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FFCP PHASE1:Mm9::chr1:34807429..34807497,+: Difference between revisions

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{{FFCP
{{FFCP
|DHSsupport=NA
|DPIdataset=NA
|EntrezGene=226970
|EntrezGene=226970
|HGNC=
|HGNC=
|MCL_coexpression_id=1
|TSSclassifier=NA
|UniProt=E0CY60
|UniProt=E0CY60
|association_with_transcript=-228bp_to_ENSMUST00000159021_5end
|association_with_transcript=-228bp_to_ENSMUST00000159021_5end
|cluster_id=chr1:34807429..34807497,+
|description=CAGE_peak_2_at_Arhgef4_5end
|description=CAGE_peak_2_at_Arhgef4_5end
|id=chr1:34807429..34807497,+
|id=chr1:34807429..34807497,+
|ontology_enrichment_celltype=CL:0000540!5.70e-09!33;CL:0000047!5.70e-09!33;CL:0000031!5.70e-09!33;CL:0000404!5.70e-09!33;CL:0000117!1.76e-08!23;CL:0000337!1.76e-08!23
|ontology_enrichment_celltype=CL:0000540!5.70e-09!33;CL:0000047!5.70e-09!33;CL:0000031!5.70e-09!33;CL:0000404!5.70e-09!33;CL:0000117!1.76e-08!23;CL:0000337!1.76e-08!23
|ontology_enrichment_celltype_v019_2=CL:0000117,6.06e-09,23;CL:0000337,6.06e-09,23;CL:0000540,9.95e-07,33;CL:0000047,9.95e-07,33;CL:0000031,9.95e-07,33;CL:0000404,9.95e-07,33
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0004121!1.34e-25!102;UBERON:0000924!1.34e-25!102;UBERON:0006601!1.34e-25!102;UBERON:0002346!7.61e-24!71;UBERON:0003075!7.61e-24!71;UBERON:0007284!7.61e-24!71;UBERON:0001017!4.49e-21!73;UBERON:0005743!4.49e-21!73;UBERON:0000073!5.25e-21!75;UBERON:0001016!5.25e-21!75;UBERON:0001049!7.36e-19!52;UBERON:0005068!7.36e-19!52;UBERON:0006241!7.36e-19!52;UBERON:0007135!7.36e-19!52;UBERON:0000033!1.15e-18!63;UBERON:0000955!6.45e-18!50;UBERON:0006238!6.45e-18!50;UBERON:0002616!2.47e-17!49;UBERON:0003056!1.54e-15!49;UBERON:0002020!7.83e-14!34;UBERON:0003080!7.88e-14!40;UBERON:0002780!4.25e-13!39;UBERON:0001890!4.25e-13!39;UBERON:0006240!4.25e-13!39;UBERON:0002791!5.47e-11!29;UBERON:0003528!5.47e-11!29;UBERON:0001893!5.47e-11!29;UBERON:0007811!1.19e-08!86;UBERON:0000153!1.82e-08!94;UBERON:0002021!4.95e-08!10;UBERON:0000411!4.95e-08!10;UBERON:0001950!4.95e-08!10;UBERON:0002619!1.58e-07!17;UBERON:0000956!7.12e-07!21;UBERON:0001869!7.12e-07!21;UBERON:0000203!7.12e-07!21
|ontology_enrichment_uberon=UBERON:0004121!1.34e-25!102;UBERON:0000924!1.34e-25!102;UBERON:0006601!1.34e-25!102;UBERON:0002346!7.61e-24!71;UBERON:0003075!7.61e-24!71;UBERON:0007284!7.61e-24!71;UBERON:0001017!4.49e-21!73;UBERON:0005743!4.49e-21!73;UBERON:0000073!5.25e-21!75;UBERON:0001016!5.25e-21!75;UBERON:0001049!7.36e-19!52;UBERON:0005068!7.36e-19!52;UBERON:0006241!7.36e-19!52;UBERON:0007135!7.36e-19!52;UBERON:0000033!1.15e-18!63;UBERON:0000955!6.45e-18!50;UBERON:0006238!6.45e-18!50;UBERON:0002616!2.47e-17!49;UBERON:0003056!1.54e-15!49;UBERON:0002020!7.83e-14!34;UBERON:0003080!7.88e-14!40;UBERON:0002780!4.25e-13!39;UBERON:0001890!4.25e-13!39;UBERON:0006240!4.25e-13!39;UBERON:0002791!5.47e-11!29;UBERON:0003528!5.47e-11!29;UBERON:0001893!5.47e-11!29;UBERON:0007811!1.19e-08!86;UBERON:0000153!1.82e-08!94;UBERON:0002021!4.95e-08!10;UBERON:0000411!4.95e-08!10;UBERON:0001950!4.95e-08!10;UBERON:0002619!1.58e-07!17;UBERON:0000956!7.12e-07!21;UBERON:0001869!7.12e-07!21;UBERON:0000203!7.12e-07!21
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.77e-26,54;UBERON:0010371,1.01e-25,73;UBERON:0004121,2.19e-24,95;UBERON:0000924,2.19e-24,95;UBERON:0006601,2.19e-24,95;UBERON:0001049,5.88e-24,52;UBERON:0005068,5.88e-24,52;UBERON:0006241,5.88e-24,52;UBERON:0007135,5.88e-24,52;UBERON:0002346,1.14e-23,64;UBERON:0003075,1.14e-23,64;UBERON:0007284,1.14e-23,64;UBERON:0001017,5.65e-23,73;UBERON:0001016,5.03e-22,75;UBERON:0002020,5.74e-20,34;UBERON:0000955,9.44e-19,47;UBERON:0006238,9.44e-19,47;UBERON:0002616,7.86e-18,46;UBERON:0010314,1.65e-16,92;UBERON:0003528,5.48e-15,29;UBERON:0002791,5.48e-15,29;UBERON:0001893,5.48e-15,29;UBERON:0003056,7.38e-15,49;UBERON:0003080,1.51e-14,40;UBERON:0002021,1.56e-13,10;UBERON:0000411,1.56e-13,10;UBERON:0001950,1.56e-13,10;UBERON:0002780,1.97e-13,39;UBERON:0001890,1.97e-13,39;UBERON:0006240,1.97e-13,39;UBERON:0003076,8.59e-11,12;UBERON:0003057,8.59e-11,12;UBERON:0002619,6.19e-10,17;UBERON:0000956,7.14e-09,21;UBERON:0001869,7.14e-09,21;UBERON:0000203,7.14e-09,21;UBERON:0002240,4.32e-08,6;UBERON:0005174,4.32e-08,6;UBERON:0001137,4.32e-08,6;UBERON:0002420,6.78e-08,8;UBERON:0007245,6.78e-08,8;UBERON:0010009,6.78e-08,8;UBERON:0010011,6.78e-08,8;UBERON:0000454,6.78e-08,8;UBERON:0002950,4.36e-07,4;UBERON:0001891,4.36e-07,4;UBERON:0009616,4.36e-07,4;UBERON:0010286,4.36e-07,4
|phase1_expression=0.160148847104794,0,0,0,0.500895729946347,0,0,0,0,0,0,0,0,0.0874204024189974,0,0,0.699561878128147,0,0,0,4.67738095830884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0.139986421625363,0,0,0,0,0,0,0.515672092277442,0.404632921719196,2.11596391708813,0.633831403506179,0,0,0,0,0,0,0,0.103689612308478,0.135005938331691,0,14.568200204594,9.27647871996777,0.244981598429908,0.0958454710182364,0.919218786610021,28.6301290598411,25.7928422932079,22.733766921924,0.527545150920775,1.37231465403614,1.56274011167028,32.3852278841602,19.6966913511088,21.0861581931998,10.3120004915784,8.39992916714707,3.72798891650601,0.075726193333184,0.377857800533928,0,0,0,0,0,0,0.983110940922263,0,0,0,1.83096445709685,0,0,0,0.216491041011214,0.253359865475099,0,0.5709193985953,0.258937883647172,0.742210695324124,0.867426633830679,0.304465478312141,0.461230994512117,1.05505848386836,1.64624189989987,1.0053327306374,0,0.144599356919912,0,0,0,0,0,23.1296829639122,22.8296910426666,0,0,0,0,29.8083372415597,19.2150253183823,2.26177833803156,14.2535942557667,18.9229438424445,19.3242881440391,16.2241263067758,0.203678727700633,0.124406970610093,0.252722758433675,1.47309299120532,0.650602214813519,0.229902104433473,0,0.452114453507145,1.15662048557257,0.896796041993948,1.03071897015702,5.43277078551933,0.215567992932842,0.378212160335639,0.175951124163949,0.43839146485515,0.278047249225598,0,0,0.995171334092466,0,0,0,0.414251545071004,0,0,0,0.393528463494808,0,0,0,0,0,0,0,0,0,0,18.0849355765149,1.54356918568927,0,0,1.06644125267617,1.16118335930219,0.128867461322093,0.201683524623343,0,0.190225626112559,0,0.494096864172033,0,0,0.19496408711912,0,0,0,0,0.342745537829186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0,0,0,0.189491411770485,0.162964976442026,0.678980343100753,0.234690248288502,0,0,0,0.157635144106191,0,0,0,0,0,0,0,0,0,21.1926778783885,22.2702204525186,0,0,0.315508219416257,0.780877488593277,1.07711698866399,0.716906393857656,0.222798674082394,0.283076530788832,0,1.16902343164525,0.395287777946524,6.74774764485795,0.425820255624806,1.06839362200353,0,0.329940245945071,0,0,0,0.188605079755898,0,0,0,0,0,0.316036757935816,1.05418608574999,0,0.680879211507576,0.540183282093931,0.905510786479282,0.214337035031592,0,0.713475270408282,1.15184314421485,0.913394847343798,0,0,0.220528398054962,1.81374878235628,0.645857706783622,1.20625849856312,1.3130957840345,1.96969079694074,0,29.11177241565,0,0.206386867963223,0,0,0,0,0,0,0,0.954670618015114,0.632671987162271,0,0.648032044930808,0.209088296014469,0.218362563746178,0.674321731924103,0.661227645802687,0.523511883968059,0,0,0,1.94371509857172,5.95650565645551,4.27792614356905,5.55387240954244,10.4752797804282,11.8530811032212,13.020438484395,9.12276296503684,0.483168241652012,0,0,0.202725215290164,0,0.129920822977795,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335769232728157,0.386379188064381,0,0.183151624267265,1.92931541171159,0,12.4245405375755,12.4287813856938,10.8850147553485,18.2164373284309,17.1270629942661,21.1510291269116,16.8755625057951,19.3638117386415,14.5005570874945,27.4412965228465,0.31136204275253,0.399024873401031,0.170733605754134,0.243106717068294,0.628839487883947,0.735374033800057,0.44449345560323,1.03017528619447,0.320919209591815,0.505394423527595,0.25347929989024,0.377252682772152,0.280924522409647,0.640251524048693,0.402048282689293,0.476293691283074,1.27472758539341,0.192909220463705,0.412085900803307,0.883193520806384,1.71434626192708,0.532427418478012,0.953744759789284,0.290692833264657,0.658765662907314,0.930760686808441,1.09756783723664,0.263069711437843,0.814824683075171,0,0.593175090620871,0.492522411877817,0,0,0.192906610981141,0.999242311751784,0,1.28922632428979,0.57386499620653,0.661774257358546,0
|phase1_expression=0.160148847104794,0,0,0,0.500895729946347,0,0,0,0,0,0,0,0,0.0874204024189974,0,0,0.699561878128147,0,0,0,4.67738095830884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0.139986421625363,0,0,0,0,0,0,0.515672092277442,0.404632921719196,2.11596391708813,0.633831403506179,0,0,0,0,0,0,0,0.103689612308478,0.135005938331691,0,14.568200204594,9.27647871996777,0.244981598429908,0.0958454710182364,0.919218786610021,28.6301290598411,25.7928422932079,22.733766921924,0.527545150920775,1.37231465403614,1.56274011167028,32.3852278841602,19.6966913511088,21.0861581931998,10.3120004915784,8.39992916714707,3.72798891650601,0.075726193333184,0.377857800533928,0,0,0,0,0,0,0.983110940922263,0,0,0,1.83096445709685,0,0,0,0.216491041011214,0.253359865475099,0,0.5709193985953,0.258937883647172,0.742210695324124,0.867426633830679,0.304465478312141,0.461230994512117,1.05505848386836,1.64624189989987,1.0053327306374,0,0.144599356919912,0,0,0,0,0,23.1296829639122,22.8296910426666,0,0,0,0,29.8083372415597,19.2150253183823,2.26177833803156,14.2535942557667,18.9229438424445,19.3242881440391,16.2241263067758,0.203678727700633,0.124406970610093,0.252722758433675,1.47309299120532,0.650602214813519,0.229902104433473,0,0.452114453507145,1.15662048557257,0.896796041993948,1.03071897015702,5.43277078551933,0.215567992932842,0.378212160335639,0.175951124163949,0.43839146485515,0.278047249225598,0,0,0.995171334092466,0,0,0,0.414251545071004,0,0,0,0.393528463494808,0,0,0,0,0,0,0,0,0,0,18.0849355765149,1.54356918568927,0,0,1.06644125267617,1.16118335930219,0.128867461322093,0.201683524623343,0,0.190225626112559,0,0.494096864172033,0,0,0.19496408711912,0,0,0,0,0.342745537829186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0,0,0,0.189491411770485,0.162964976442026,0.678980343100753,0.234690248288502,0,0,0,0.157635144106191,0,0,0,0,0,0,0,0,0,21.1926778783885,22.2702204525186,0,0,0.315508219416257,0.780877488593277,1.07711698866399,0.716906393857656,0.222798674082394,0.283076530788832,0,1.16902343164525,0.395287777946524,6.74774764485795,0.425820255624806,1.06839362200353,0,0.329940245945071,0,0,0,0.188605079755898,0,0,0,0,0,0.316036757935816,1.05418608574999,0,0.680879211507576,0.540183282093931,0.905510786479282,0.214337035031592,0,0.713475270408282,1.15184314421485,0.913394847343798,0,0,0.220528398054962,1.81374878235628,0.645857706783622,1.20625849856312,1.3130957840345,1.96969079694074,0,29.11177241565,0,0.206386867963223,0,0,0,0,0,0,0,0.954670618015114,0.632671987162271,0,0.648032044930808,0.209088296014469,0.218362563746178,0.674321731924103,0.661227645802687,0.523511883968059,0,0,0,1.94371509857172,5.95650565645551,4.27792614356905,5.55387240954244,10.4752797804282,11.8530811032212,13.020438484395,9.12276296503684,0.483168241652012,0,0,0.202725215290164,0,0.129920822977795,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335769232728157,0.386379188064381,0,0.183151624267265,1.92931541171159,0,12.4245405375755,12.4287813856938,10.8850147553485,18.2164373284309,17.1270629942661,21.1510291269116,16.8755625057951,19.3638117386415,14.5005570874945,27.4412965228465,0.31136204275253,0.399024873401031,0.170733605754134,0.243106717068294,0.628839487883947,0.735374033800057,0.44449345560323,1.03017528619447,0.320919209591815,0.505394423527595,0.25347929989024,0.377252682772152,0.280924522409647,0.640251524048693,0.402048282689293,0.476293691283074,1.27472758539341,0.192909220463705,0.412085900803307,0.883193520806384,1.71434626192708,0.532427418478012,0.953744759789284,0.290692833264657,0.658765662907314,0.930760686808441,1.09756783723664,0.263069711437843,0.814824683075171,0,0.593175090620871,0.492522411877817,0,0,0.192906610981141,0.999242311751784,0,1.28922632428979,0.57386499620653,0.661774257358546,0
|short_description=p2@Arhgef4
|short_description=p2@Arhgef4
}}
}}

Latest revision as of 02:05, 27 September 2015

Short description:p2@Arhgef4
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_2_at_Arhgef4_5end
Coexpression cluster:MCL_coexpression_mm9:1
Association with transcript: -228bp_to_ENSMUST00000159021_5end
EntrezGene:Arhgef4
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p2@Arhgef4

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G70.16
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I50.00
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I60.00
CD326+ enterocyte, pool1.CNhs13542.11848-124I30.00
CD326+ enterocyte, pool2.CNhs13197.11849-124I40.50
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I70.00
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I80.00
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E90.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E70.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F20.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E60.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F10.00
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E40.00
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E80.09
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A10.00
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A30.00
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.70
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.00
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.00
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.00
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A34.68
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.00
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.00
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D10.00
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D20.00
GP2+ M cell, pool1.CNhs13228.11845-124H90.00
GP2+ M cell, pool2.CNhs13231.11846-124I10.00
GP2+ M cell, pool3.CNhs13240.11847-124I20.00
Ileum epithelium, pool1.CNhs13199.10252-104B90.00
Ileum epithelium, pool2.CNhs13232.10253-104C10.00
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C80.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F50.00
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F60.00
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F70.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.00
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.00
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B30.00
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B70.00
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C20.00
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B80.22
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C30.00
Mouse Astrocytes, donor2.CNhs12078.11552-120C40.14
Mouse Astrocytes, donor3.CNhs12107.11633-122C40.00
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.00
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.00
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A10.00
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C10.00
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E10.00
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C50.52
Mouse Granule cells, donor1.CNhs12131.11713-123C30.40
Mouse Granule cells, donor2.CNhs12357.11731-123E32.12
Mouse Granule cells, donor3.CNhs12108.11636-122C70.63
Mouse Meningeal cells, donor1.CNhs12132.11716-123C60.00
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E70.00
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D20.00
Mouse Microglia, donor1.CNhs12629.11718-123C80.00
Mouse Microglia, donor2.CNhs12634.11736-123E80.00
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D50.10
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F50.14
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D90.00
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F114.57
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D59.28
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D20.24
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F20.10
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D60.92
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D328.63
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F325.79
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D722.73
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D40.53
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F41.37
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D81.56
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E432.39
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E519.70
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I621.09
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D610.31
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F68.40
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E13.73
Mouse Schwann, donor1.CNhs12507.11728-123D90.08
Mouse Schwann, donor2.CNhs12573.11746-123F90.38
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G30.00
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F70.00
Mouse hepatocyte, donor1.CNhs13078.11714-123C40.00
Mouse hepatocyte, donor3.CNhs12615.11637-122C80.00
Mouse hepatocyte, donor6.CNhs13090.11822-124F40.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F60.00
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A70.98
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E30.00
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.00
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G61.83
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H10.00
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I80.00
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G10.22
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G20.25
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G30.00
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B60.57
accessory axillary lymph node, adult.CNhs10475.1063-29H90.26
adrenal gland, adult.CNhs10508.49-24D70.74
adrenal gland, embryo E14.CNhs11038.406-44C50.87
adrenal gland, embryo E16.CNhs11004.1254-43D60.30
adrenal gland, embryo E17.CNhs11043.1263-45I10.46
adrenal gland, embryo E18.CNhs11026.1262-18F51.06
adrenal gland, neonate N00.CNhs11191.1311-23C11.65
adrenal gland, neonate N25.CNhs11223.1377-27I31.01
amnion, adult pregnant day17.5.CNhs10488.583-22A80.00
aorta, adult.CNhs10498.46-23H10.14
bone (os femoris), adult.CNhs10483.56-12G20.00
bone (os femoris), neonate N02.CNhs11227.1985-43F50.00
bone (os femoris), neonate N16.CNhs11225.1525-43A60.00
bone (os femoris), neonate N20.CNhs11195.1350-25C30.00
cecum, adult.CNhs10467.37-13H40.00
cerebellum, adult.CNhs10494.15-8B223.13
cerebellum, neonate N30.CNhs11135.1395-42I222.83
colon, adult.CNhs10468.36-18H70.00
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.00
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.00
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.00
corpora quadrigemina, adult.CNhs10501.16-22A429.81
corpus striatum, adult.CNhs10487.19-21D819.22
corpus striatum, neonate N00.CNhs11226.630-43F12.26
cortex, adult.CNhs10473.12-14D514.25
cortex, neonate N30.CNhs11107.1392-42F218.92
diencephalon, adult.CNhs10482.20-12F219.32
diencephalon, neonate N30.CNhs11201.1388-42B216.22
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B10.20
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A20.12
epididymis, adult.CNhs10490.58-23B20.25
eyeball, adult.CNhs10484.31-12G41.47
eyeball, embryo E12.CNhs11016.345-16C60.65
eyeball, embryo E14.CNhs10521.399-16E20.23
eyeball, embryo E15.CNhs10593.426-16C90.00
eyeball, embryo E17.CNhs11023.1261-18D40.45
eyeball, neonate N00.CNhs11207.633-15C61.16
eyeball, neonate N01.CNhs11140.1532-43E70.90
eyeball, neonate N02.CNhs11205.1551-44G81.03
eyeball, neonate N16.CNhs11188.777-19A25.43
forelimb, embryo E11.CNhs10596.335-25E20.22
forelimb, embryo E12.CNhs10600.359-14H20.38
forelimb, embryo E13.CNhs10589.384-1E20.18
forelimb, embryo E14.CNhs10577.413-26A80.44
forelimb, embryo E15.CNhs11007.437-20E70.28
forelimb, embryo E17.CNhs10598.1517-43C40.00
forelimb, embryo E18.CNhs11008.1520-43B50.00
gonad, embryo E13.CNhs11044.1564-45I61.00
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.00
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.00
heart, embryo E11.CNhs10586.331-24E90.41
heart, embryo E12.CNhs11015.353-12F50.00
heart, embryo E13.CNhs11013.376-3I90.00
heart, embryo E14.CNhs10597.403-26D40.00
heart, embryo E15.CNhs11017.431-16C80.39
heart, embryo E16.CNhs11021.457-17C60.00
heart, embryo E17.CNhs11025.479-18E50.00
heart, embryo E18.CNhs11030.1283-20G30.00
heart, neonate N00.CNhs11213.639-21E30.00
heart, neonate N03.CNhs11221.1349-25I20.00
heart, neonate N10.CNhs11118.749-24G10.00
heart, neonate N16.CNhs11209.782-15G10.00
heart, neonate N20.CNhs11127.821-26I60.00
heart, neonate N25.CNhs11196.1351-25D30.00
heart, neonate N30.CNhs11202.1390-42D20.00
hippocampus, adult.CNhs10478.13-16E818.08
hippocampus, neonate N00.CNhs11228.627-43G11.54
intestinal mucosa, adult.CNhs10506.860-29I30.00
intestine, adult.CNhs10496.178-9A30.00
intestine, embryo E12.CNhs11019.1251-16I51.07
intestine, embryo E13.CNhs11010.381-16D51.16
intestine, embryo E15.CNhs10602.976-16D80.13
intestine, embryo E16.CNhs10585.463-22H40.20
intestine, embryo E17.CNhs10582.482-18D30.00
intestine, embryo E18.CNhs10526.1289-20F70.19
intestine, neonate N00.CNhs11126.644-26D10.00
intestine, neonate N01.CNhs11192.1322-23E90.49
intestine, neonate N06.CNhs11102.688-20B80.00
intestine, neonate N07.CNhs11095.720-20F20.00
intestine, neonate N10.CNhs11098.755-23A50.19
intestine, neonate N20.CNhs11187.827-18D10.00
intestine, neonate N25.CNhs11121.1352-25E30.00
intestine, neonate N30.CNhs11131.1384-42G10.00
kidney, embryo E14.CNhs10606.411-4I90.00
kidney, embryo E15.CNhs10997.434-16F80.34
kidney, embryo E16.CNhs10584.464-22A50.00
kidney, embryo E17.CNhs11028.483-18I20.00
kidney, embryo E18.CNhs11001.1288-20C70.00
kidney, neonate N00.CNhs11214.646-21G70.00
kidney, neonate N10.CNhs11206.758-6D50.00
kidney, neonate N20.CNhs11113.832-19I10.00
kidney, neonate N25.CNhs11122.1353-25F30.00
kidney, neonate N30.CNhs11203.1385-42H10.00
liver, adult pregnant day01.CNhs10466.508-5B20.00
liver, embryo E12.CNhs10601.355-15F80.00
liver, embryo E13.CNhs10524.378-3H60.00
liver, embryo E14.CNhs10594.409-16E10.00
liver, embryo E15.CNhs10520.433-16D70.00
liver, embryo E16.CNhs10523.462-17F50.00
liver, embryo E17.CNhs10510.481-18A30.00
liver, embryo E18.CNhs10579.499-43G40.00
liver, neonate N00.CNhs11117.641-24F40.00
liver, neonate N03.CNhs11123.1345-25G20.00
liver, neonate N06.CNhs11101.684-20A80.00
liver, neonate N07.CNhs11103.716-20H20.37
liver, neonate N10.CNhs11115.751-24B90.00
liver, neonate N20.CNhs11220.823-25A30.00
liver, neonate N25.CNhs11198.1368-26H10.00
liver, neonate N30.CNhs11106.1382-42D10.00
lung, adult.CNhs10474.28-22B10.00
lung, embryo E12.CNhs10522.354-16G20.19
lung, embryo E14.CNhs10604.404-26F80.16
lung, embryo E15.CNhs11020.432-17C50.68
lung, embryo E16.CNhs10998.458-17B60.23
lung, embryo E17.CNhs10605.480-44A60.00
lung, embryo E18.CNhs10583.1287-20I60.00
lung, neonate N00.CNhs11224.640-42C60.00
lung, neonate N06.CNhs11212.683-20E50.16
lung, neonate N07.CNhs11111.715-19A30.00
lung, neonate N10.CNhs11219.750-23E60.00
lung, neonate N20.CNhs11109.822-18A40.00
lung, neonate N25.CNhs11119.1359-25C70.00
lung, neonate N30.CNhs11133.1394-42H20.00
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A10.00
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A10.00
mammary gland, adult lactating day02.CNhs10480.595-22B60.00
mammary gland, adult pregnant day19.CNhs10476.588-5H20.00
medulla oblongata, adult.CNhs10477.17-12C221.19
medulla oblongata, neonate N30.CNhs11200.1396-42A322.27
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.00
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C20.00
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E10.32
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E20.78
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E31.08
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D70.72
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D80.22
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D90.28
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D40.00
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D51.17
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D60.40
olfactory brain, adult.CNhs10489.18-22I96.75
ovary, adult.CNhs10507.91-2I70.43
ovary, embryo E18.CNhs11040.505-44H71.07
ovary, neonate N00.CNhs11217.1299-22I40.00
oviduct, adult pregnant day01.CNhs10500.988-6G60.33
pancreas, adult.CNhs10486.34-16E40.00
pancreas, embryo E14.CNhs11012.405-44F40.00
pancreas, embryo E15.CNhs11042.1556-45F20.00
pancreas, embryo E16.CNhs11003.460-26E50.19
pancreas, embryo E17.CNhs10599.1558-45G30.00
pancreas, embryo E18.CNhs10580.1535-43I70.00
pancreas, neonate N00.CNhs11105.645-26G90.00
pancreas, neonate N01.CNhs11138.1531-43D70.00
pancreas, neonate N02.CNhs11139.1539-43D80.00
pancreas, neonate N16.CNhs11136.787-43B60.32
pancreas, neonate N25.CNhs11094.1555-45E21.05
pancreas, neonate N30.CNhs11182.1548-44H50.00
pituitary gland, adult.CNhs10493.21-1G80.68
pituitary gland, embryo E12.CNhs11018.346-16E60.54
pituitary gland, embryo E13.CNhs11009.370-44C70.91
pituitary gland, embryo E14.CNhs11037.398-44A50.21
pituitary gland, embryo E15.CNhs10592.427-16B90.00
pituitary gland, embryo E16.CNhs11036.449-43F60.71
pituitary gland, embryo E17.CNhs11039.1265-44F51.15
pituitary gland, neonate N00.CNhs11190.1308-22E90.91
placenta, adult pregnant day10.CNhs10472.539-13I70.00
placenta, adult pregnant day17.CNhs10464.577-18G30.00
prostate, adult.CNhs10470.859-1F80.22
skin, adult.CNhs10492.30-1C31.81
skin, neonate N00.CNhs11124.650-25G40.65
skin, neonate N03.CNhs11215.662-22H31.21
skin, neonate N06.CNhs11097.693-20I51.31
skin, neonate N10.CNhs11108.762-6C41.97
small intestine, neonate N16.CNhs11114.790-21I10.00
spinal cord, adult.CNhs10505.24-13C929.11
spleen, adult.CNhs10465.25-2G20.00
spleen, embryo E16.CNhs11035.461-43C10.21
spleen, embryo E18.CNhs11011.1271-21F20.00
spleen, neonate N10.CNhs11116.752-24D10.00
spleen, neonate N20.CNhs11112.824-19H10.00
spleen, neonate N25.CNhs11099.1354-25G30.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C60.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D30.00
stomach, adult.CNhs10503.33-1H60.95
stomach, embryo E12.CNhs10588.356-43E30.63
stomach, embryo E15.CNhs10603.1252-16G80.00
stomach, embryo E16.CNhs11022.459-17D40.65
stomach, embryo E17.CNhs11006.1035-18D50.21
stomach, embryo E18.CNhs10999.1286-20C60.22
stomach, neonate N03.CNhs11193.1340-24B80.67
stomach, neonate N07.CNhs11210.718-18A90.66
stomach, neonate N25.CNhs11104.1355-25E40.52
stomach, neonate N30.CNhs11134.1386-42I10.00
submandibular gland, adult.CNhs10469.59-29C10.00
testis, adult.CNhs10504.57-7G50.00
testis, embryo E13.CNhs11031.389-23F51.94
testis, embryo E15.CNhs11034.443-27C55.96
testis, embryo E16.CNhs11033.470-26G54.28
testis, embryo E17.CNhs11029.486-18I55.55
testis, embryo E18.CNhs11027.503-18G510.48
testis, neonate N00.CNhs11189.1300-22B711.85
testis, neonate N07.CNhs11222.726-26I413.02
testis, neonate N10.CNhs11204.763-44D99.12
testis, neonate N20.CNhs11110.839-18H30.48
testis, neonate N30.CNhs11130.1391-42E20.00
thymus, adult.CNhs10471.38-12B50.00
thymus, embryo E14.CNhs11041.402-44I40.20
thymus, embryo E15.CNhs11005.430-45I20.00
thymus, embryo E16.CNhs11002.456-26C50.13
thymus, embryo E17.CNhs10581.478-18C10.00
thymus, embryo E18.CNhs10595.1273-19G40.00
thymus, neonate N02.CNhs11181.1541-43F80.00
thymus, neonate N03.CNhs11137.2104-43C70.00
thymus, neonate N06.CNhs11197.681-26C40.00
thymus, neonate N07.CNhs11211.713-19D30.00
thymus, neonate N10.CNhs11194.748-24E40.00
thymus, neonate N20.CNhs11186.820-7A20.00
thymus, neonate N25.CNhs11125.1362-25G70.00
thymus, neonate N30.CNhs11132.1393-42G20.00
tongue, adult.CNhs10499.32-1B40.00
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.00
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.00
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.34
urinary bladder, adult.CNhs10481.879-12E40.39
uterus, adult pregnant day19.CNhs10497.590-15F50.00
uterus, adult.CNhs10509.92-27E50.18
vagina, adult.CNhs10502.89-27D51.93
vesicular gland, adult.CNhs10491.51-27F80.00
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A112.42
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A212.43
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A310.89
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D718.22
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A417.13
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A521.15
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A616.88
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A719.36
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A814.50
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A927.44
whole body, embryo E11.CNhs11014.324-5I80.31
whole body, embryo E12.CNhs10587.857-27C90.40
whole body, embryo E13.CNhs10512.372-23H20.17
whole body, embryo E14.5.CNhs10578.420-27D20.24
whole body, embryo E14.CNhs10519.395-14B10.63
whole body, embryo E16.CNhs10514.453-14F20.74
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G50.44
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G51.03
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G50.32
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G50.51
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G50.25
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G50.38
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G50.28
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G50.64
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G50.40
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G50.48
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G51.27
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G50.19
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G50.41
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G50.88
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G51.71
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G50.53
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G50.95
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G50.29
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G50.66
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G50.93
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G51.10
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G50.26
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G50.81
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G50.59
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G50.49
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G50.00
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G50.00
whole body, embryo E17.5.CNhs10513.490-9F90.19
whole body, embryo E17.CNhs10517.475-3I51.00
whole body, embryo E18.CNhs10516.493-3B30.00
whole body, neonate N00.CNhs10525.657-19C21.29
whole body, neonate N01.CNhs10576.659-23C60.57
whole body, neonate N06.CNhs10515.692-21D10.66
whole body, neonate N10.CNhs10518.761-6B40.00





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Cell type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)6.06e-0923
neuroblast (sensu Vertebrata)6.06e-0923
neuron9.95e-0733
neuronal stem cell9.95e-0733
neuroblast9.95e-0733
electrically signaling cell9.95e-0733

Uber anatomy
Ontology termp-valuen
regional part of nervous system1.77e-2654
ecto-epithelium1.01e-2573
ectoderm-derived structure2.19e-2495
ectoderm2.19e-2495
presumptive ectoderm2.19e-2495
neural tube5.88e-2452
neural rod5.88e-2452
future spinal cord5.88e-2452
neural keel5.88e-2452
neurectoderm1.14e-2364
neural plate1.14e-2364
presumptive neural plate1.14e-2364
central nervous system5.65e-2373
nervous system5.03e-2275
gray matter5.74e-2034
brain9.44e-1947
future brain9.44e-1947
regional part of brain7.86e-1846
structure with developmental contribution from neural crest1.65e-1692
brain grey matter5.48e-1529
regional part of telencephalon5.48e-1529
telencephalon5.48e-1529
pre-chordal neural plate7.38e-1549
anterior neural tube1.51e-1440
occipital lobe1.56e-1310
visual cortex1.56e-1310
neocortex1.56e-1310
regional part of forebrain1.97e-1339
forebrain1.97e-1339
future forebrain1.97e-1339
posterior neural tube8.59e-1112
chordal neural plate8.59e-1112
regional part of cerebral cortex6.19e-1017
cerebral cortex7.14e-0921
cerebral hemisphere7.14e-0921
pallium7.14e-0921
spinal cord4.32e-086
dorsal region element4.32e-086
dorsum4.32e-086
basal ganglion6.78e-088
nuclear complex of neuraxis6.78e-088
aggregate regional part of brain6.78e-088
collection of basal ganglia6.78e-088
cerebral subcortex6.78e-088
regional part of midbrain4.36e-074
midbrain4.36e-074
presumptive midbrain4.36e-074
midbrain neural tube4.36e-074
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