FF:10193-103E4: Difference between revisions

Latest revision as of 12:26, 3 June 2020

Name:	diencephalon, adult
Species:	Human (Homo sapiens)
Library ID:	CNhs12610
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	diencephalon
dev stage	NA
sex	male
age	26
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	NA
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	R1234049-10
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004780

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12610		CAGE		DRX008643		DRR009515

Accession ID Hg19

Library id		BAM		CTSS
CNhs12610		DRZ000940		DRZ002325

Accession ID Hg38

Library id		BAM		CTSS
CNhs12610		DRZ012290		DRZ013675

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.167
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.256
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.356
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.337
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.287
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.0914
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.167
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.167
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0.0914
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.422
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0906
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.348
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0914
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0426
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.0914
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0153
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.84
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0587
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.287
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0914
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.0914
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.422
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.581
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0392
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0663
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.422
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.558
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.459
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	1.08
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0914
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.167
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.167
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.459
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.0914
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.493
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.631
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.00246
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.0914
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12610

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00533
MA0003.1	MA0003.1	0.367
MA0004.1	MA0004.1	0.395
MA0006.1	MA0006.1	0.46
MA0007.1	MA0007.1	0.354
MA0009.1	MA0009.1	0.105
MA0014.1	MA0014.1	0.693
MA0017.1	MA0017.1	0.0118
MA0018.2	MA0018.2	0.142
MA0019.1	MA0019.1	0.46
MA0024.1	MA0024.1	0.882
MA0025.1	MA0025.1	0.319
MA0027.1	MA0027.1	0.477
MA0028.1	MA0028.1	0.0721
MA0029.1	MA0029.1	0.0381
MA0030.1	MA0030.1	0.212
MA0031.1	MA0031.1	0.966
MA0035.2	MA0035.2	0.0231
MA0038.1	MA0038.1	0.0605
MA0039.2	MA0039.2	0.135
MA0040.1	MA0040.1	0.438
MA0041.1	MA0041.1	0.326
MA0042.1	MA0042.1	0.695
MA0043.1	MA0043.1	0.799
MA0046.1	MA0046.1	0.0543
MA0047.2	MA0047.2	0.2
MA0048.1	MA0048.1	0.0591
MA0050.1	MA0050.1	0.00382
MA0051.1	MA0051.1	0.128
MA0052.1	MA0052.1	0.661
MA0055.1	MA0055.1	2.23573e-4
MA0057.1	MA0057.1	0.948
MA0058.1	MA0058.1	0.436
MA0059.1	MA0059.1	0.107
MA0060.1	MA0060.1	0.333
MA0061.1	MA0061.1	0.00366
MA0062.2	MA0062.2	0.00451
MA0065.2	MA0065.2	0.00384
MA0066.1	MA0066.1	0.051
MA0067.1	MA0067.1	0.847
MA0068.1	MA0068.1	0.0569
MA0069.1	MA0069.1	0.57
MA0070.1	MA0070.1	0.0928
MA0071.1	MA0071.1	0.0246
MA0072.1	MA0072.1	0.508
MA0073.1	MA0073.1	0.558
MA0074.1	MA0074.1	0.318
MA0076.1	MA0076.1	0.149
MA0077.1	MA0077.1	0.062
MA0078.1	MA0078.1	0.724
MA0079.2	MA0079.2	0.414
MA0080.2	MA0080.2	9.46668e-9
MA0081.1	MA0081.1	0.0393
MA0083.1	MA0083.1	0.0374
MA0084.1	MA0084.1	0.653
MA0087.1	MA0087.1	0.241
MA0088.1	MA0088.1	0.121
MA0090.1	MA0090.1	0.156
MA0091.1	MA0091.1	0.826
MA0092.1	MA0092.1	0.313
MA0093.1	MA0093.1	0.457
MA0099.2	MA0099.2	1.31105e-17
MA0100.1	MA0100.1	0.567
MA0101.1	MA0101.1	0.00167
MA0102.2	MA0102.2	0.0568
MA0103.1	MA0103.1	0.207
MA0104.2	MA0104.2	0.478
MA0105.1	MA0105.1	3.0824e-4
MA0106.1	MA0106.1	0.0187
MA0107.1	MA0107.1	0.00195
MA0108.2	MA0108.2	0.88
MA0111.1	MA0111.1	0.488
MA0112.2	MA0112.2	0.00161
MA0113.1	MA0113.1	0.187
MA0114.1	MA0114.1	0.00856
MA0115.1	MA0115.1	0.867
MA0116.1	MA0116.1	0.0036
MA0117.1	MA0117.1	0.818
MA0119.1	MA0119.1	0.0446
MA0122.1	MA0122.1	0.747
MA0124.1	MA0124.1	0.879
MA0125.1	MA0125.1	0.272
MA0131.1	MA0131.1	0.619
MA0135.1	MA0135.1	0.0105
MA0136.1	MA0136.1	1.35668e-12
MA0137.2	MA0137.2	0.777
MA0138.2	MA0138.2	0.0966
MA0139.1	MA0139.1	0.467
MA0140.1	MA0140.1	0.013
MA0141.1	MA0141.1	0.0346
MA0142.1	MA0142.1	0.545
MA0143.1	MA0143.1	0.0739
MA0144.1	MA0144.1	0.543
MA0145.1	MA0145.1	0.31
MA0146.1	MA0146.1	0.00946
MA0147.1	MA0147.1	0.325
MA0148.1	MA0148.1	0.221
MA0149.1	MA0149.1	0.00669
MA0150.1	MA0150.1	3.44588e-5
MA0152.1	MA0152.1	0.82
MA0153.1	MA0153.1	0.819
MA0154.1	MA0154.1	0.0503
MA0155.1	MA0155.1	0.97
MA0156.1	MA0156.1	5.57529e-7
MA0157.1	MA0157.1	0.457
MA0159.1	MA0159.1	0.0224
MA0160.1	MA0160.1	0.069
MA0162.1	MA0162.1	0.172
MA0163.1	MA0163.1	1.2202e-6
MA0164.1	MA0164.1	0.529
MA0258.1	MA0258.1	0.0195
MA0259.1	MA0259.1	0.753

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12610

Novel motif	Logo	P-value
1	1	0.0541
10	10	0.0246
100	100	0.252
101	101	0.857
102	102	0.814
103	103	0.309
104	104	0.0693
105	105	0.0848
106	106	0.0468
107	107	0.14
108	108	0.789
109	109	0.00992
11	11	0.00989
110	110	0.0417
111	111	0.145
112	112	0.566
113	113	0.739
114	114	0.158
115	115	0.67
116	116	0.229
117	117	0.00596
118	118	0.198
119	119	0.162
12	12	0.627
120	120	0.173
121	121	0.461
122	122	0.426
123	123	0.198
124	124	0.0716
125	125	0.737
126	126	0.0761
127	127	0.453
128	128	0.303
129	129	0.875
13	13	7.39237e-4
130	130	0.606
131	131	0.0294
132	132	0.806
133	133	0.0033
134	134	0.527
135	135	0.175
136	136	0.0121
137	137	0.75
138	138	0.911
139	139	0.165
14	14	0.794
140	140	0.256
141	141	0.431
142	142	0.954
143	143	0.0127
144	144	0.876
145	145	0.133
146	146	0.457
147	147	0.725
148	148	0.595
149	149	0.493
15	15	0.0736
150	150	0.135
151	151	0.71
152	152	0.11
153	153	0.509
154	154	0.606
155	155	0.31
156	156	0.366
157	157	0.384
158	158	0.449
159	159	0.343
16	16	0.0798
160	160	0.269
161	161	0.268
162	162	0.947
163	163	0.933
164	164	0.00597
165	165	0.104
166	166	0.658
167	167	0.435
168	168	0.67
169	169	0.012
17	17	0.137
18	18	0.303
19	19	0.274
2	2	0.95
20	20	0.0423
21	21	0.0348
22	22	0.285
23	23	0.46
24	24	0.132
25	25	0.564
26	26	2.09811e-4
27	27	0.958
28	28	0.786
29	29	0.0103
3	3	0.018
30	30	0.557
31	31	0.896
32	32	0.0274
33	33	0.0617
34	34	0.74
35	35	0.614
36	36	0.107
37	37	0.0351
38	38	0.361
39	39	0.36
4	4	0.882
40	40	0.0441
41	41	0.546
42	42	0.13
43	43	0.108
44	44	0.486
45	45	0.816
46	46	0.0457
47	47	0.0889
48	48	0.0563
49	49	0.122
5	5	0.648
50	50	0.247
51	51	0.561
52	52	0.758
53	53	0.842
54	54	0.482
55	55	0.599
56	56	0.512
57	57	0.208
58	58	0.321
59	59	0.188
6	6	0.885
60	60	0.0862
61	61	0.0705
62	62	0.212
63	63	0.183
64	64	0.181
65	65	0.294
66	66	0.15
67	67	0.313
68	68	0.318
69	69	0.4
7	7	0.0804
70	70	0.0283
71	71	0.00658
72	72	0.427
73	73	0.0345
74	74	0.793
75	75	0.0169
76	76	0.218
77	77	0.242
78	78	0.00107
79	79	0.19
8	8	0.0806
80	80	0.715
81	81	0.633
82	82	0.587
83	83	0.281
84	84	0.542
85	85	0.338
86	86	0.216
87	87	0.0187
88	88	0.843
89	89	0.676
9	9	0.533
90	90	0.0737
91	91	0.299
92	92	0.375
93	93	0.787
94	94	0.0676
95	95	0.0302
96	96	0.824
97	97	0.642
98	98	0.123
99	99	0.81

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12610

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010193 human diencephalon - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001894 (diencephalon)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001890 (forebrain)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010193 (human diencephalon - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006222 (future diencephalon)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000922,UBERON:0000955,UBERON:0001894,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0002346,UBERON:0000073,UBERON:0004121,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0002616,UBERON:0001062,UBERON:0000119,UBERON:0005291,UBERON:0002780,UBERON:0006598,UBERON:0002532,UBERON:0001017,UBERON:0001016,UBERON:0000153,UBERON:0007811,UBERON:0000924,UBERON:0001890,UBERON:0005743,UBERON:0003075,UBERON:0003056,UBERON:0001049,UBERON:0006238,UBERON:0006601,UBERON:0005068,UBERON:0006241,UBERON:0003080,UBERON:0006240,UBERON:0006222,UBERON:0007284,UBERON:0007135
+|DRA_sample_Accession=CAGE@SAMD00004780
+|accession_numbers=CAGE;DRX008643;DRR009515;DRZ000940;DRZ002325;DRZ012290;DRZ013675
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001894,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001890
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010193
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.89!770.50!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.61!406.45!OLIG1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.47!291.66!PEG3;;chr22:38380543..38380569,-!p1@SOX10!2.28!187.41!SOX10;;chr11:61520075..61520136,+!p1@C11orf9!2.18!307.35!C11orf9;;chr21:34398234..34398250,+!p1@OLIG2!2.12!130.02!OLIG2;;chr3:181429704..181429722,+!p1@SOX2!1.89!76.14!SOX2;;chr8:53322304..53322340,-!p1@ST18!1.88!75.67!ST18;;chr2:145277882..145277967,-!p3@ZEB2!1.83!111.28!ZEB2;;chr21:34442540..34442560,+!p2@OLIG1!1.81!64.19!OLIG1;;chr10:134599649..134599653,-!p1@NKX6-2!1.75!55.05!NKX6-2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.72!52.01!POU3F3;;chr12:26277817..26277863,-!p2@BHLHE41!1.70!65.59!BHLHE41;;chr16:1031762..1031781,+!p1@SOX8!1.67!45.68!SOX8;;chr9:114287433..114287513,+!p1@ZNF483!1.62!102.84!ZNF483;;chr15:80735246..80735321,+!p3@ARNT2!1.60!38.65!ARNT2;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.59!37.48!SMARCE1;;chr14:29235961..29236008,+!p1@FOXG1!1.53!33.03!FOXG1;;chr8:40755333..40755352,-!p1@ZMAT4!1.53!32.80!ZMAT4;;chr3:181429741..181429767,+!p2@SOX2!1.52!32.09!SOX2;;chr17:53342311..53342400,+!p1@HLF!1.50!34.67!HLF;;chr1:214161272..214161322,+!p1@PROX1!1.47!39.36!PROX1;;chr2:60781201..60781258,-!p3@BCL11A!1.47!28.35!BCL11A;;chr10:48355030..48355090,+!p1@ZNF488!1.45!34.91!ZNF488;;chr14:29234581..29234601,+!p2@FOXG1!1.45!27.41!FOXG1;;chr12:26277956..26277980,-!p1@BHLHE41!1.44!92.77!BHLHE41;;chr10:64134120..64134183,+!p1@ZNF365!1.44!32.09!ZNF365;;chr9:77112244..77112262,+!p1@RORB!1.42!28.11!RORB;;chr2:73520667..73520683,-!p1@EGR4!1.41!24.60!EGR4;;chr12:106976774..106976788,+!p1@RFX4!1.41!24.60!RFX4;;chr8:53322347..53322378,-!p2@ST18!1.41!24.60!ST18;;chr2:2334997..2335053,-!p1@MYT1L!1.40!23.89!MYT1L;;chr2:166326200..166326216,+!p1@CSRNP3!1.39!33.97!CSRNP3;;chr19:30863271..30863338,+!p1@ZNF536!1.39!23.43!ZNF536;;chr6:19837592..19837621,+!p1@ID4!1.35!126.03!ID4;;chr12:54779511..54779577,-!p5@ZNF385A!1.33!20.38!ZNF385A;;chr19:57352109..57352153,-!p2@ZIM2!1.33!20.15!ZIM2;;chr15:80696703..80696754,+!p1@ARNT2!1.31!26.00!ARNT2;;chr14:33403881..33403924,+!p1@NPAS3!1.28!18.04!NPAS3;;chrX:82763292..82763317,+!p1@POU3F4!1.28!18.04!POU3F4;;chr1:165414325..165414369,-!p1@RXRG!1.28!18.04!RXRG;;chr1:2461692..2461710,-!p1@HES5!1.27!17.80!HES5;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.27!17.80!POU3F3;;chr4:81118647..81118666,+!p1@PRDM8!1.26!22.72!PRDM8;;chrY:21906594..21906622,-!p1@KDM5D!1.26!17.34!KDM5D;;chr12:106976678..106976708,+!p2@RFX4!1.25!16.63!RFX4;;chr19:13135386..13135435,+!p4@NFIX!1.24!16.40!NFIX;;chr4:26344778..26344807,+!p8@RBPJ!1.23!15.93!RBPJ;;chr16:51185172..51185197,-!p1@SALL1!1.22!15.70!SALL1;;chr10:111987079..111987115,+!p3@MXI1!1.19!19.68!MXI1;;chr21:34442584..34442587,+!p3@OLIG1!1.19!14.52!OLIG1;;chrX:25034067..25034088,-!p1@ARX!1.18!14.29!ARX;;chr10:114889016..114889037,+!p15@TCF7L2!1.16!13.35!TCF7L2;;chr2:145275982..145276003,-!p7@ZEB2!1.16!13.35!ZEB2;;chr8:80679993..80680011,-!p1@HEY1!1.15!19.21!HEY1;;chr6:126070769..126070801,+!p1@HEY2!1.15!15.23!HEY2;;chr16:85932760..85932775,+!p1@IRF8!1.14!12.88!IRF8;;chr22:41763452..41763466,+!p2@TEF!1.14!12.65!TEF;;chr10:64133862..64133884,+!p4@ZNF365!1.12!12.18!ZNF365;;chr2:239148671..239148686,-!p1@HES6!1.11!43.34!HES6;;chr11:31832862..31832884,-!p2@PAX6!1.11!11.95!PAX6;;chr12:26277929..26277955,-!p3@BHLHE41!1.10!16.63!BHLHE41;;chr3:147127142..147127168,+!p1@ZIC1!1.10!11.71!ZIC1;;chr17:38219209..38219230,+!p1@THRA!1.09!149.23!THRA;;chr1:61548069..61548102,+!p3@NFIA!1.09!27.64!NFIA;;chr16:51185318..51185348,-!p2@SALL1!1.09!11.24!SALL1;;chr3:126076242..126076257,-!p1@KLF15!1.08!13.82!KLF15;;chr12:54785074..54785122,-!p2@ZNF385A!1.07!16.63!ZNF385A;;chr3:52001396..52001425,-!p4@PCBP4!1.06!18.98!PCBP4;;chr2:177053386..177053402,+!p1@HOXD1!1.06!10.54!HOXD1;;chr13:72441315..72441454,-!p1@DACH1!1.05!20.85!DACH1;;chr10:114886551..114886601,+!p11@TCF7L2!1.05!10.31!TCF7L2;;chr10:114889045..114889074,+!p12@TCF7L2!1.05!10.31!TCF7L2;;chr11:47400078..47400106,-!p1@SPI1!1.05!10.31!SPI1;;chr10:114886432..114886455,+!p20@TCF7L2!1.03!9.84!TCF7L2;;chr12:103351444..103351461,+!p1@ASCL1!1.03!9.84!ASCL1;;chr19:46801639..46801699,+!p1@HIF3A!1.03!9.84!HIF3A;;chr20:42574529..42574563,+!p3@TOX2!1.03!9.84!TOX2;;chr2:95963052..95963106,+!p1@KCNIP3!1.03!9.84!KCNIP3;;chr4:26344754..26344772,+!p10@RBPJ!1.03!9.84!RBPJ;;chr3:147127177..147127194,+!p2@ZIC1!1.03!9.60!ZIC1;;chr4:57522166..57522260,-!p2@HOPX!1.02!11.01!HOPX;;chr7:96654133..96654150,-!p1@DLX5!1.02!9.37!DLX5;;chr16:79634624..79634642,-!p1@MAF!1.01!37.25!MAF;;chr12:54778471..54778528,-!p1@ZNF385A!1.01!9.14!ZNF385A;;chr19:53636125..53636178,-!p1@ZNF415!1.00!26.00!ZNF415;;chr19:57183114..57183145,-!p1@ZNF835!1.00!10.07!ZNF835;;chr19:13135582..13135600,+!p3@NFIX!1.00!8.90!NFIX;;chr2:95963120..95963136,+!p2@KCNIP3!1.00!8.90!KCNIP3;;chrX:85969626..85969664,+!p1@DACH2!1.00!8.90!DACH2;;chr9:126774018..126774055,+!p1@LHX2!1.00!8.90!LHX2;;chr8:145560111..145560165,-!p2@SCRT1!1.00!8.90!SCRT1;;chr19:49140609..49140643,-!p1@DBP!0.99!50.60!DBP;;chr11:113930425..113930471,+!p1@ZBTB16!0.99!12.65!ZBTB16;;chr11:8102846..8102892,+!p1@TUB!0.99!12.42!TUB;;chr14:33408072..33408114,+!p2@NPAS3!0.99!10.54!NPAS3;;chr4:57547454..57547469,-!p1@HOPX!0.99!8.67!HOPX;;chr20:21494654..21494678,-!p2@NKX2-2!0.99!8.67!NKX2-2;;chr2:178128250..178128293,-!p6@NFE2L2!0.98!22.26!NFE2L2;;chr17:7492684..7492778,-!p2@SOX15!0.97!17.80!SOX15;;chr7:28725740..28725778,+!p1@CREB5!0.96!74.26!CREB5;;chr20:62680984..62680999,-!p1@SOX18!0.96!10.78!SOX18;;chr10:119302232..119302265,+!p1@EMX2!0.96!8.20!EMX2;;chr8:145560371..145560449,-!p1@SCRT1!0.96!8.20!SCRT1;;chr17:17726907..17726958,-!p2@SREBF1!0.95!50.13!SREBF1;;chr19:13134772..13134822,+!p2@NFIX!0.95!11.71!NFIX;;chr19:49139477..49139552,-!p4@DBP!0.95!10.31!DBP;;chr19:38720294..38720348,-!p1@DPF1!0.95!10.07!DPF1;;chr17:74137321..74137337,-!p1@FOXJ1!0.95!7.96!FOXJ1;;chr2:45168875..45168916,+!p1@SIX3!0.95!7.96!SIX3;;chr14:21994337..21994442,-!p1@SALL2!0.94!21.79!SALL2;;chr19:38085768..38085821,+!p1@ZNF540!0.94!11.71!ZNF540;;chr3:126076264..126076305,-!p2@KLF15!0.94!11.01!KLF15;;chr8:80680024..80680046,-!p2@HEY1!0.94!8.67!HEY1;;chr18:55102598..55102623,+!p1@ONECUT2!0.94!7.73!ONECUT2;;chr11:85393886..85393913,-!p3@CREBZF!0.93!7.50!CREBZF;;chr14:33403648..33403710,+!p3@NPAS3!0.93!7.50!NPAS3;;chr2:145277640..145277771,-!p1@ZEB2!0.92!102.37!ZEB2;;chr22:41763274..41763318,+!p3@TEF!0.92!7.26!TEF;;chr6:99282475..99282501,+!p1@POU3F2!0.92!7.26!POU3F2;;chr7:63505799..63505904,+!p1@ZNF727!0.92!7.26!ZNF727;;chr3:52001426..52001447,-!p3@PCBP4!0.91!20.85!PCBP4;;chr15:57511609..57511651,+!p2@TCF12!0.91!12.18!TCF12;;chr2:180726331..180726344,-!p5@ZNF385B!0.90!7.03!ZNF385B;;chr11:31832658..31832681,-!p1@PAX6!0.90!7.03!PAX6;;chr7:14026022..14026044,-!p7@ETV1!0.90!7.03!ETV1;;chr17:70117153..70117174,+!p1@SOX9!0.89!73.32!SOX9;;chr22:41777927..41777971,+!p1@TEF!0.89!59.27!TEF;;chr15:80696836..80696853,+!p7@ARNT2!0.89!6.79!ARNT2;;chr12:103352277..103352324,+!p2@ASCL1!0.89!6.79!ASCL1;;chr13:95364784..95364806,-!p1@SOX21!0.89!6.79!SOX21;;chr5:88178983..88179012,-!p1@MEF2C!0.88!53.88!MEF2C;;chr10:38265517..38265591,-!p1@ZNF25!0.88!26.47!ZNF25;;chr7:150974206..150974255,-!p1@SMARCD3!0.87!41.93!SMARCD3;;chr8:22550982..22550999,-!p1@EGR3!0.87!18.98!EGR3;;chr15:61521417..61521460,-!p2@RORA!0.86!14.52!RORA;;chr14:29236269..29236285,+!p3@FOXG1!0.86!6.33!FOXG1;;chr2:105470714..105470723,+!p@chr2:105470714..105470723,+!0.86!6.33!POU3F3;;chr2:145275947..145275981,-!p10@ZEB2!0.86!6.33!ZEB2;;chr2:2328299..2328363,-!p3@MYT1L!0.86!6.33!MYT1L;;chr7:96635178..96635181,+!p1@DLX6!0.86!6.33!DLX6;;chr17:38256822..38256851,-!p1@NR1D1!0.85!50.37!NR1D1;;chr14:73360799..73360817,-!p1@DPF3!0.85!22.26!DPF3;;chr12:106976656..106976672,+!p4@RFX4!0.85!6.09!RFX4;;chr13:72441074..72441172,-!p2@DACH1!0.85!6.09!DACH1;;chr14:22005197..22005261,-!p3@SALL2!0.85!6.09!SALL2;;chr15:61521495..61521506,-!p5@RORA!0.85!6.09!RORA;;chr15:80696666..80696700,+!p4@ARNT2!0.85!6.09!ARNT2;;chr16:30418387..30418422,+!p4@ZNF771!0.85!6.09!ZNF771;;chr2:68592406..68592424,+!p1@PLEK!0.85!6.09!PLEK;;chr3:114173720..114173794,-!p6@ZBTB20!0.85!6.09!ZBTB20;;chr3:114819101..114819121,-!p7@ZBTB20!0.85!6.09!ZBTB20;;chr7:14029283..14029311,-!p1@ETV1!0.84!33.73!ETV1;;chr15:60884706..60884743,-!p1@RORA!0.84!32.80!RORA;;chr19:33793430..33793447,-!p1@CEBPA!0.84!26.47!CEBPA;;chr7:113726357..113726443,+!p1@FOXP2!0.84!10.54!FOXP2;;chr14:75894391..75894435,+!p2@JDP2!0.84!6.79!JDP2;;chr18:53068911..53068935,-!p4@TCF4!0.84!6.79!TCF4;;chr3:141105235..141105307,+!p7@ZBTB38!0.84!5.86!ZBTB38;;chr20:21494684..21494708,-!p1@NKX2-2!0.84!5.86!NKX2-2;;chr9:1050331..1050363,+!p1@DMRT2!0.84!5.86!DMRT2;;chr17:38219143..38219154,+!p2@THRA!0.83!21.55!THRA;;chr19:49140572..49140594,-!p2@DBP!0.83!9.37!DBP;;chr2:145274998..145275012,-!p13@ZEB2!0.83!6.56!ZEB2;;chr1:38512457..38512474,-!p1@POU3F1!0.83!6.33!POU3F1;;chr6:126112074..126112144,+!p1@NCOA7!0.82!81.52!NCOA7;;chrX:101186981..101187030,-!p1@ZMAT1!0.82!19.44!ZMAT1;;chr1:61547894..61547968,+!p2@NFIA!0.82!17.34!NFIA;;chr3:114819124..114819200,-!p3@ZBTB20!0.82!13.82!ZBTB20;;chr2:214016314..214016343,-!p2@IKZF2!0.82!9.84!IKZF2;;chr6:1312325..1312340,+!p1@FOXQ1!0.82!9.37!FOXQ1;;chr6:126112039..126112062,+!p8@NCOA7!0.82!6.79!NCOA7;;chrX:107019163..107019179,-!p7@TSC22D3!0.82!6.56!TSC22D3;;chr8:22550530..22550609,-!p2@EGR3!0.82!5.62!EGR3;;chr19:58545454..58545498,+!p1@ZSCAN1!0.82!5.62!ZSCAN1;;chr14:58798013..58798071,+!p2@ARID4A!0.82!5.62!ARID4A;;chr2:45168959..45168990,+!p6@SIX3!0.82!5.62!SIX3;;chr15:80696410..80696477,+!p6@ARNT2!0.82!5.62!ARNT2;;chr1:151032860..151032918,+!p1@MLLT11!0.81!70.51!MLLT11;;chrX:70315688..70315709,+!p1@FOXO4!0.81!13.59!FOXO4;;chr6:41701557..41701578,-!p3@TFEB!0.81!5.39!TFEB;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!0.81!5.39!POU3F3;;chr3:181429641..181429650,+!p3@SOX2!0.81!5.39!SOX2;;chr14:58797974..58798011,+!p3@ARID4A!0.81!5.39!ARID4A;;chr19:38183208..38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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001894
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006222,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/diencephalon%252c%2520adult.CNhs12610.10193-103E4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/diencephalon%252c%2520adult.CNhs12610.10193-103E4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/diencephalon%252c%2520adult.CNhs12610.10193-103E4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/diencephalon%252c%2520adult.CNhs12610.10193-103E4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/diencephalon%252c%2520adult.CNhs12610.10193-103E4.hg38.nobarcode.ctss.bed.gz
 |id=FF:10193-103E4
-|is_a=EFO:0002091;;FF:0000004;;FF:0000210;;FF:0010193
+|is_a=EFO:0002091;;FF:0010193
+|is_obsolete=
+|library_id=CNhs12610
+|library_id_phase_based=2:CNhs12610
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10193
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10193
 |name=diencephalon, adult
 |namespace=FANTOM5
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12610,LSID952,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=103
 |rna_catalog_number=R1234049-10
@@ Line 54: / Line 76: @@
 |rna_rin=
 |rna_sample_type=
-|rna_tube_id=103E4
+|rna_tube_id=1.03E+06
 |rna_weight_ug=10
 |sample_age=26
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 77: / Line 100: @@
 |sample_tissue=diencephalon
 |top_motifs=REST:3.61968619945;NHLH1,2:3.39339883031;MYFfamily:3.33596663605;SOX5:3.22053027218;SOX2:3.12523877894;NFIX:3.07701292766;ZBTB6:3.00256723624;HOXA9_MEIS1:2.8774093883;ZFP161:2.85692641485;MED-1{core}:2.82097197975;EGR1..3:2.70521011709;RFX1:2.70242889713;OCT4_SOX2{dimer}:2.6537910759;MTE{core}:2.64990428186;SOX17:2.5993076427;POU6F1:2.54535526867;SOX{8,9,10}:2.54151826158;XBP1:2.49321473624;NKX3-2:2.48353832334;CUX2:2.46816866313;PAX5:2.46186564024;ARID5B:2.45097540542;MAFB:2.45045418655;MTF1:2.44525063843;ATF2:2.40618020671;GATA4:2.39642376241;CDC5L:2.38992296717;PRRX1,2:2.35041116032;KLF4:2.34548389344;HIC1:2.30344581896;RBPJ:2.24279327695;FOXM1:2.24229410435;RFX2..5_RFXANK_RFXAP:2.23704645447;DBP:2.2254154802;GTF2I:2.14139398355;PRDM1:2.13857916914;SMAD1..7,9:2.08711507006;LMO2:2.06185224989;TFAP2B:2.04198090172;MZF1:1.92863316963;JUN:1.92538722934;HOX{A4,D4}:1.85624283026;ONECUT1,2:1.84927677751;PATZ1:1.83505551546;FOXP3:1.76637733466;RREB1:1.73018039033;POU5F1:1.70310159009;PAX6:1.66749461624;HBP1_HMGB_SSRP1_UBTF:1.66273456493;MAZ:1.64192656637;LEF1_TCF7_TCF7L1,2:1.62594899743;TGIF1:1.56623120841;BREu{core}:1.54873304053;AHR_ARNT_ARNT2:1.53988855155;NKX6-1,2:1.53983316394;ESRRA:1.50327813413;EP300:1.47263566579;PDX1:1.39066193016;GCM1,2:1.38493741981;GFI1B:1.38407645478;NRF1:1.37430346082;NKX2-3_NKX2-5:1.31431890493;NANOG:1.30935366901;EBF1:1.26364119935;HAND1,2:1.24310028111;CRX:1.21259684569;TFAP2{A,C}:1.20286191121;FOX{F1,F2,J1}:1.16728975795;VSX1,2:1.15840707042;SPZ1:1.15546285165;ZNF423:1.10707457592;NFIL3:1.08712858328;TFDP1:1.04467427327;FOXD3:1.03155658005;AR:0.990748650888;ALX1:0.965199884444;MYOD1:0.954144966218;ZNF384:0.951149373181;SREBF1,2:0.946513514069;NR3C1:0.92581546683;MYBL2:0.914260488056;T:0.877839548236;FOXQ1:0.873579052326;RORA:0.845510089832;ZNF143:0.840680454595;TLX2:0.819481167304;CREB1:0.803998624917;GTF2A1,2:0.798660225555;SP1:0.783130257791;ADNP_IRX_SIX_ZHX:0.763966896919;GFI1:0.747926839806;PBX1:0.742470166033;LHX3,4:0.68372887172;YY1:0.637811968018;ZIC1..3:0.607340224481;ZEB1:0.546554212097;TLX1..3_NFIC{dimer}:0.532578851608;GZF1:0.519002953302;HMGA1,2:0.497757467299;STAT1,3:0.49671352607;FOXO1,3,4:0.468799572089;PAX1,9:0.458617457547;IKZF2:0.419578835667;NR1H4:0.405484049465;TFAP4:0.355839747564;NR5A1,2:0.34790278701;HOX{A6,A7,B6,B7}:0.347662912254;UFEwm:0.335408296917;NFE2L1:0.325929581908;POU3F1..4:0.316151260939;ZNF238:0.312173776189;FOX{D1,D2}:0.308699626579;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.303201925676;FOX{I1,J2}:0.283953340766;FOXN1:0.263206650675;HMX1:0.243160645665;bHLH_family:0.209272047164;MEF2{A,B,C,D}:0.20867236279;BPTF:0.164699735748;ATF5_CREB3:0.158301434839;TBX4,5:0.144641671923;FOXP1:0.112496745969;IRF7:0.0604957862224;NKX2-2,8:0.0555329336198;NFY{A,B,C}:0.0347730584995;NFE2L2:0.0114133683569;STAT2,4,6:0.0109019909019;ATF4:-0.0233032884231;PAX8:-0.0236734227029;PAX2:-0.0704624992441;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0711653095979;FOXL1:-0.0715260839578;XCPE1{core}:-0.115207495717;ZBTB16:-0.148810197715;HSF1,2:-0.154638380717;IRF1,2:-0.155282694204;IKZF1:-0.179652750775;TEF:-0.191296004349;PAX4:-0.194517867064;SNAI1..3:-0.219603855341;TFCP2:-0.241008947996;SPI1:-0.322227291816;CDX1,2,4:-0.372355835849;DMAP1_NCOR{1,2}_SMARC:-0.373192817336;RXR{A,B,G}:-0.407856957389;POU1F1:-0.441738699347;HES1:-0.452740258902;HNF4A_NR2F1,2:-0.460474405397;NANOG{mouse}:-0.466034031851;ESR1:-0.47998584215;NFATC1..3:-0.560855121585;TP53:-0.638994963569;HNF1A:-0.646096304819;CEBPA,B_DDIT3:-0.712902137328;SPIB:-0.739827023501;GATA6:-0.76648447964;ATF6:-0.781603709286;NFE2:-0.785368924357;ETS1,2:-0.803899002654;ALX4:-0.808939504469;ZNF148:-0.824023815465;ELK1,4_GABP{A,B1}:-0.824305671186;PAX3,7:-0.895336995441;EVI1:-0.932440379472;FOSL2:-0.933466037281;TOPORS:-0.965437714696;RUNX1..3:-1.00284714357;FOXA2:-1.01038833621;TBP:-1.0211570609;NKX3-1:-1.0247750736;MYB:-1.04496968093;HIF1A:-1.04598813754;GLI1..3:-1.07802761846;BACH2:-1.08038989883;FOS_FOS{B,L1}_JUN{B,D}:-1.10013256781;TEAD1:-1.10980983435;NFKB1_REL_RELA:-1.12329884953;NKX2-1,4:-1.16945967458;E2F1..5:-1.29411732095;HLF:-1.30920419997;NR6A1:-1.30930004123;SRF:-1.41635047819;RXRA_VDR{dimer}:-1.41920811867;AIRE:-1.49141137581;POU2F1..3:-1.4948686024;TAL1_TCF{3,4,12}:-1.53875622664;ELF1,2,4:-1.58699070284;STAT5{A,B}:-1.71450412269;EN1,2:-1.8360263223;PITX1..3:-2.07613398988;HOX{A5,B5}:-2.67656285574;PPARG:-2.96779512673
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10193-103E4;search_select_hide=table117:FF:10193-103E4
 }}

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FF:10193-103E4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:26, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0