FFCP PHASE1:Hg19::chrX:33147196..33147221,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1756 | |EntrezGene=1756 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2928 | |HGNC=2928 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-2bp_to_ENST00000472681_5end | |association_with_transcript=-2bp_to_ENST00000472681_5end | ||
|cluster_id=chrX:33147196..33147221,- | |||
|coexpression_cluster_id=C24 | |coexpression_cluster_id=C24 | ||
|description=CAGE_peak_19_at_DMD_5end | |description=CAGE_peak_19_at_DMD_5end | ||
|id=chrX:33147196..33147221,- | |id=chrX:33147196..33147221,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.83e-14;3 | |||
|ontology_enrichment_disease=DOID:178!1.34e-15!1;DOID:326!1.34e-15!1;DOID:3978!1.34e-15!1;DOID:3394!1.34e-15!1;DOID:5844!1.34e-15!1;DOID:114!1.86e-08!2 | |ontology_enrichment_disease=DOID:178!1.34e-15!1;DOID:326!1.34e-15!1;DOID:3978!1.34e-15!1;DOID:3394!1.34e-15!1;DOID:5844!1.34e-15!1;DOID:114!1.86e-08!2 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p19@DMD | |short_description=p19@DMD | ||
}} | }} |
Latest revision as of 21:55, 24 September 2015
Short description: | p19@DMD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_DMD_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | -2bp_to_ENST00000472681_5end |
EntrezGene: | DMD |
HGNC: | 2928 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pineal body | 1.56e-79 | 2 |
regional part of epithalamus | 1.56e-79 | 2 |
secretory circumventricular organ | 1.56e-79 | 2 |
circumventricular organ | 1.56e-79 | 2 |
epithalamus | 1.56e-79 | 2 |
gland of diencephalon | 1.81e-40 | 4 |
neuroendocrine gland | 1.81e-40 | 4 |
regional part of diencephalon | 1.81e-40 | 4 |
diencephalon | 1.14e-23 | 7 |
future diencephalon | 1.14e-23 | 7 |
medulla oblongata | 2.09e-14 | 3 |
myelencephalon | 2.09e-14 | 3 |
future myelencephalon | 2.09e-14 | 3 |
eye | 1.42e-08 | 21 |
visual system | 1.42e-08 | 21 |
neural plate | 2.69e-08 | 82 |
presumptive neural plate | 2.69e-08 | 82 |
neurectoderm | 6.09e-08 | 86 |
retina | 6.78e-08 | 6 |
photoreceptor array | 6.78e-08 | 6 |
posterior segment of eyeball | 6.78e-08 | 6 |
brainstem | 7.25e-08 | 6 |
sense organ | 1.27e-07 | 24 |
sensory system | 1.27e-07 | 24 |
entire sense organ system | 1.27e-07 | 24 |
regional part of nervous system | 2.12e-07 | 53 |
regional part of brain | 2.12e-07 | 53 |
neural tube | 4.78e-07 | 56 |
neural rod | 4.78e-07 | 56 |
future spinal cord | 4.78e-07 | 56 |
neural keel | 4.78e-07 | 56 |