;1.35e-11;5!CL:0002591;3.96e-08;1!CL:0000990;7.05e-08;8 | |ontology_enrichment_celltype_v019=CL:0000235;7.62e-42;6!CL:0002619;2.27e-21;3!CL:0000840;1.35e-11;5!CL:0002591;3.96e-08;1!CL:0000990;7.05e-08;8 | ||
|ontology_enrichment_celltype_v019_2=CL:0000235,2.66e-42,6;CL:0002619,1.17e-21,3;CL:0002194,6.97e-15,59;CL:0000576,6.97e-15,59;CL:0000040,6.97e-15,59;CL:0000559,6.97e-15,59;CL:0002009,2.49e-14,61;CL:0000839,4.29e-13,66;CL:0000557,7.21e-13,67;CL:0000766,7.81e-12,72;CL:0000840,1.36e-11,5;CL:0001029,1.36e-11,5;CL:0002591,6.68e-08,1;CL:0000990,7.06e-08,8;CL:0000763,3.39e-07,108;CL:0000049,3.39e-07,108 | |||
|ontology_enrichment_development_v019=UBERON:0005425;3.96e-08;1 | |ontology_enrichment_development_v019=UBERON:0005425;3.96e-08;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060084;2.97e-10;3!DOID:127;2.97e-10;3!DOID:0060072;6.70e-08;4 | |ontology_enrichment_disease_v019=DOID:0060084;2.97e-10;3!DOID:127;2.97e-10;3!DOID:0060072;6.70e-08;4 | ||
|ontology_enrichment_disease_v019_2=DOID:0060084,2.47e-10,3;DOID:127,2.47e-10,3;DOID:0060072,5.84e-08,4 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0002171;1.95e-08;1!UBERON:0006518;1.95e-08;1!UBERON:0008949;1.95e-08;1!UBERON:0000101;1.95e-08;1!UBERON:0002167;1.95e-08;1!UBERON:0000029;3.96e-08;1!UBERON:0000941;3.96e-08;1!UBERON:0001785;3.96e-08;1!UBERON:0002464;3.96e-08;1!UBERON:0004904;3.96e-08;1!UBERON:0001021;3.96e-08;1 | |ontology_enrichment_uberon_v019=UBERON:0002171;1.95e-08;1!UBERON:0006518;1.95e-08;1!UBERON:0008949;1.95e-08;1!UBERON:0000101;1.95e-08;1!UBERON:0002167;1.95e-08;1!UBERON:0000029;3.96e-08;1!UBERON:0000941;3.96e-08;1!UBERON:0001785;3.96e-08;1!UBERON:0002464;3.96e-08;1!UBERON:0004904;3.96e-08;1!UBERON:0001021;3.96e-08;1 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.20e-11,76;UBERON:0002405,2.72e-10,93;UBERON:0001474,3.86e-10,82;UBERON:0004765,4.71e-09,90;UBERON:0002193,1.54e-08,108;UBERON:0002171,1.88e-08,1;UBERON:0006518,1.88e-08,1;UBERON:0008949,1.88e-08,1;UBERON:0000101,1.88e-08,1;UBERON:0002167,1.88e-08,1;UBERON:0002390,3.82e-08,98;UBERON:0003061,3.82e-08,98;UBERON:0000029,3.83e-08,1;UBERON:0000941,4.11e-08,1;UBERON:0001785,4.11e-08,1;UBERON:0002464,4.11e-08,1;UBERON:0004904,4.11e-08,1;UBERON:0001021,4.11e-08,1;UBERON:0003902,4.11e-08,1;UBERON:0005425,4.11e-08,1;UBERON:0001434,6.13e-08,100 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.281908808191942,0,0.893922188854576,0,0,0.631719873426831,1.56711376919903,0,0,0.436882744260345,0.263766978228454,0,0,1.34465029290355,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0.464448369948228,0,0.30120591877825,0,0.154934401160603,0.142169232487422,0.293600439334847,0,0,0,1.79132379391939,4.53451132426571,1.54545340580512,0.290796477559129,0.755751887377619,0.242584061187816,0,0,0.309706370895104,0,0,0.236482229888585,0,0.645484683583826,0,0.564727018627814,0,0,0.306083892370903,0.641858054152187,0,0,0.398927315243264,0,0.290209238628584,0,0,0.251248665256743,0,0.217188844705117,0,0,0.316462387440884,0.633765858935825,0.212604299965044,0,0.22465726229299,0.300353785683013,0,0,0.39783335439818,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0.167186495390678,0,0,0,0.111410456885174,0,0,0,0,0.390178042679635,0.164437904603676,0,0.289803085735052,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.289693037921647,0,0,0.283604451492204,0,0.087834785693126,0.0654895377488563,0,0,14.6046327144608,14.8010276704377,16.752703025377,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0.760272105718513,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.132409180813219,1.14734648299525,0.709336764396714,0,0,0,0,0,0,0.302714855289863,0.576175924479999,0,0.312160076830321,0.570471821544449,0.448346041655403,0,0,0,0.204154171254893,0.368502951935304,0.103325781175765,1.18800285728205,0,0,0,0,0.125118519871964,0.277064115484183,0,0,0,0.113432183160021,0,0,0.635795703478686,0.600182192168805,0.309157587715317,0,0.37223371266318,0.168776332241266,0,0.252433774244115,0.0920498986422993,0.161646056818812,0,0,0,0,0.545492241181669,0.286804595389004,0,0,0.232387885739037,0,0,0,0,0,0,0,2.16563844500876,0.118306800039844,0,0.482022059766964,0.110293972732394,0,0,0.404493924480493,0,0,0.738155454624648,0,0,0,0,0,0.590789906681404,0,0,0.514703430895577,0.329250856225877,0,0.100528972411631,0,0,0,0,0.115930404975077,0.352226082707465,0.144366447761074,0,0.190254152234598,0,0.858486162094873,1.72351904261178,4.91408956792399,1.78357394746474,0,0,0,0,0,0,0,0.176096868026452,0,0,0,0.063497894292169,0.381988425558278,0,1.71072446022705,0.616964956219941,0.600686115687835,0,0,0,0.07333828582095,0,0,0,0.26593811658487,1.04007436911366,0,0,0,0.285955987316295,0,0.823240336780769,0.65147236858747,0,0,0,0,0.299918973546171,3.64871341923571,8.03611346291402,8.43335757932127,0,0,0,0.144781306667579,0.410952645100767,0.179060963239896,0.112085143993527,0,0.215627574859517,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,0,0.356857977594324,0.315404830067869,0,0,0,0,0,0.184369168541703,0.260650843404249,0,0,0.620304078368662,0,0,0,0,0.30239029332968,0.496215615637554,0,0,0.128139149255701,0,0.160853921143607,0,0,0.177561725313127,0,0,0.348631135379878,0.120859449591622,0.601519410909855,0.0920809889358963,0.229628896329213,0,0.262248829918848,0,0.231046011313244,0,0,0.105551628892876,0,0,0.215915916102139,0,0,0,0.254876273045038,0,0,0,0,0.512900250232778,0.328014645699706,0.325378394664303,0.103041011647722,0,0,0,0,0,0.096670718292122,0.462145851343933,0,0,0.107420244868274,0,0.340906509664404,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0.372158369359667,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0.243713489631284,0,0.272999822815972,0,1.13008116620243,0,0,0.438450885253763,0,0,0,0.30982349809975,0,0.143411352204052,0,0,0,0.211107635297664,0,0,0,0.0962221127255121,0,0,0.470719003883896,0,0,0,0,0.507447609232169,0,0,0,0,0,0.540031437238115,0,0,0,0.490080431962063,0,0,0,0,0.199579371432817,0,0.211673582723883,0,0,0,0,0,0.169291777801603,0,0,0,0.687010689511529,0,0,0,0,0,0,0,0,0,0.18714054040822,1.31857361344705,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0.276283915531148,0,0.102268682502155,0.246169610922139,0,0,0,0,0.295930216910801,0,0,0,0.0927680981618513,0,0,0,0,0.1137934482855,0.254253650292766,0,0.344743373241465,0.291604613383254,0.173624994933292,0,0,0,0.110579259931225,0.295547618953547,0,0,0,0.230850775511391,0.113942055847001,0,0,0,0,0.0915975934018623,1.5991043280559,0,0,0.166211681900156,0,0,0,0,0,0,0,0,0,0,0.707660516026713,1.22206028986725,0,0.123563938946503,0,0.269604531922708,0,0.234264445725339,0.182454789215666,0,0.971121518136371,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0,0,0,0.0730893170861856,0,0.193978032976839,0,0,0.137041924646751,0,0.126621591911757,0,0,0,0.19980960958213,0.144090417154106,0,0.171594997861965,0,0,0,0,0.104602846312333,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0.0787831823072236,0.0824158583811665,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0.335434687599266,0.157611414598396,0.104909176269996,0,0.179287339332845,0,0.714695326373367,0,0,1.62899880526114,3.45688596480507,0.653174720218818,0,0,0.170388021785422,0.113312091520126,0,0,0.129282956361551,0.13223260174269,0,0,0.427149650270779,0,2.48543433208317,1.48849806543585,0,0.60896299190448,0,0,0,0,0,0,0,0.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| ||
|short_description=p8@LIPA | |short_description=p8@LIPA | ||
}} | }} |
Latest revision as of 21:39, 19 September 2015
Short description: | p8@LIPA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_LIPA_5end |
Coexpression cluster: | C54_Dendritic_Macrophage_Monocytederived_CD14_leiomyoma_adipose_immature |
Association with transcript: | 73bp_to_AK293491_5end |
EntrezGene: | LIPA |
HGNC: | 6617 |
UniProt: | B4DE67 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 2.66e-42 | 6 |
adult endothelial progenitor cell | 1.17e-21 | 3 |
monopoietic cell | 6.97e-15 | 59 |
monocyte | 6.97e-15 | 59 |
monoblast | 6.97e-15 | 59 |
promonocyte | 6.97e-15 | 59 |
macrophage dendritic cell progenitor | 2.49e-14 | 61 |
myeloid lineage restricted progenitor cell | 4.29e-13 | 66 |
granulocyte monocyte progenitor cell | 7.21e-13 | 67 |
myeloid leukocyte | 7.81e-12 | 72 |
immature conventional dendritic cell | 1.36e-11 | 5 |
common dendritic progenitor | 1.36e-11 | 5 |
smooth muscle cell of the pulmonary artery | 6.68e-08 | 1 |
conventional dendritic cell | 7.06e-08 | 8 |
myeloid cell | 3.39e-07 | 108 |
common myeloid progenitor | 3.39e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.20e-11 | 76 |
immune system | 2.72e-10 | 93 |
bone element | 3.86e-10 | 82 |
skeletal element | 4.71e-09 | 90 |
hemolymphoid system | 1.54e-08 | 108 |
lower lobe of right lung | 1.88e-08 | 1 |
right lung lobe | 1.88e-08 | 1 |
lower lobe of lung | 1.88e-08 | 1 |
lobe of lung | 1.88e-08 | 1 |
right lung | 1.88e-08 | 1 |
hematopoietic system | 3.82e-08 | 98 |
blood island | 3.82e-08 | 98 |
lymph node | 3.83e-08 | 1 |
cranial nerve II | 4.11e-08 | 1 |
cranial nerve | 4.11e-08 | 1 |
nerve trunk | 4.11e-08 | 1 |
nerve connecting eye with brain | 4.11e-08 | 1 |
nerve | 4.11e-08 | 1 |
retinal neural layer | 4.11e-08 | 1 |
presumptive neural retina | 4.11e-08 | 1 |
skeletal system | 6.13e-08 | 100 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 2.47e-10 | 3 |
leiomyoma | 2.47e-10 | 3 |
benign neoplasm | 5.84e-08 | 4 |