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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005706
|DRA_sample_Accession=CAGE@SAMD00005706
|accession_numbers=CAGE;DRX008645;DRR009517;DRZ000942;DRZ002327!CAGE;DRX008646;DRR009518;DRZ000943;DRZ002328
|accession_numbers=CAGE;DRX008645;DRR009517;DRZ000942;DRZ002327;DRZ012292;DRZ013677!CAGE;DRX008646;DRR009518;DRZ000943;DRZ002328;DRZ012293;DRZ013678
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000955,UBERON:0001871,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000955,UBERON:0001871,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/duodenum%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12997.10071-101I8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/duodenum%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12997.10071-101I8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/duodenum%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12997.10071-101I8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/duodenum%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12997.10071-101I8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/duodenum%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12997.10071-101I8.hg38.nobarcode.ctss.bed.gz
|id=FF:10071-101I8
|id=FF:10071-101I8
|is_a=EFO:0002091;;FF:0010071
|is_a=EFO:0002091;;FF:0010071
|is_obsolete=
|is_obsolete=
|library_id=CNhs12997
|library_id=CNhs11781!CNhs12997
|library_id_phase_based=2:CNhs12997
|library_id_phase_based=2:CNhs12997
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10071
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10071
|name=duodenum, fetal, donor1
|name=duodenum, fetal, donor1
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
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|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 90: Line 100:
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|top_motifs=PRRX1,2:4.49698056112;MZF1:4.0753954197;NKX2-3_NKX2-5:4.03856917754;AHR_ARNT_ARNT2:3.94703764987;SOX2:3.83850113332;POU5F1:3.56555656474;MED-1{core}:3.51520294282;HOXA9_MEIS1:3.50920484209;ADNP_IRX_SIX_ZHX:3.495739526;ZFP161:3.46714277466;FOXM1:3.44878392734;POU6F1:3.23615562461;OCT4_SOX2{dimer}:3.17271227863;POU3F1..4:3.16990835274;BREu{core}:3.07383212194;CUX2:2.99800288706;RREB1:2.94603470837;POU1F1:2.91350768084;CDC5L:2.85716963762;NHLH1,2:2.83432072084;RFX1:2.75223238974;MTE{core}:2.74798850133;EGR1..3:2.74329311487;T:2.69265874784;MYFfamily:2.6814286004;SOX17:2.65875510142;TFDP1:2.63713435039;PRDM1:2.62219149785;FOXP1:2.60171408321;PATZ1:2.56876152942;DBP:2.5519186766;REST:2.50617302893;ZNF384:2.49785475036;NKX6-1,2:2.48707770141;ALX1:2.46466506414;GTF2I:2.35199564006;TFAP2B:2.31575501973;ZBTB6:2.22365785234;ATF2:2.20056881251;SOX{8,9,10}:2.1970911854;FOXD3:2.15504500096;SMAD1..7,9:2.15397893483;PAX4:2.12435365785;HMGA1,2:2.09133037302;LHX3,4:2.0405129636;PAX5:2.0400136608;LEF1_TCF7_TCF7L1,2:1.96650087448;ZIC1..3:1.94645947521;IKZF2:1.9367259423;NANOG:1.89083006398;TGIF1:1.88491113125;NRF1:1.83132008772;MAZ:1.77687466244;GCM1,2:1.7684905186;GFI1B:1.74985167195;GFI1:1.69635484792;BPTF:1.65458553902;GATA4:1.63793426326;ONECUT1,2:1.60569617203;HOX{A4,D4}:1.55278095991;HIC1:1.52417535833;KLF4:1.49415074168;MTF1:1.42747351513;YY1:1.41616582745;ARID5B:1.40368265736;HBP1_HMGB_SSRP1_UBTF:1.37884705152;PITX1..3:1.28950125022;LMO2:1.21734132153;TEF:1.20581539348;ZNF143:1.17560278949;SOX5:1.14494878846;RFX2..5_RFXANK_RFXAP:1.12549689179;FOXL1:1.11992558405;STAT1,3:1.11323149533;GZF1:1.0714253415;RORA:1.0252798824;TLX2:0.981584747467;RBPJ:0.978805612576;EP300:0.947142194435;AIRE:0.931318360521;PAX8:0.922785877629;JUN:0.918114697833;NKX3-1:0.898509268965;FOXP3:0.860202983786;PAX6:0.844062777364;FOXN1:0.827444556666;HMX1:0.775251885671;UFEwm:0.768575278397;ZNF423:0.750828628991;TOPORS:0.719048104438;ZBTB16:0.717733460435;PAX1,9:0.701434576043;MAFB:0.699428359687;FOXQ1:0.617466985691;XBP1:0.596536369631;EVI1:0.576865188261;SPZ1:0.53348735927;HAND1,2:0.529446532514;NFY{A,B,C}:0.392100479729;NKX3-2:0.388232110302;GTF2A1,2:0.376926443362;FOXA2:0.29382011251;CDX1,2,4:0.279776197999;CRX:0.272429578277;XCPE1{core}:0.268543333602;ATF5_CREB3:0.261250323668;GATA6:0.257884966321;CREB1:0.21006174643;MYOD1:0.185613131961;PBX1:0.181458828768;SP1:0.175719595113;PAX3,7:0.13493386734;ATF4:0.116251551166;FOX{F1,F2,J1}:0.0721754721389;ZNF238:0.062786326248;POU2F1..3:0.0519835758172;MEF2{A,B,C,D}:0.0365472556406;EBF1:0.00818727565503;PDX1:-0.162115172335;FOX{I1,J2}:-0.199366218356;ZEB1:-0.199937050157;DMAP1_NCOR{1,2}_SMARC:-0.202199718504;E2F1..5:-0.232702687868;ESRRA:-0.279926827798;NANOG{mouse}:-0.288547967757;NKX2-1,4:-0.297923359787;MYBL2:-0.300347453272;MYB:-0.321853750888;TBP:-0.32838607371;NR1H4:-0.363646459003;TFAP4:-0.37088709016;ELK1,4_GABP{A,B1}:-0.371423128082;FOX{D1,D2}:-0.403016683983;SPIB:-0.423519177673;TLX1..3_NFIC{dimer}:-0.452341300771;SNAI1..3:-0.490458879242;HOX{A5,B5}:-0.511147786311;TAL1_TCF{3,4,12}:-0.523596760267;HNF1A:-0.536404599053;PPARG:-0.559766193698;GLI1..3:-0.566871483843;VSX1,2:-0.577168851086;SPI1:-0.630001634893;NFE2L2:-0.635254721925;NR3C1:-0.683047090829;TFAP2{A,C}:-0.711442301363;IRF7:-0.777014244872;TEAD1:-0.789750155028;HNF4A_NR2F1,2:-0.790401393818;SREBF1,2:-0.801257342334;STAT2,4,6:-0.801776248485;PAX2:-0.816161079572;NFIL3:-0.821304872617;RUNX1..3:-0.835524316263;HOX{A6,A7,B6,B7}:-0.868102401545;AR:-0.89050078181;FOXO1,3,4:-0.91856007876;ESR1:-0.933806016983;bHLH_family:-0.936865462206;ALX4:-0.967140929117;HSF1,2:-0.972073710859;ZNF148:-1.0031334454;CEBPA,B_DDIT3:-1.01155174311;NFATC1..3:-1.02368666893;TBX4,5:-1.06123311515;NFKB1_REL_RELA:-1.06148729392;NFE2L1:-1.07142241126;FOS_FOS{B,L1}_JUN{B,D}:-1.07235635573;ETS1,2:-1.0757593878;HES1:-1.08134091221;NR6A1:-1.09634605466;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.10717888219;NFIX:-1.1126936269;FOSL2:-1.11377349175;EN1,2:-1.11842315642;IKZF1:-1.12759196232;HIF1A:-1.13706422178;NFE2:-1.1551838157;BACH2:-1.17199771353;IRF1,2:-1.21256465969;NR5A1,2:-1.2169410422;TP53:-1.24656731364;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.25316046103;ATF6:-1.27309316785;STAT5{A,B}:-1.29730328898;RXRA_VDR{dimer}:-1.34256545457;TFCP2:-1.39666726184;HLF:-1.5831583708;NKX2-2,8:-1.58967002556;SRF:-1.71355159804;ELF1,2,4:-1.87614223301;RXR{A,B,G}:-1.95964475021HNF4A_NR2F1,2:4.43530262188;HNF1A:4.29065582854;GATA6:3.51007180507;FOXP1:3.45742742109;SPZ1:2.56749476623;TBP:2.48482384784;MYBL2:2.45464158728;TOPORS:2.42743924136;NR5A1,2:2.33200829851;RBPJ:2.32243962356;DBP:2.29053973166;NR6A1:2.25726977499;ONECUT1,2:2.21297703275;ZNF384:2.06294342277;ZEB1:1.81965307413;MTF1:1.7942365857;RXRA_VDR{dimer}:1.71006624132;SNAI1..3:1.67331983951;TLX2:1.65568152727;PITX1..3:1.60926751271;LMO2:1.58389051873;ALX1:1.5221569988;PRDM1:1.47630293354;POU6F1:1.35892822414;HIC1:1.34641742167;MTE{core}:1.34169843437;RREB1:1.33243292954;SRF:1.3144952797;SP1:1.30286240685;IKZF2:1.28972269837;XCPE1{core}:1.27643513974;HOX{A6,A7,B6,B7}:1.2740838598;FOXD3:1.24593570159;PBX1:1.21390571389;MYOD1:1.19182431133;TAL1_TCF{3,4,12}:1.18199644646;NKX2-3_NKX2-5:1.17515290787;ZBTB16:1.17400562844;TFCP2:1.1508210246;ATF6:1.14957021685;GCM1,2:1.14253282947;MAZ:1.14192972196;FOX{F1,F2,J1}:1.13997502651;EN1,2:1.11135504641;HAND1,2:1.08255278478;FOXL1:1.07809350752;NR1H4:1.05707491614;ADNP_IRX_SIX_ZHX:1.01436227482;T:1.00862077379;HMGA1,2:0.992923032721;CDX1,2,4:0.949376471697;FOX{D1,D2}:0.947595242382;NKX6-1,2:0.918963998547;TLX1..3_NFIC{dimer}:0.918799939356;MYFfamily:0.915362857666;FOXA2:0.907473191261;MED-1{core}:0.900077176403;ZNF148:0.875114593387;PAX3,7:0.858059844619;PATZ1:0.848927538995;EP300:0.848710686136;MZF1:0.830318266557;GTF2I:0.795425345494;NKX3-1:0.795251006475;ZNF423:0.771687233679;NKX3-2:0.765352164474;POU1F1:0.729306157625;TFAP2B:0.724721696358;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.679795054346;NKX2-1,4:0.677443634298;LHX3,4:0.668847319737;BREu{core}:0.665718470039;FOXM1:0.641292363773;TFAP2{A,C}:0.625422097148;EGR1..3:0.553732132765;AIRE:0.539132369995;ESR1:0.523743084743;GLI1..3:0.485610599355;KLF4:0.476229126991;GFI1B:0.451857789965;PAX5:0.424996567408;REST:0.422896918134;SOX5:0.419095502752;FOXO1,3,4:0.410970458409;ZFP161:0.388384441071;POU5F1:0.369057183692;GATA4:0.361317417424;STAT2,4,6:0.332188643019;STAT1,3:0.322241937473;TBX4,5:0.258064375322;PAX6:0.255064837958;IRF1,2:0.238673829314;TFAP4:0.1943133433;POU3F1..4:0.185448700408;LEF1_TCF7_TCF7L1,2:0.177598004834;NR3C1:0.157283100031;GTF2A1,2:0.139510631737;PRRX1,2:0.134613868027;ATF2:0.133273244522;ETS1,2:0.12757054077;VSX1,2:0.127333664879;TEAD1:0.112370121533;IRF7:0.109214882979;SOX2:-0.00586855813255;ATF4:-0.0136717445949;FOXN1:-0.0149773405426;NHLH1,2:-0.0195382754854;TGIF1:-0.0214803412524;IKZF1:-0.0329942494771;GFI1:-0.035274430618;BPTF:-0.0513638264652;SPI1:-0.0747486155595;RUNX1..3:-0.0905535841421;HBP1_HMGB_SSRP1_UBTF:-0.0908742957304;CUX2:-0.0982051757796;ZNF238:-0.115256357519;GZF1:-0.125638615065;CDC5L:-0.137595932471;PDX1:-0.139268533269;ATF5_CREB3:-0.146985753682;SPIB:-0.161534125315;FOXP3:-0.201282299138;OCT4_SOX2{dimer}:-0.201538527014;SOX17:-0.209637488924;JUN:-0.210218262878;ARID5B:-0.248508448169;XBP1:-0.265561743373;UFEwm:-0.268586103626;E2F1..5:-0.283068125536;FOX{I1,J2}:-0.284724818192;SMAD1..7,9:-0.306376748367;ZBTB6:-0.328364381454;HOX{A5,B5}:-0.3521200859;NANOG{mouse}:-0.3699606713;NANOG:-0.375522610026;HMX1:-0.379433597084;CRX:-0.386546295821;NFATC1..3:-0.407858731776;DMAP1_NCOR{1,2}_SMARC:-0.441246068883;NFKB1_REL_RELA:-0.445453272187;HOXA9_MEIS1:-0.445815142551;EBF1:-0.450462568378;SOX{8,9,10}:-0.463879699403;MAFB:-0.4667276978;ZIC1..3:-0.474438698586;MEF2{A,B,C,D}:-0.482979181769;RORA:-0.48431024495;RXR{A,B,G}:-0.484815328057;EVI1:-0.506720926944;AR:-0.509248931808;RFX1:-0.511413490162;AHR_ARNT_ARNT2:-0.516611846402;HES1:-0.571959655239;NFY{A,B,C}:-0.572891323657;POU2F1..3:-0.583342449581;ELF1,2,4:-0.608554464197;ESRRA:-0.61523225135;FOSL2:-0.62141440026;TEF:-0.656828057711;TP53:-0.667608944628;SREBF1,2:-0.67549523076;ZNF143:-0.678059492723;YY1:-0.715947169801;PAX2:-0.719449967033;bHLH_family:-0.737232989911;PAX1,9:-0.767712795271;CREB1:-0.788865672752;TFDP1:-0.801345750262;HLF:-0.824378150482;NKX2-2,8:-0.85186615726;STAT5{A,B}:-0.881065240919;NFIL3:-0.891405964573;RFX2..5_RFXANK_RFXAP:-0.95524640545;NRF1:-1.0145827202;NFE2:-1.06146128467;PPARG:-1.07143381806;FOS_FOS{B,L1}_JUN{B,D}:-1.07306279631;CEBPA,B_DDIT3:-1.08560488934;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.0919219916;BACH2:-1.15044331665;HSF1,2:-1.17779131429;NFE2L2:-1.20365100839;HIF1A:-1.27412258281;FOXQ1:-1.30460272112;HOX{A4,D4}:-1.32592468844;PAX4:-1.47332776007;ALX4:-1.52764460647;MYB:-1.54882808106;NFIX:-1.61116854899;PAX8:-1.67150995202;ELK1,4_GABP{A,B1}:-1.76891036279;NFE2L1:-2.53563260981
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10071-101I8;search_select_hide=table117:FF:10071-101I8
}}
}}

Latest revision as of 12:19, 3 June 2020

Name:duodenum, fetal, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11781,CNhs12997
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueduodenum
dev stage36 weeks fetus
sexmale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberA706076
catalog numberCat:RtHFN: Small Intestine: Duodenum
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005706
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11781 CAGE DRX008645 DRR009517
CNhs12997 CAGE DRX008646 DRR009518
Accession ID Hg19

Library idBAMCTSS
CNhs11781 DRZ000942 DRZ002327
CNhs12997 DRZ000943 DRZ002328
Accession ID Hg38

Library idBAMCTSS
CNhs11781 DRZ012292 DRZ013677
CNhs12997 DRZ012293 DRZ013678
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
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Hg38
BAMCTSS
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Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.209
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.108
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0.534
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.344
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.848
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.124
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.336
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.344
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0.344
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0856
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.169
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0.344
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0.534
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.111
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.534
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0.666
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0442
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.344
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0.344
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.208
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0.534
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.059
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.165
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.344
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.666
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.295
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.344
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.344
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.32
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.534
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



No results for this sample



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11781

Jaspar motifP-value
MA0002.20.191
MA0003.10.338
MA0004.10.0588
MA0006.10.154
MA0007.11
MA0009.10.51
MA0014.10.576
MA0017.12.35264e-6
MA0018.20.233
MA0019.10.596
MA0024.10.143
MA0025.10.357
MA0027.10.605
MA0028.11.04388e-8
MA0029.10.926
MA0030.10.641
MA0031.10.984
MA0035.20.0672
MA0038.10.27
MA0039.20.708
MA0040.10.848
MA0041.10.504
MA0042.10.61
MA0043.10.0174
MA0046.19.67734e-36
MA0047.20.143
MA0048.10.117
MA0050.10.93
MA0051.10.525
MA0052.10.354
MA0055.10.0164
MA0057.10.693
MA0058.10.00408
MA0059.10.00774
MA0060.10.0068
MA0061.19.22595e-6
MA0062.21.62736e-11
MA0065.20.504
MA0066.10.847
MA0067.10.0601
MA0068.10.966
MA0069.10.876
MA0070.10.379
MA0071.10.339
MA0072.10.118
MA0073.10.312
MA0074.10.744
MA0076.11.21887e-9
MA0077.10.648
MA0078.10.808
MA0079.20.916
MA0080.20.0187
MA0081.10.00432
MA0083.10.0786
MA0084.10.55
MA0087.10.135
MA0088.10.196
MA0090.10.619
MA0091.10.812
MA0092.10.964
MA0093.10.0495
MA0099.25.25888e-21
MA0100.10.0663
MA0101.11.63389e-5
MA0102.20.0996
MA0103.16.51481e-4
MA0104.23.79441e-4
MA0105.11.22804e-7
MA0106.10.023
MA0107.16.15476e-5
MA0108.24.94024e-7
MA0111.10.247
MA0112.20.529
MA0113.10.775
MA0114.13.01239e-5
MA0115.10.329
MA0116.10.0207
MA0117.10.118
MA0119.10.672
MA0122.10.974
MA0124.10.427
MA0125.10.485
MA0131.10.87
MA0135.10.463
MA0136.15.60165e-6
MA0137.20.787
MA0138.20.0195
MA0139.10.154
MA0140.10.781
MA0141.10.35
MA0142.10.0795
MA0143.10.203
MA0144.10.461
MA0145.10.625
MA0146.10.725
MA0147.10.0012
MA0148.10.257
MA0149.10.0392
MA0150.16.44763e-8
MA0152.10.0583
MA0153.18.23369e-20
MA0154.10.17
MA0155.10.65
MA0156.15.00674e-6
MA0157.10.158
MA0159.10.535
MA0160.10.406
MA0162.10.898
MA0163.10.024
MA0164.10.326
MA0258.10.185
MA0259.10.048


library id: CNhs12997This sample isn't target for the analysis



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11781

Novel motifP-value
10.38
100.229
1000.684
1010.185
1020.577
1030.124
1040.879
1050.884
1060.104
1070.033
1080.587
1090.0941
110.935
1100.538
1110.797
1120.352
1133.09125e-5
1140.256
1150.442
1160.22
1170.00534
1180.692
1190.0755
120.42
1200.554
1210.222
1220.1
1232.29302e-4
1240.95
1250.552
1260.322
1270.0975
1280.0136
1290.969
130.165
1300.522
1310.409
1320.00249
1330.0922
1340.768
1350.196
1360.244
1370.144
1380.94
1390.638
140.886
1400.266
1410.963
1420.772
1430.0158
1440.818
1450.0854
1460.418
1470.659
1480.759
1490.376
150.204
1500.654
1510.468
1520.585
1530.534
1540.267
1550.668
1560.452
1570.526
1580.881
1590.773
160.815
1600.74
1610.855
1620.25
1630.105
1640.73
1650.844
1660.288
1670.813
1680.649
1690.36
170.6
180.011
190.11
20.00642
200.0689
210.536
220.498
230.266
240.458
250.564
260.659
270.429
280.993
290.0273
30.936
300.0921
310.492
321.1628e-5
330.262
340.435
350.378
360.0934
370.0989
380.525
390.497
40.638
400.556
410.0203
420.664
430.92
440.908
450.652
460.618
470.497
480.851
490.596
50.451
500.563
510.672
520.077
530.0335
540.588
550.306
560.924
570.846
580.654
590.714
60.962
600.228
610.509
620.922
630.842
640.823
650.466
660.0198
670.264
680.381
690.953
70.921
700.684
710.415
720.375
730.0784
740.0674
750.00105
760.201
770.108
780.245
790.666
80.819
800.587
810.9
820.537
830.914
840.421
850.103
860.0394
870.00642
880.786
890.458
90.9
900.166
910.156
920.0701
930.394
940.0886
950.0368
960.721
970.953
980.428
990.0762


library id: CNhs12997

Novel motifP-value
10.0486
100.081
1000.436
1010.944
1020.911
1030.141
1040.115
1050.0772
1060.0276
1070.0926
1080.953
1095.8364e-4
110.0217
1100.13
1110.233
1120.28
1130.463
1140.0483
1150.55
1160.376
1170.0182
1180.238
1190.185
120.572
1200.248
1210.468
1220.794
1230.418
1240.229
1250.359
1260.0141
1270.209
1280.162
1290.433
130.00364
1300.0736
1310.762
1320.744
1330.268
1340.698
1350.83
1360.00654
1370.504
1380.791
1390.089
140.583
1400.431
1410.431
1420.972
1430.0166
1440.902
1450.219
1460.464
1470.962
1480.0348
1490.141
150.0928
1500.234
1510.445
1520.0362
1530.991
1540.542
1550.684
1560.336
1570.402
1580.787
1590.115
160.0475
1600.274
1610.24
1620.53
1630.495
1640.061
1650.23
1660.736
1670.599
1680.0753
1690.00899
170.0717
180.262
190.134
20.605
200.34
210.151
220.103
230.182
240.0457
250.477
260.0105
270.555
280.611
290.0523
30.0406
300.801
310.65
320.0584
330.147
340.533
350.648
360.128
370.0148
380.24
390.236
40.995
400.0298
410.219
420.178
430.109
440.198
450.6
460.222
470.0598
480.0615
490.144
50.266
500.333
510.415
520.35
530.821
540.326
550.729
560.436
570.463
580.211
590.0464
60.997
600.0421
610.04
620.159
630.14
640.416
650.212
660.353
670.468
680.257
690.536
70.0563
700.0292
710.02
720.177
730.0107
740.733
750.0401
760.468
770.102
780.00489
790.489
80.108
800.148
810.644
820.429
830.00226
840.941
850.0676
860.244
870.00102
880.749
890.255
90.315
900.199
910.912
920.282
930.824
940.128
950.00489
960.308
970.775
980.234
990.696



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11781
library id: CNhs12997


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000955 (brain)
0001871 (temporal lobe)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010071 (human temporal lobe - fetal sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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