FF:10193-103E4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004780 | ||
|accession_numbers=CAGE;DRX008643;DRR009515;DRZ000940;DRZ002325;DRZ012290;DRZ013675 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001894,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001890 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010193 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/diencephalon%252c%2520adult.CNhs12610.10193-103E4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/diencephalon%252c%2520adult.CNhs12610.10193-103E4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/diencephalon%252c%2520adult.CNhs12610.10193-103E4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/diencephalon%252c%2520adult.CNhs12610.10193-103E4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/diencephalon%252c%2520adult.CNhs12610.10193-103E4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10193-103E4 | |id=FF:10193-103E4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010193 | ||
|is_obsolete= | |||
|library_id=CNhs12610 | |||
|library_id_phase_based=2:CNhs12610 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10193 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10193 | |||
|name=diencephalon, adult | |name=diencephalon, adult | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12610,LSID952,release012,COMPLETED | |profile_hcage=CNhs12610,LSID952,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number=R1234049-10 | |rna_catalog_number=R1234049-10 | ||
| Line 54: | Line 76: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type= | |rna_sample_type= | ||
|rna_tube_id= | |rna_tube_id=1.03E+06 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age=26 | |sample_age=26 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.61077254526019e-278!GO:0005737;cytoplasm;2.17371703256968e-171!GO:0044444;cytoplasmic part;1.08975057568742e-120!GO:0043226;organelle;6.76733085061354e-97!GO:0043229;intracellular organelle;2.19494679225733e-96!GO:0043227;membrane-bound organelle;7.24211400157534e-91!GO:0043231;intracellular membrane-bound organelle;1.27401495851753e-90!GO:0044422;organelle part;2.01131579674932e-74!GO:0044446;intracellular organelle part;2.47746250553851e-73!GO:0032991;macromolecular complex;3.69236880476301e-67!GO:0005515;protein binding;5.21553691597313e-58!GO:0005739;mitochondrion;2.71156571432403e-53!GO:0030529;ribonucleoprotein complex;9.60697656172917e-52!GO:0031090;organelle membrane;3.1753635039833e-44!GO:0003723;RNA binding;2.5225522786105e-42!GO:0016043;cellular component organization and biogenesis;1.15752453847081e-41!GO:0044429;mitochondrial part;3.76346173732404e-39!GO:0033036;macromolecule localization;5.55669053831895e-38!GO:0015031;protein transport;5.61974356800425e-38!GO:0043234;protein complex;1.77363103544341e-35!GO:0008104;protein localization;3.55046363351462e-35!GO:0045184;establishment of protein localization;1.43706844080316e-34!GO:0043233;organelle lumen;1.72341378920095e-33!GO:0031974;membrane-enclosed lumen;1.72341378920095e-33!GO:0005840;ribosome;1.68190589697087e-31!GO:0031975;envelope;3.39122650895332e-31!GO:0031967;organelle envelope;4.87067581169654e-31!GO:0005829;cytosol;1.15570277074898e-30!GO:0046907;intracellular transport;8.53252951362349e-30!GO:0044428;nuclear part;3.0304336799108e-28!GO:0003735;structural constituent of ribosome;1.61382134012584e-26!GO:0005740;mitochondrial envelope;2.2013105753835e-26!GO:0019538;protein metabolic process;2.36502445114238e-26!GO:0051641;cellular localization;3.01618707607237e-26!GO:0044238;primary metabolic process;3.68771404079233e-26!GO:0051649;establishment of cellular localization;4.57403381124045e-26!GO:0044237;cellular metabolic process;1.57669507611727e-25!GO:0031966;mitochondrial membrane;1.66971054394819e-25!GO:0016071;mRNA metabolic process;4.34382629211052e-25!GO:0016192;vesicle-mediated transport;7.90612657542236e-25!GO:0006396;RNA processing;2.03928046187684e-24!GO:0006119;oxidative phosphorylation;3.00528749538992e-24!GO:0008380;RNA splicing;3.00528749538992e-24!GO:0006412;translation;5.00922998900479e-24!GO:0044260;cellular macromolecule metabolic process;9.0246640787318e-24!GO:0019866;organelle inner membrane;1.54033436499522e-23!GO:0009058;biosynthetic process;1.92189141197019e-23!GO:0033279;ribosomal subunit;2.07068064114695e-23!GO:0044267;cellular protein metabolic process;7.20235867093303e-23!GO:0005743;mitochondrial inner membrane;9.06229045829378e-23!GO:0006886;intracellular protein transport;2.0125487177698e-21!GO:0006397;mRNA processing;3.31423821086553e-21!GO:0043170;macromolecule metabolic process;9.26845482136533e-21!GO:0044249;cellular biosynthetic process;7.89381245715033e-20!GO:0044455;mitochondrial membrane part;1.44760649957437e-19!GO:0009059;macromolecule biosynthetic process;3.93490446490546e-19!GO:0005794;Golgi apparatus;8.37306319525586e-19!GO:0006996;organelle organization and biogenesis;1.46264307862129e-18!GO:0005746;mitochondrial respiratory chain;4.52521857839477e-18!GO:0031982;vesicle;1.21469802969654e-17!GO:0065003;macromolecular complex assembly;2.17690378212676e-17!GO:0031410;cytoplasmic vesicle;7.1887791166072e-17!GO:0050136;NADH dehydrogenase (quinone) activity;7.39683281596454e-17!GO:0003954;NADH dehydrogenase activity;7.39683281596454e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.39683281596454e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.86764409711976e-17!GO:0005681;spliceosome;8.56244506041635e-17!GO:0012505;endomembrane system;1.43873509963869e-16!GO:0031988;membrane-bound vesicle;1.86443523107474e-16!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.31894115872874e-16!GO:0031981;nuclear lumen;3.4923885513201e-16!GO:0031980;mitochondrial lumen;7.08340068458611e-16!GO:0005759;mitochondrial matrix;7.08340068458611e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.95418524341627e-16!GO:0016023;cytoplasmic membrane-bound vesicle;1.14483091604406e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.20311360473263e-15!GO:0044445;cytosolic part;1.22127393899829e-15!GO:0016462;pyrophosphatase activity;1.53630718206965e-15!GO:0022607;cellular component assembly;1.9157482960501e-15!GO:0005634;nucleus;2.05184233476668e-15!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.45629035437708e-15!GO:0030964;NADH dehydrogenase complex (quinone);7.45629035437708e-15!GO:0045271;respiratory chain complex I;7.45629035437708e-15!GO:0005747;mitochondrial respiratory chain complex I;7.45629035437708e-15!GO:0042775;organelle ATP synthesis coupled electron transport;1.28112243665378e-14!GO:0042773;ATP synthesis coupled electron transport;1.28112243665378e-14!GO:0017111;nucleoside-triphosphatase activity;1.36852967485074e-14!GO:0000166;nucleotide binding;1.70565421442357e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.53787697453147e-14!GO:0006457;protein folding;2.93162402761434e-14!GO:0006512;ubiquitin cycle;3.29655429720098e-13!GO:0048770;pigment granule;1.03186312188408e-12!GO:0042470;melanosome;1.03186312188408e-12!GO:0016874;ligase activity;1.60083724069496e-12!GO:0015934;large ribosomal subunit;2.10172430403666e-12!GO:0022618;protein-RNA complex assembly;3.48492005096961e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.13336338555777e-12!GO:0015935;small ribosomal subunit;7.70272629330929e-12!GO:0005783;endoplasmic reticulum;1.15896193774907e-11!GO:0051082;unfolded protein binding;1.18427184396935e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.9225572144425e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;6.78741272376044e-11!GO:0000502;proteasome complex (sensu Eukaryota);7.68803204587023e-11!GO:0019941;modification-dependent protein catabolic process;1.12957291016189e-10!GO:0043632;modification-dependent macromolecule catabolic process;1.12957291016189e-10!GO:0019829;cation-transporting ATPase activity;1.17376026039099e-10!GO:0044257;cellular protein catabolic process;1.26512402426036e-10!GO:0006511;ubiquitin-dependent protein catabolic process;1.3406291077988e-10!GO:0044248;cellular catabolic process;1.67578698542337e-10!GO:0008135;translation factor activity, nucleic acid binding;2.09145355601532e-10!GO:0032553;ribonucleotide binding;2.25499229503361e-10!GO:0032555;purine ribonucleotide binding;2.25499229503361e-10!GO:0048193;Golgi vesicle transport;2.35246076052475e-10!GO:0044265;cellular macromolecule catabolic process;2.35937947503253e-10!GO:0043412;biopolymer modification;2.83378131739219e-10!GO:0003924;GTPase activity;3.09001013104306e-10!GO:0045045;secretory pathway;4.86920692532252e-10!GO:0006605;protein targeting;5.45756149923825e-10!GO:0043228;non-membrane-bound organelle;6.01147300438471e-10!GO:0043232;intracellular non-membrane-bound organelle;6.01147300438471e-10!GO:0017076;purine nucleotide binding;6.05836142038755e-10!GO:0005761;mitochondrial ribosome;6.57933647869858e-10!GO:0000313;organellar ribosome;6.57933647869858e-10!GO:0006810;transport;7.50736392394796e-10!GO:0016044;membrane organization and biogenesis;7.51394238555491e-10!GO:0006464;protein modification process;9.15555811660483e-10!GO:0051186;cofactor metabolic process;1.07290916149226e-09!GO:0005654;nucleoplasm;1.12178678774412e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.2531129707931e-09!GO:0007264;small GTPase mediated signal transduction;1.27736352344929e-09!GO:0005768;endosome;1.81482551250949e-09!GO:0044431;Golgi apparatus part;2.76006867681801e-09!GO:0005525;GTP binding;3.15229583525438e-09!GO:0043687;post-translational protein modification;3.38499255724856e-09!GO:0008565;protein transporter activity;3.72958609245138e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.60323639666104e-09!GO:0043285;biopolymer catabolic process;7.21734115902064e-09!GO:0015986;ATP synthesis coupled proton transport;7.87931764244991e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.87931764244991e-09!GO:0043283;biopolymer metabolic process;7.95708390203425e-09!GO:0044451;nucleoplasm part;9.33191569410336e-09!GO:0030163;protein catabolic process;1.09221149116321e-08!GO:0008092;cytoskeletal protein binding;1.09221149116321e-08!GO:0030135;coated vesicle;1.55098191125762e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;1.8079228340302e-08!GO:0000375;RNA splicing, via transesterification reactions;1.8079228340302e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.8079228340302e-08!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.90329251147595e-08!GO:0009057;macromolecule catabolic process;4.63566394943501e-08!GO:0009055;electron carrier activity;4.86101239551331e-08!GO:0044432;endoplasmic reticulum part;5.14575012932407e-08!GO:0032561;guanyl ribonucleotide binding;5.217503861504e-08!GO:0019001;guanyl nucleotide binding;5.217503861504e-08!GO:0006446;regulation of translational initiation;6.53094783783983e-08!GO:0006163;purine nucleotide metabolic process;7.1167337040277e-08!GO:0030695;GTPase regulator activity;7.1167337040277e-08!GO:0006413;translational initiation;7.85661497627097e-08!GO:0003743;translation initiation factor activity;9.10959206843287e-08!GO:0046034;ATP metabolic process;1.15086911844757e-07!GO:0006793;phosphorus metabolic process;1.20461948703099e-07!GO:0006796;phosphate metabolic process;1.20461948703099e-07!GO:0051179;localization;1.2152241162635e-07!GO:0009060;aerobic respiration;1.27317007939409e-07!GO:0006164;purine nucleotide biosynthetic process;1.31755340602319e-07!GO:0051234;establishment of localization;1.36039803067075e-07!GO:0008639;small protein conjugating enzyme activity;1.38252721670839e-07!GO:0009150;purine ribonucleotide metabolic process;1.45859901940995e-07!GO:0010467;gene expression;1.48440415769936e-07!GO:0009141;nucleoside triphosphate metabolic process;1.54975891064223e-07!GO:0045333;cellular respiration;1.80527765463028e-07!GO:0008134;transcription factor binding;1.89687490726901e-07!GO:0019787;small conjugating protein ligase activity;2.16992692284916e-07!GO:0007010;cytoskeleton organization and biogenesis;2.38328426110118e-07!GO:0015631;tubulin binding;2.56301403615776e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.63911425744456e-07!GO:0004842;ubiquitin-protein ligase activity;2.76339211537868e-07!GO:0006754;ATP biosynthetic process;2.86087925751193e-07!GO:0006753;nucleoside phosphate metabolic process;2.86087925751193e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.86087925751193e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.86087925751193e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.72147889585676e-07!GO:0016469;proton-transporting two-sector ATPase complex;3.84599093191999e-07!GO:0000139;Golgi membrane;4.13630737071049e-07!GO:0009259;ribonucleotide metabolic process;4.26134439967197e-07!GO:0015078;hydrogen ion transmembrane transporter activity;5.93638536090352e-07!GO:0006461;protein complex assembly;6.07456802725002e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.70282018322241e-07!GO:0048471;perinuclear region of cytoplasm;7.48935786269173e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.95448658180558e-07!GO:0006732;coenzyme metabolic process;7.95448658180558e-07!GO:0043005;neuron projection;9.16226074697823e-07!GO:0005789;endoplasmic reticulum membrane;9.29547118850205e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.05814929859928e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.05814929859928e-06!GO:0005730;nucleolus;1.1428982918879e-06!GO:0007399;nervous system development;1.17292324143006e-06!GO:0032940;secretion by cell;1.17773666895183e-06!GO:0009056;catabolic process;1.23550224503543e-06!GO:0009260;ribonucleotide biosynthetic process;1.24295925518665e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.37751995336097e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.37751995336097e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.40686486079351e-06!GO:0045259;proton-transporting ATP synthase complex;1.46610472084645e-06!GO:0031252;leading edge;1.48220926447786e-06!GO:0016881;acid-amino acid ligase activity;1.55662064076741e-06!GO:0044440;endosomal part;1.80739778973445e-06!GO:0010008;endosome membrane;1.80739778973445e-06!GO:0006897;endocytosis;1.82315504028016e-06!GO:0010324;membrane invagination;1.82315504028016e-06!GO:0016604;nuclear body;1.99020886991753e-06!GO:0016607;nuclear speck;3.0514385222459e-06!GO:0005083;small GTPase regulator activity;3.61158277007005e-06!GO:0008287;protein serine/threonine phosphatase complex;3.66681683946249e-06!GO:0005635;nuclear envelope;3.72406486741742e-06!GO:0005770;late endosome;3.87147727205806e-06!GO:0006099;tricarboxylic acid cycle;3.88754149616559e-06!GO:0046356;acetyl-CoA catabolic process;3.88754149616559e-06!GO:0031965;nuclear membrane;4.27702204536524e-06!GO:0005905;coated pit;4.54318470798315e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.63777212996888e-06!GO:0005769;early endosome;4.72382891794038e-06!GO:0030136;clathrin-coated vesicle;6.75446187828189e-06!GO:0048475;coated membrane;6.86655329186927e-06!GO:0030117;membrane coat;6.86655329186927e-06!GO:0019717;synaptosome;7.39248613862119e-06!GO:0015630;microtubule cytoskeleton;7.71920322658688e-06!GO:0016887;ATPase activity;8.98927343930582e-06!GO:0030036;actin cytoskeleton organization and biogenesis;9.42741300168732e-06!GO:0042623;ATPase activity, coupled;9.75767116698811e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.01379845839725e-05!GO:0006084;acetyl-CoA metabolic process;1.14935076958397e-05!GO:0006913;nucleocytoplasmic transport;1.20167762636061e-05!GO:0009109;coenzyme catabolic process;1.456237052328e-05!GO:0051169;nuclear transport;1.66208278668963e-05!GO:0019899;enzyme binding;1.68789510511013e-05!GO:0005773;vacuole;1.77063794124935e-05!GO:0008017;microtubule binding;2.38958891524826e-05!GO:0051187;cofactor catabolic process;3.12039592970764e-05!GO:0032559;adenyl ribonucleotide binding;3.40454284338126e-05!GO:0016310;phosphorylation;3.51590716747314e-05!GO:0032446;protein modification by small protein conjugation;3.56900630724633e-05!GO:0005874;microtubule;5.17352696506076e-05!GO:0051246;regulation of protein metabolic process;5.27256877907074e-05!GO:0000245;spliceosome assembly;6.16977131413984e-05!GO:0030120;vesicle coat;6.43254980350457e-05!GO:0030662;coated vesicle membrane;6.43254980350457e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;7.11907211531953e-05!GO:0015399;primary active transmembrane transporter activity;7.11907211531953e-05!GO:0030029;actin filament-based process;7.20188718203508e-05!GO:0017038;protein import;7.55124669057059e-05!GO:0030554;adenyl nucleotide binding;7.62449760063008e-05!GO:0016567;protein ubiquitination;7.85253263617335e-05!GO:0007242;intracellular signaling cascade;8.04149600071943e-05!GO:0051188;cofactor biosynthetic process;9.10540772046791e-05!GO:0005524;ATP binding;9.10540772046791e-05!GO:0022890;inorganic cation transmembrane transporter activity;9.74991647195155e-05!GO:0008654;phospholipid biosynthetic process;0.000107114834234435!GO:0008047;enzyme activator activity;0.000108163849880323!GO:0003779;actin binding;0.000109736505142236!GO:0030027;lamellipodium;0.000119085418401632!GO:0009117;nucleotide metabolic process;0.000119085418401632!GO:0051128;regulation of cellular component organization and biogenesis;0.0001366626255042!GO:0005798;Golgi-associated vesicle;0.00015285014815038!GO:0030425;dendrite;0.000155312154560515!GO:0048523;negative regulation of cellular process;0.000155312154560515!GO:0000323;lytic vacuole;0.000160305702473536!GO:0005764;lysosome;0.000160305702473536!GO:0005793;ER-Golgi intermediate compartment;0.000210453528378103!GO:0015980;energy derivation by oxidation of organic compounds;0.000213510258882761!GO:0044453;nuclear membrane part;0.000258160922283077!GO:0043492;ATPase activity, coupled to movement of substances;0.000262925293085155!GO:0030532;small nuclear ribonucleoprotein complex;0.000262925293085155!GO:0006752;group transfer coenzyme metabolic process;0.000285879006337624!GO:0005096;GTPase activator activity;0.00029810214715519!GO:0006613;cotranslational protein targeting to membrane;0.000300923104019626!GO:0031072;heat shock protein binding;0.00032943514500007!GO:0005741;mitochondrial outer membrane;0.000335411577999699!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000337200430636086!GO:0046467;membrane lipid biosynthetic process;0.000350018789436363!GO:0045786;negative regulation of progression through cell cycle;0.000362599987562477!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000362599987562477!GO:0000159;protein phosphatase type 2A complex;0.000373213962344687!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000393744256971092!GO:0005839;proteasome core complex (sensu Eukaryota);0.00040016867547769!GO:0016791;phosphoric monoester hydrolase activity;0.000401567997887995!GO:0019867;outer membrane;0.000419553072154993!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000424334149013325!GO:0031968;organelle outer membrane;0.000468235817684068!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00048950808095148!GO:0048489;synaptic vesicle transport;0.00048950808095148!GO:0006888;ER to Golgi vesicle-mediated transport;0.000520086591532748!GO:0003712;transcription cofactor activity;0.000523683841062296!GO:0019208;phosphatase regulator activity;0.00052960107773032!GO:0004721;phosphoprotein phosphatase activity;0.000535198190973592!GO:0000151;ubiquitin ligase complex;0.000535568088388931!GO:0030133;transport vesicle;0.000551543734401158!GO:0016311;dephosphorylation;0.000581736194772781!GO:0016197;endosome transport;0.000635019651382607!GO:0031901;early endosome membrane;0.000700492071898646!GO:0042254;ribosome biogenesis and assembly;0.000701151526033489!GO:0005643;nuclear pore;0.000723975251274251!GO:0008601;protein phosphatase type 2A regulator activity;0.000841261146875988!GO:0030118;clathrin coat;0.000841724053491061!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000850053286961059!GO:0004812;aminoacyl-tRNA ligase activity;0.000850053286961059!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000850053286961059!GO:0005762;mitochondrial large ribosomal subunit;0.000893685988112459!GO:0000315;organellar large ribosomal subunit;0.000893685988112459!GO:0007265;Ras protein signal transduction;0.000904889617046338!GO:0003729;mRNA binding;0.000907746625819114!GO:0007019;microtubule depolymerization;0.000925851483129831!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000956460656800532!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000956460656800532!GO:0043566;structure-specific DNA binding;0.00102651722195424!GO:0005875;microtubule associated complex;0.00105590928674549!GO:0022406;membrane docking;0.00123602567895403!GO:0048278;vesicle docking;0.00123602567895403!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00135714891056803!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00135714891056803!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00135714891056803!GO:0003724;RNA helicase activity;0.00140016189570433!GO:0006403;RNA localization;0.00140016189570433!GO:0048519;negative regulation of biological process;0.00141764305519848!GO:0003697;single-stranded DNA binding;0.00142508995626047!GO:0050657;nucleic acid transport;0.0014389366316055!GO:0051236;establishment of RNA localization;0.0014389366316055!GO:0050658;RNA transport;0.0014389366316055!GO:0009108;coenzyme biosynthetic process;0.00147286906747662!GO:0019888;protein phosphatase regulator activity;0.00149727686195837!GO:0043038;amino acid activation;0.00150038571358946!GO:0006418;tRNA aminoacylation for protein translation;0.00150038571358946!GO:0043039;tRNA aminoacylation;0.00150038571358946!GO:0006470;protein amino acid dephosphorylation;0.0016426967948621!GO:0043623;cellular protein complex assembly;0.00171839776930981!GO:0048487;beta-tubulin binding;0.00179561355066745!GO:0004298;threonine endopeptidase activity;0.00180611113440271!GO:0006904;vesicle docking during exocytosis;0.0018640914741228!GO:0019226;transmission of nerve impulse;0.00187189836700681!GO:0000314;organellar small ribosomal subunit;0.00196268949908342!GO:0005763;mitochondrial small ribosomal subunit;0.00196268949908342!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00210312742037587!GO:0043209;myelin sheath;0.00220640703785644!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00220640703785644!GO:0009165;nucleotide biosynthetic process;0.00225243500571696!GO:0006650;glycerophospholipid metabolic process;0.00237390606869651!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00245134043238209!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00245134043238209!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00245134043238209!GO:0008026;ATP-dependent helicase activity;0.00246234109289252!GO:0050767;regulation of neurogenesis;0.00246234109289252!GO:0000902;cell morphogenesis;0.00249584441061479!GO:0032989;cellular structure morphogenesis;0.00249584441061479!GO:0006323;DNA packaging;0.00251655132432134!GO:0006091;generation of precursor metabolites and energy;0.00255009992160994!GO:0008021;synaptic vesicle;0.00258400159476117!GO:0031902;late endosome membrane;0.00260006541729907!GO:0016050;vesicle organization and biogenesis;0.00262295341947363!GO:0006643;membrane lipid metabolic process;0.00263960484835659!GO:0030426;growth cone;0.0026664017279724!GO:0016126;sterol biosynthetic process;0.00278591506661178!GO:0065002;intracellular protein transport across a membrane;0.00291995364133996!GO:0005938;cell cortex;0.0029312445812798!GO:0019902;phosphatase binding;0.00296056672318454!GO:0008610;lipid biosynthetic process;0.00299413126410692!GO:0016564;transcription repressor activity;0.00299413126410692!GO:0031114;regulation of microtubule depolymerization;0.00299852757098003!GO:0007026;negative regulation of microtubule depolymerization;0.00299852757098003!GO:0004722;protein serine/threonine phosphatase activity;0.00300385521844603!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00315066269606011!GO:0005774;vacuolar membrane;0.00328038195124118!GO:0008154;actin polymerization and/or depolymerization;0.00333884581983848!GO:0051920;peroxiredoxin activity;0.00333884581983848!GO:0001505;regulation of neurotransmitter levels;0.00348658165888282!GO:0030427;site of polarized growth;0.00361937410467891!GO:0043021;ribonucleoprotein binding;0.00364182063642716!GO:0006414;translational elongation;0.00367733434563288!GO:0007017;microtubule-based process;0.00368871162396537!GO:0006612;protein targeting to membrane;0.00370159280854218!GO:0009966;regulation of signal transduction;0.00383096489223454!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00390102447340825!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00390102447340825!GO:0004667;prostaglandin-D synthase activity;0.00390102447340825!GO:0050802;circadian sleep/wake cycle, sleep;0.00390102447340825!GO:0022410;circadian sleep/wake cycle process;0.00390102447340825!GO:0042749;regulation of circadian sleep/wake cycle;0.00390102447340825!GO:0012506;vesicle membrane;0.00393891420030861!GO:0012501;programmed cell death;0.00398643820569769!GO:0005048;signal sequence binding;0.004123472347059!GO:0003714;transcription corepressor activity;0.00429453574283772!GO:0016568;chromatin modification;0.00433122867366168!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00447976121116949!GO:0042578;phosphoric ester hydrolase activity;0.00450626447153222!GO:0030867;rough endoplasmic reticulum membrane;0.00455770652787477!GO:0006915;apoptosis;0.00461511277464375!GO:0043681;protein import into mitochondrion;0.00463052190095874!GO:0051087;chaperone binding;0.00478397814879372!GO:0005869;dynactin complex;0.005236907934796!GO:0008219;cell death;0.00529366746826456!GO:0016265;death;0.00529366746826456!GO:0006259;DNA metabolic process;0.00536156051463739!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00553134602473928!GO:0006916;anti-apoptosis;0.00560500501118357!GO:0050811;GABA receptor binding;0.00569170913112607!GO:0051056;regulation of small GTPase mediated signal transduction;0.00600100626154157!GO:0001726;ruffle;0.00623655851383692!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00638101606527234!GO:0006606;protein import into nucleus;0.00649646534971659!GO:0051287;NAD binding;0.00671211901923568!GO:0007272;ensheathment of neurons;0.0067179048428264!GO:0008366;axon ensheathment;0.0067179048428264!GO:0051170;nuclear import;0.0067535342993783!GO:0051427;hormone receptor binding;0.00701942105821262!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0071216377014546!GO:0055083;monovalent inorganic anion homeostasis;0.0071216377014546!GO:0055064;chloride ion homeostasis;0.0071216377014546!GO:0030644;cellular chloride ion homeostasis;0.0071216377014546!GO:0007005;mitochondrion organization and biogenesis;0.00720746399898594!GO:0004386;helicase activity;0.00760514008311558!GO:0019843;rRNA binding;0.00775341972026849!GO:0003746;translation elongation factor activity;0.00786126706380642!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00786126706380642!GO:0005885;Arp2/3 protein complex;0.00792012283768799!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.00801660394232896!GO:0005516;calmodulin binding;0.00803502228010362!GO:0006665;sphingolipid metabolic process;0.00808355852259069!GO:0008180;signalosome;0.00809551096918321!GO:0050435;beta-amyloid metabolic process;0.00811519234943209!GO:0005085;guanyl-nucleotide exchange factor activity;0.00820760518587901!GO:0008186;RNA-dependent ATPase activity;0.00829357160227643!GO:0005791;rough endoplasmic reticulum;0.00839177570441977!GO:0043069;negative regulation of programmed cell death;0.00839177570441977!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00848564873866487!GO:0008250;oligosaccharyl transferase complex;0.0086168184525575!GO:0016491;oxidoreductase activity;0.00865230204217797!GO:0030132;clathrin coat of coated pit;0.00867574419503708!GO:0006891;intra-Golgi vesicle-mediated transport;0.00893061113910333!GO:0045055;regulated secretory pathway;0.00901115068545292!GO:0005765;lysosomal membrane;0.00908285824000623!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00908543558878748!GO:0046474;glycerophospholipid biosynthetic process;0.00976853389966603!GO:0043066;negative regulation of apoptosis;0.0101635072380789!GO:0051261;protein depolymerization;0.0102032909968627!GO:0044433;cytoplasmic vesicle part;0.0102324449570121!GO:0016859;cis-trans isomerase activity;0.0104396830524593!GO:0042802;identical protein binding;0.010868968865402!GO:0051028;mRNA transport;0.0109429445834489!GO:0007269;neurotransmitter secretion;0.0111786416125819!GO:0044437;vacuolar part;0.0112311370789871!GO:0030384;phosphoinositide metabolic process;0.0112470756079974!GO:0006892;post-Golgi vesicle-mediated transport;0.0115405029547609!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0116148799034176!GO:0007034;vacuolar transport;0.0116793939785815!GO:0005092;GDP-dissociation inhibitor activity;0.0119305199747148!GO:0006607;NLS-bearing substrate import into nucleus;0.0121530498026714!GO:0007006;mitochondrial membrane organization and biogenesis;0.0121977550655751!GO:0044448;cell cortex part;0.0122181904970683!GO:0035257;nuclear hormone receptor binding;0.0122181904970683!GO:0030041;actin filament polymerization;0.0123752993786218!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0123895823662023!GO:0000062;acyl-CoA binding;0.0124077542425655!GO:0051540;metal cluster binding;0.0124077542425655!GO:0051536;iron-sulfur cluster binding;0.0124077542425655!GO:0001578;microtubule bundle formation;0.0132345556880992!GO:0006364;rRNA processing;0.0132345556880992!GO:0031109;microtubule polymerization or depolymerization;0.0133193690355368!GO:0001508;regulation of action potential;0.0133412448763881!GO:0030660;Golgi-associated vesicle membrane;0.0134247859365353!GO:0016272;prefoldin complex;0.0140479850216586!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0142849335555433!GO:0030742;GTP-dependent protein binding;0.014370587119426!GO:0048500;signal recognition particle;0.0144996692610896!GO:0005868;cytoplasmic dynein complex;0.0146027033491938!GO:0008139;nuclear localization sequence binding;0.0156380991513805!GO:0048167;regulation of synaptic plasticity;0.0162478172759551!GO:0006818;hydrogen transport;0.0167733245991545!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0167803419073442!GO:0050749;apolipoprotein E receptor binding;0.0169470277669912!GO:0035035;histone acetyltransferase binding;0.0169470277669912!GO:0004576;oligosaccharyl transferase activity;0.0170190876897309!GO:0019887;protein kinase regulator activity;0.0174703707207584!GO:0030658;transport vesicle membrane;0.0179035862948604!GO:0006672;ceramide metabolic process;0.0181441935431458!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0181530155520251!GO:0015002;heme-copper terminal oxidase activity;0.0181530155520251!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0181530155520251!GO:0004129;cytochrome-c oxidase activity;0.0181530155520251!GO:0030125;clathrin vesicle coat;0.0181530155520251!GO:0030665;clathrin coated vesicle membrane;0.0181530155520251!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0184557217366246!GO:0046930;pore complex;0.0187472959301563!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0193316493864408!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0196220421077995!GO:0004004;ATP-dependent RNA helicase activity;0.019727331517753!GO:0019903;protein phosphatase binding;0.019727331517753!GO:0043284;biopolymer biosynthetic process;0.0201481434827952!GO:0006402;mRNA catabolic process;0.0201481434827952!GO:0009066;aspartate family amino acid metabolic process;0.0201792619517374!GO:0004113;2',3'-cyclic-nucleotide 3'-phosphodiesterase activity;0.0205619493379653!GO:0009214;cyclic nucleotide catabolic process;0.0205619493379653!GO:0006644;phospholipid metabolic process;0.0207862063072483!GO:0016072;rRNA metabolic process;0.0211148874192047!GO:0006333;chromatin assembly or disassembly;0.0223456918640464!GO:0016363;nuclear matrix;0.0223691526628161!GO:0006595;polyamine metabolic process;0.0223886634216797!GO:0000096;sulfur amino acid metabolic process;0.0225810474606698!GO:0051726;regulation of cell cycle;0.022675769600371!GO:0046519;sphingoid metabolic process;0.022675769600371!GO:0005813;centrosome;0.0235208213383093!GO:0015992;proton transport;0.0238572923466712!GO:0050839;cell adhesion molecule binding;0.0238572923466712!GO:0030659;cytoplasmic vesicle membrane;0.0238572923466712!GO:0007049;cell cycle;0.0239320231848239!GO:0001540;beta-amyloid binding;0.0239952066814795!GO:0007268;synaptic transmission;0.0246834042201104!GO:0006399;tRNA metabolic process;0.0250839180358889!GO:0051539;4 iron, 4 sulfur cluster binding;0.0254625499754435!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0262604463980675!GO:0030137;COPI-coated vesicle;0.0267570009231917!GO:0050803;regulation of synapse structure and activity;0.0271646811252696!GO:0031124;mRNA 3'-end processing;0.0273064906510847!GO:0000074;regulation of progression through cell cycle;0.0274038165228369!GO:0007033;vacuole organization and biogenesis;0.0277639413784454!GO:0044262;cellular carbohydrate metabolic process;0.0285656158707021!GO:0030424;axon;0.0285672442027365!GO:0006695;cholesterol biosynthetic process;0.0285672442027365!GO:0030258;lipid modification;0.0289825127010597!GO:0019911;structural constituent of myelin sheath;0.0293385560823279!GO:0042026;protein refolding;0.0299092975164309!GO:0015682;ferric iron transport;0.0309936179834482!GO:0015091;ferric iron transmembrane transporter activity;0.0309936179834482!GO:0031643;positive regulation of myelination;0.0309936179834482!GO:0046489;phosphoinositide biosynthetic process;0.0310726880783529!GO:0043488;regulation of mRNA stability;0.0311987083735567!GO:0043487;regulation of RNA stability;0.0311987083735567!GO:0008088;axon cargo transport;0.0313281048901696!GO:0019752;carboxylic acid metabolic process;0.0314197645260178!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0317181064780288!GO:0045047;protein targeting to ER;0.0317181064780288!GO:0045454;cell redox homeostasis;0.0321413964596878!GO:0019904;protein domain specific binding;0.0327041137812321!GO:0000287;magnesium ion binding;0.0330310489300153!GO:0003711;transcription elongation regulator activity;0.0331298005305603!GO:0033673;negative regulation of kinase activity;0.0334597959622236!GO:0006469;negative regulation of protein kinase activity;0.0334597959622236!GO:0006082;organic acid metabolic process;0.0334597959622236!GO:0042995;cell projection;0.0336109868779743!GO:0019894;kinesin binding;0.0340740969082968!GO:0051168;nuclear export;0.0344336920941182!GO:0044255;cellular lipid metabolic process;0.0344336920941182!GO:0007041;lysosomal transport;0.0361388745795274!GO:0008312;7S RNA binding;0.03679780051907!GO:0048468;cell development;0.0369826248846685!GO:0030880;RNA polymerase complex;0.0372369851615889!GO:0033130;acetylcholine receptor binding;0.0372746367836889!GO:0042982;amyloid precursor protein metabolic process;0.0377439244643872!GO:0016579;protein deubiquitination;0.0377774142678793!GO:0030911;TPR domain binding;0.0379740402091408!GO:0031110;regulation of microtubule polymerization or depolymerization;0.0381260340133567!GO:0016787;hydrolase activity;0.0384421108159757!GO:0008361;regulation of cell size;0.0385193281756868!GO:0005815;microtubule organizing center;0.0390425109478031!GO:0031371;ubiquitin conjugating enzyme complex;0.0395007389457425!GO:0016408;C-acyltransferase activity;0.0398940913558024!GO:0007266;Rho protein signal transduction;0.0409797282553526!GO:0003690;double-stranded DNA binding;0.0411591211100286!GO:0030119;AP-type membrane coat adaptor complex;0.0421937793706506!GO:0032011;ARF protein signal transduction;0.0422851349376778!GO:0032012;regulation of ARF protein signal transduction;0.0422851349376778!GO:0051252;regulation of RNA metabolic process;0.0426623477904512!GO:0004674;protein serine/threonine kinase activity;0.0427110994792363!GO:0042552;myelination;0.0427938088468006!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.043645661512007!GO:0033043;regulation of organelle organization and biogenesis;0.043645661512007!GO:0006383;transcription from RNA polymerase III promoter;0.0437388340350902!GO:0043025;cell soma;0.0443758307947634!GO:0051789;response to protein stimulus;0.0445017624225055!GO:0006986;response to unfolded protein;0.0445017624225055!GO:0050178;phenylpyruvate tautomerase activity;0.0447233069446317!GO:0000059;protein import into nucleus, docking;0.0451480451379211!GO:0001887;selenium metabolic process;0.0456876031573156!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0457367291411503!GO:0030175;filopodium;0.0457685854370301!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0463738537627553!GO:0010257;NADH dehydrogenase complex assembly;0.0463738537627553!GO:0033108;mitochondrial respiratory chain complex assembly;0.0463738537627553!GO:0019783;small conjugating protein-specific protease activity;0.0466970739800522!GO:0030139;endocytic vesicle;0.046771122500561!GO:0030176;integral to endoplasmic reticulum membrane;0.0472065833449239!GO:0005100;Rho GTPase activator activity;0.0475659363500829!GO:0006376;mRNA splice site selection;0.0477257137917397!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0477257137917397!GO:0007050;cell cycle arrest;0.0481798344862114!GO:0030131;clathrin adaptor complex;0.0491436068478095!GO:0030663;COPI coated vesicle membrane;0.0496683673405961!GO:0030126;COPI vesicle coat;0.0496683673405961 | |||
|sample_id=10193 | |sample_id=10193 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=diencephalon | |sample_tissue=diencephalon | ||
|top_motifs=REST:3.61968619945;NHLH1,2:3.39339883031;MYFfamily:3.33596663605;SOX5:3.22053027218;SOX2:3.12523877894;NFIX:3.07701292766;ZBTB6:3.00256723624;HOXA9_MEIS1:2.8774093883;ZFP161:2.85692641485;MED-1{core}:2.82097197975;EGR1..3:2.70521011709;RFX1:2.70242889713;OCT4_SOX2{dimer}:2.6537910759;MTE{core}:2.64990428186;SOX17:2.5993076427;POU6F1:2.54535526867;SOX{8,9,10}:2.54151826158;XBP1:2.49321473624;NKX3-2:2.48353832334;CUX2:2.46816866313;PAX5:2.46186564024;ARID5B:2.45097540542;MAFB:2.45045418655;MTF1:2.44525063843;ATF2:2.40618020671;GATA4:2.39642376241;CDC5L:2.38992296717;PRRX1,2:2.35041116032;KLF4:2.34548389344;HIC1:2.30344581896;RBPJ:2.24279327695;FOXM1:2.24229410435;RFX2..5_RFXANK_RFXAP:2.23704645447;DBP:2.2254154802;GTF2I:2.14139398355;PRDM1:2.13857916914;SMAD1..7,9:2.08711507006;LMO2:2.06185224989;TFAP2B:2.04198090172;MZF1:1.92863316963;JUN:1.92538722934;HOX{A4,D4}:1.85624283026;ONECUT1,2:1.84927677751;PATZ1:1.83505551546;FOXP3:1.76637733466;RREB1:1.73018039033;POU5F1:1.70310159009;PAX6:1.66749461624;HBP1_HMGB_SSRP1_UBTF:1.66273456493;MAZ:1.64192656637;LEF1_TCF7_TCF7L1,2:1.62594899743;TGIF1:1.56623120841;BREu{core}:1.54873304053;AHR_ARNT_ARNT2:1.53988855155;NKX6-1,2:1.53983316394;ESRRA:1.50327813413;EP300:1.47263566579;PDX1:1.39066193016;GCM1,2:1.38493741981;GFI1B:1.38407645478;NRF1:1.37430346082;NKX2-3_NKX2-5:1.31431890493;NANOG:1.30935366901;EBF1:1.26364119935;HAND1,2:1.24310028111;CRX:1.21259684569;TFAP2{A,C}:1.20286191121;FOX{F1,F2,J1}:1.16728975795;VSX1,2:1.15840707042;SPZ1:1.15546285165;ZNF423:1.10707457592;NFIL3:1.08712858328;TFDP1:1.04467427327;FOXD3:1.03155658005;AR:0.990748650888;ALX1:0.965199884444;MYOD1:0.954144966218;ZNF384:0.951149373181;SREBF1,2:0.946513514069;NR3C1:0.92581546683;MYBL2:0.914260488056;T:0.877839548236;FOXQ1:0.873579052326;RORA:0.845510089832;ZNF143:0.840680454595;TLX2:0.819481167304;CREB1:0.803998624917;GTF2A1,2:0.798660225555;SP1:0.783130257791;ADNP_IRX_SIX_ZHX:0.763966896919;GFI1:0.747926839806;PBX1:0.742470166033;LHX3,4:0.68372887172;YY1:0.637811968018;ZIC1..3:0.607340224481;ZEB1:0.546554212097;TLX1..3_NFIC{dimer}:0.532578851608;GZF1:0.519002953302;HMGA1,2:0.497757467299;STAT1,3:0.49671352607;FOXO1,3,4:0.468799572089;PAX1,9:0.458617457547;IKZF2:0.419578835667;NR1H4:0.405484049465;TFAP4:0.355839747564;NR5A1,2:0.34790278701;HOX{A6,A7,B6,B7}:0.347662912254;UFEwm:0.335408296917;NFE2L1:0.325929581908;POU3F1..4:0.316151260939;ZNF238:0.312173776189;FOX{D1,D2}:0.308699626579;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.303201925676;FOX{I1,J2}:0.283953340766;FOXN1:0.263206650675;HMX1:0.243160645665;bHLH_family:0.209272047164;MEF2{A,B,C,D}:0.20867236279;BPTF:0.164699735748;ATF5_CREB3:0.158301434839;TBX4,5:0.144641671923;FOXP1:0.112496745969;IRF7:0.0604957862224;NKX2-2,8:0.0555329336198;NFY{A,B,C}:0.0347730584995;NFE2L2:0.0114133683569;STAT2,4,6:0.0109019909019;ATF4:-0.0233032884231;PAX8:-0.0236734227029;PAX2:-0.0704624992441;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0711653095979;FOXL1:-0.0715260839578;XCPE1{core}:-0.115207495717;ZBTB16:-0.148810197715;HSF1,2:-0.154638380717;IRF1,2:-0.155282694204;IKZF1:-0.179652750775;TEF:-0.191296004349;PAX4:-0.194517867064;SNAI1..3:-0.219603855341;TFCP2:-0.241008947996;SPI1:-0.322227291816;CDX1,2,4:-0.372355835849;DMAP1_NCOR{1,2}_SMARC:-0.373192817336;RXR{A,B,G}:-0.407856957389;POU1F1:-0.441738699347;HES1:-0.452740258902;HNF4A_NR2F1,2:-0.460474405397;NANOG{mouse}:-0.466034031851;ESR1:-0.47998584215;NFATC1..3:-0.560855121585;TP53:-0.638994963569;HNF1A:-0.646096304819;CEBPA,B_DDIT3:-0.712902137328;SPIB:-0.739827023501;GATA6:-0.76648447964;ATF6:-0.781603709286;NFE2:-0.785368924357;ETS1,2:-0.803899002654;ALX4:-0.808939504469;ZNF148:-0.824023815465;ELK1,4_GABP{A,B1}:-0.824305671186;PAX3,7:-0.895336995441;EVI1:-0.932440379472;FOSL2:-0.933466037281;TOPORS:-0.965437714696;RUNX1..3:-1.00284714357;FOXA2:-1.01038833621;TBP:-1.0211570609;NKX3-1:-1.0247750736;MYB:-1.04496968093;HIF1A:-1.04598813754;GLI1..3:-1.07802761846;BACH2:-1.08038989883;FOS_FOS{B,L1}_JUN{B,D}:-1.10013256781;TEAD1:-1.10980983435;NFKB1_REL_RELA:-1.12329884953;NKX2-1,4:-1.16945967458;E2F1..5:-1.29411732095;HLF:-1.30920419997;NR6A1:-1.30930004123;SRF:-1.41635047819;RXRA_VDR{dimer}:-1.41920811867;AIRE:-1.49141137581;POU2F1..3:-1.4948686024;TAL1_TCF{3,4,12}:-1.53875622664;ELF1,2,4:-1.58699070284;STAT5{A,B}:-1.71450412269;EN1,2:-1.8360263223;PITX1..3:-2.07613398988;HOX{A5,B5}:-2.67656285574;PPARG:-2.96779512673 | |top_motifs=REST:3.61968619945;NHLH1,2:3.39339883031;MYFfamily:3.33596663605;SOX5:3.22053027218;SOX2:3.12523877894;NFIX:3.07701292766;ZBTB6:3.00256723624;HOXA9_MEIS1:2.8774093883;ZFP161:2.85692641485;MED-1{core}:2.82097197975;EGR1..3:2.70521011709;RFX1:2.70242889713;OCT4_SOX2{dimer}:2.6537910759;MTE{core}:2.64990428186;SOX17:2.5993076427;POU6F1:2.54535526867;SOX{8,9,10}:2.54151826158;XBP1:2.49321473624;NKX3-2:2.48353832334;CUX2:2.46816866313;PAX5:2.46186564024;ARID5B:2.45097540542;MAFB:2.45045418655;MTF1:2.44525063843;ATF2:2.40618020671;GATA4:2.39642376241;CDC5L:2.38992296717;PRRX1,2:2.35041116032;KLF4:2.34548389344;HIC1:2.30344581896;RBPJ:2.24279327695;FOXM1:2.24229410435;RFX2..5_RFXANK_RFXAP:2.23704645447;DBP:2.2254154802;GTF2I:2.14139398355;PRDM1:2.13857916914;SMAD1..7,9:2.08711507006;LMO2:2.06185224989;TFAP2B:2.04198090172;MZF1:1.92863316963;JUN:1.92538722934;HOX{A4,D4}:1.85624283026;ONECUT1,2:1.84927677751;PATZ1:1.83505551546;FOXP3:1.76637733466;RREB1:1.73018039033;POU5F1:1.70310159009;PAX6:1.66749461624;HBP1_HMGB_SSRP1_UBTF:1.66273456493;MAZ:1.64192656637;LEF1_TCF7_TCF7L1,2:1.62594899743;TGIF1:1.56623120841;BREu{core}:1.54873304053;AHR_ARNT_ARNT2:1.53988855155;NKX6-1,2:1.53983316394;ESRRA:1.50327813413;EP300:1.47263566579;PDX1:1.39066193016;GCM1,2:1.38493741981;GFI1B:1.38407645478;NRF1:1.37430346082;NKX2-3_NKX2-5:1.31431890493;NANOG:1.30935366901;EBF1:1.26364119935;HAND1,2:1.24310028111;CRX:1.21259684569;TFAP2{A,C}:1.20286191121;FOX{F1,F2,J1}:1.16728975795;VSX1,2:1.15840707042;SPZ1:1.15546285165;ZNF423:1.10707457592;NFIL3:1.08712858328;TFDP1:1.04467427327;FOXD3:1.03155658005;AR:0.990748650888;ALX1:0.965199884444;MYOD1:0.954144966218;ZNF384:0.951149373181;SREBF1,2:0.946513514069;NR3C1:0.92581546683;MYBL2:0.914260488056;T:0.877839548236;FOXQ1:0.873579052326;RORA:0.845510089832;ZNF143:0.840680454595;TLX2:0.819481167304;CREB1:0.803998624917;GTF2A1,2:0.798660225555;SP1:0.783130257791;ADNP_IRX_SIX_ZHX:0.763966896919;GFI1:0.747926839806;PBX1:0.742470166033;LHX3,4:0.68372887172;YY1:0.637811968018;ZIC1..3:0.607340224481;ZEB1:0.546554212097;TLX1..3_NFIC{dimer}:0.532578851608;GZF1:0.519002953302;HMGA1,2:0.497757467299;STAT1,3:0.49671352607;FOXO1,3,4:0.468799572089;PAX1,9:0.458617457547;IKZF2:0.419578835667;NR1H4:0.405484049465;TFAP4:0.355839747564;NR5A1,2:0.34790278701;HOX{A6,A7,B6,B7}:0.347662912254;UFEwm:0.335408296917;NFE2L1:0.325929581908;POU3F1..4:0.316151260939;ZNF238:0.312173776189;FOX{D1,D2}:0.308699626579;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.303201925676;FOX{I1,J2}:0.283953340766;FOXN1:0.263206650675;HMX1:0.243160645665;bHLH_family:0.209272047164;MEF2{A,B,C,D}:0.20867236279;BPTF:0.164699735748;ATF5_CREB3:0.158301434839;TBX4,5:0.144641671923;FOXP1:0.112496745969;IRF7:0.0604957862224;NKX2-2,8:0.0555329336198;NFY{A,B,C}:0.0347730584995;NFE2L2:0.0114133683569;STAT2,4,6:0.0109019909019;ATF4:-0.0233032884231;PAX8:-0.0236734227029;PAX2:-0.0704624992441;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0711653095979;FOXL1:-0.0715260839578;XCPE1{core}:-0.115207495717;ZBTB16:-0.148810197715;HSF1,2:-0.154638380717;IRF1,2:-0.155282694204;IKZF1:-0.179652750775;TEF:-0.191296004349;PAX4:-0.194517867064;SNAI1..3:-0.219603855341;TFCP2:-0.241008947996;SPI1:-0.322227291816;CDX1,2,4:-0.372355835849;DMAP1_NCOR{1,2}_SMARC:-0.373192817336;RXR{A,B,G}:-0.407856957389;POU1F1:-0.441738699347;HES1:-0.452740258902;HNF4A_NR2F1,2:-0.460474405397;NANOG{mouse}:-0.466034031851;ESR1:-0.47998584215;NFATC1..3:-0.560855121585;TP53:-0.638994963569;HNF1A:-0.646096304819;CEBPA,B_DDIT3:-0.712902137328;SPIB:-0.739827023501;GATA6:-0.76648447964;ATF6:-0.781603709286;NFE2:-0.785368924357;ETS1,2:-0.803899002654;ALX4:-0.808939504469;ZNF148:-0.824023815465;ELK1,4_GABP{A,B1}:-0.824305671186;PAX3,7:-0.895336995441;EVI1:-0.932440379472;FOSL2:-0.933466037281;TOPORS:-0.965437714696;RUNX1..3:-1.00284714357;FOXA2:-1.01038833621;TBP:-1.0211570609;NKX3-1:-1.0247750736;MYB:-1.04496968093;HIF1A:-1.04598813754;GLI1..3:-1.07802761846;BACH2:-1.08038989883;FOS_FOS{B,L1}_JUN{B,D}:-1.10013256781;TEAD1:-1.10980983435;NFKB1_REL_RELA:-1.12329884953;NKX2-1,4:-1.16945967458;E2F1..5:-1.29411732095;HLF:-1.30920419997;NR6A1:-1.30930004123;SRF:-1.41635047819;RXRA_VDR{dimer}:-1.41920811867;AIRE:-1.49141137581;POU2F1..3:-1.4948686024;TAL1_TCF{3,4,12}:-1.53875622664;ELF1,2,4:-1.58699070284;STAT5{A,B}:-1.71450412269;EN1,2:-1.8360263223;PITX1..3:-2.07613398988;HOX{A5,B5}:-2.67656285574;PPARG:-2.96779512673 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10193-103E4;search_select_hide=table117:FF:10193-103E4 | |||
}} | }} | ||
Latest revision as of 12:26, 3 June 2020
| Name: | diencephalon, adult |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12610 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12610
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12610
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0541 |
| 10 | 10 | 0.0246 |
| 100 | 100 | 0.252 |
| 101 | 101 | 0.857 |
| 102 | 102 | 0.814 |
| 103 | 103 | 0.309 |
| 104 | 104 | 0.0693 |
| 105 | 105 | 0.0848 |
| 106 | 106 | 0.0468 |
| 107 | 107 | 0.14 |
| 108 | 108 | 0.789 |
| 109 | 109 | 0.00992 |
| 11 | 11 | 0.00989 |
| 110 | 110 | 0.0417 |
| 111 | 111 | 0.145 |
| 112 | 112 | 0.566 |
| 113 | 113 | 0.739 |
| 114 | 114 | 0.158 |
| 115 | 115 | 0.67 |
| 116 | 116 | 0.229 |
| 117 | 117 | 0.00596 |
| 118 | 118 | 0.198 |
| 119 | 119 | 0.162 |
| 12 | 12 | 0.627 |
| 120 | 120 | 0.173 |
| 121 | 121 | 0.461 |
| 122 | 122 | 0.426 |
| 123 | 123 | 0.198 |
| 124 | 124 | 0.0716 |
| 125 | 125 | 0.737 |
| 126 | 126 | 0.0761 |
| 127 | 127 | 0.453 |
| 128 | 128 | 0.303 |
| 129 | 129 | 0.875 |
| 13 | 13 | 7.39237e-4 |
| 130 | 130 | 0.606 |
| 131 | 131 | 0.0294 |
| 132 | 132 | 0.806 |
| 133 | 133 | 0.0033 |
| 134 | 134 | 0.527 |
| 135 | 135 | 0.175 |
| 136 | 136 | 0.0121 |
| 137 | 137 | 0.75 |
| 138 | 138 | 0.911 |
| 139 | 139 | 0.165 |
| 14 | 14 | 0.794 |
| 140 | 140 | 0.256 |
| 141 | 141 | 0.431 |
| 142 | 142 | 0.954 |
| 143 | 143 | 0.0127 |
| 144 | 144 | 0.876 |
| 145 | 145 | 0.133 |
| 146 | 146 | 0.457 |
| 147 | 147 | 0.725 |
| 148 | 148 | 0.595 |
| 149 | 149 | 0.493 |
| 15 | 15 | 0.0736 |
| 150 | 150 | 0.135 |
| 151 | 151 | 0.71 |
| 152 | 152 | 0.11 |
| 153 | 153 | 0.509 |
| 154 | 154 | 0.606 |
| 155 | 155 | 0.31 |
| 156 | 156 | 0.366 |
| 157 | 157 | 0.384 |
| 158 | 158 | 0.449 |
| 159 | 159 | 0.343 |
| 16 | 16 | 0.0798 |
| 160 | 160 | 0.269 |
| 161 | 161 | 0.268 |
| 162 | 162 | 0.947 |
| 163 | 163 | 0.933 |
| 164 | 164 | 0.00597 |
| 165 | 165 | 0.104 |
| 166 | 166 | 0.658 |
| 167 | 167 | 0.435 |
| 168 | 168 | 0.67 |
| 169 | 169 | 0.012 |
| 17 | 17 | 0.137 |
| 18 | 18 | 0.303 |
| 19 | 19 | 0.274 |
| 2 | 2 | 0.95 |
| 20 | 20 | 0.0423 |
| 21 | 21 | 0.0348 |
| 22 | 22 | 0.285 |
| 23 | 23 | 0.46 |
| 24 | 24 | 0.132 |
| 25 | 25 | 0.564 |
| 26 | 26 | 2.09811e-4 |
| 27 | 27 | 0.958 |
| 28 | 28 | 0.786 |
| 29 | 29 | 0.0103 |
| 3 | 3 | 0.018 |
| 30 | 30 | 0.557 |
| 31 | 31 | 0.896 |
| 32 | 32 | 0.0274 |
| 33 | 33 | 0.0617 |
| 34 | 34 | 0.74 |
| 35 | 35 | 0.614 |
| 36 | 36 | 0.107 |
| 37 | 37 | 0.0351 |
| 38 | 38 | 0.361 |
| 39 | 39 | 0.36 |
| 4 | 4 | 0.882 |
| 40 | 40 | 0.0441 |
| 41 | 41 | 0.546 |
| 42 | 42 | 0.13 |
| 43 | 43 | 0.108 |
| 44 | 44 | 0.486 |
| 45 | 45 | 0.816 |
| 46 | 46 | 0.0457 |
| 47 | 47 | 0.0889 |
| 48 | 48 | 0.0563 |
| 49 | 49 | 0.122 |
| 5 | 5 | 0.648 |
| 50 | 50 | 0.247 |
| 51 | 51 | 0.561 |
| 52 | 52 | 0.758 |
| 53 | 53 | 0.842 |
| 54 | 54 | 0.482 |
| 55 | 55 | 0.599 |
| 56 | 56 | 0.512 |
| 57 | 57 | 0.208 |
| 58 | 58 | 0.321 |
| 59 | 59 | 0.188 |
| 6 | 6 | 0.885 |
| 60 | 60 | 0.0862 |
| 61 | 61 | 0.0705 |
| 62 | 62 | 0.212 |
| 63 | 63 | 0.183 |
| 64 | 64 | 0.181 |
| 65 | 65 | 0.294 |
| 66 | 66 | 0.15 |
| 67 | 67 | 0.313 |
| 68 | 68 | 0.318 |
| 69 | 69 | 0.4 |
| 7 | 7 | 0.0804 |
| 70 | 70 | 0.0283 |
| 71 | 71 | 0.00658 |
| 72 | 72 | 0.427 |
| 73 | 73 | 0.0345 |
| 74 | 74 | 0.793 |
| 75 | 75 | 0.0169 |
| 76 | 76 | 0.218 |
| 77 | 77 | 0.242 |
| 78 | 78 | 0.00107 |
| 79 | 79 | 0.19 |
| 8 | 8 | 0.0806 |
| 80 | 80 | 0.715 |
| 81 | 81 | 0.633 |
| 82 | 82 | 0.587 |
| 83 | 83 | 0.281 |
| 84 | 84 | 0.542 |
| 85 | 85 | 0.338 |
| 86 | 86 | 0.216 |
| 87 | 87 | 0.0187 |
| 88 | 88 | 0.843 |
| 89 | 89 | 0.676 |
| 9 | 9 | 0.533 |
| 90 | 90 | 0.0737 |
| 91 | 91 | 0.299 |
| 92 | 92 | 0.375 |
| 93 | 93 | 0.787 |
| 94 | 94 | 0.0676 |
| 95 | 95 | 0.0302 |
| 96 | 96 | 0.824 |
| 97 | 97 | 0.642 |
| 98 | 98 | 0.123 |
| 99 | 99 | 0.81 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12610
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001894 (diencephalon)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001890 (forebrain)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010193 (human diencephalon - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006222 (future diencephalon)
UBERON:0010316 (germ layer / neural crest)
