FF:11289-117A2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005800 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005800 | ||
|accession_numbers=CAGE;DRX008501;DRR009373;DRZ000798;DRZ002183;DRZ012148;DRZ013533 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037048;DRR041414;DRZ007056 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0004573,UBERON:0003834,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0003513,UBERON:0010317,UBERON:0007798,UBERON:0001533,UBERON:0004535,UBERON:0004571,UBERON:0000915,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002595 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000175 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr9:132427883..132427951,+!p2@PRRX2!1.78!59.00!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.75!70.57!PRRX2;;chr8:55370487..55370503,+!p1@SOX17!1.69!47.97!SOX17;;chr7:27153454..27153469,-!p2@HOXA3!1.65!43.56!HOXA3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.58!36.94!ZBED1;;chr7:27170359..27170381,-!p1@HOXA4!1.50!30.88!HOXA4;;chr18:19749541..19749557,+!p1@GATA6!1.46!84.91!GATA6;;chr11:46299199..46299233,+!p1@CREB3L1!1.44!131.22!CREB3L1;;chr11:46299539..46299620,+!p2@CREB3L1!1.44!44.66!CREB3L1;;chr18:53068911..53068935,-!p4@TCF4!1.42!28.67!TCF4;;chr2:239756671..239756732,+!p1@TWIST2!1.41!78.29!TWIST2;;chr11:65686802..65686818,+!p6@DRAP1!1.39!40.80!DRAP1;;chr4:174451370..174451387,-!p1@HAND2!1.39!23.71!HAND2;;chr19:13134772..13134822,+!p2@NFIX!1.38!33.63!NFIX;;chr1:170632285..170632309,+!p1@PRRX1!1.38!25.91!PRRX1;;chr22:19748231..19748317,+!p1@TBX1!1.38!23.16!TBX1;;chr19:47523058..47523114,+!p1@NPAS1!1.33!20.40!NPAS1;;chr16:86600426..86600441,+!p1@FOXC2!1.32!48.52!FOXC2;;chr16:86544113..86544145,+!p1@FOXF1!1.32!24.81!FOXF1;;chr20:6748325..6748352,+!p1@BMP2!1.31!28.12!BMP2;;chr18:19749386..19749404,+!p2@GATA6!1.31!27.57!GATA6;;chr7:27183291..27183324,-!p1@HOXA5!1.27!17.64!HOXA5;;chr6:10415276..10415341,-!p2@TFAP2A!1.26!20.95!TFAP2A;;chr1:170633348..170633399,+!p2@PRRX1!1.23!21.50!PRRX1;;chr3:25470156..25470227,+!p2@RARB!1.22!15.44!RARB;;chr7:27183263..27183284,-!p2@HOXA5!1.22!15.44!HOXA5;;chr6:10412600..10412637,-!p1@TFAP2A!1.21!25.36!TFAP2A;;chr7:27153428..27153440,-!p3@HOXA3!1.19!14.34!HOXA3;;chr4:174450089..174450153,-!p2@HAND2!1.19!14.34!HAND2;;chr15:57511609..57511651,+!p2@TCF12!1.18!23.71!TCF12;;chr1:170633262..170633285,+!p3@PRRX1!1.18!15.99!PRRX1;;chr6:34204921..34204939,+!p3@HMGA1!1.13!375.48!HMGA1;;chr12:124873357..124873401,-!p1@NCOR2!1.13!144.46!NCOR2;;chr2:239756739..239756755,+!p2@TWIST2!1.11!20.40!TWIST2;;chr7:27142290..27142310,-!p1@HOXA2!1.10!11.58!HOXA2;;chr2:121493425..121493474,+!p1@GLI2!1.09!24.81!GLI2;;chr11:65687362..65687436,+!p3@DRAP1!1.08!50.73!DRAP1;;chr3:25469815..25469866,+!p3@RARB!1.08!11.03!RARB;;chr7:27170274..27170308,-!p3@HOXA4!1.08!11.03!HOXA4;;chr8:106330656..106330684,+!p1@ZFPM2!1.07!28.67!ZFPM2;;chr5:72744445..72744466,-!p2@FOXD1!1.06!17.64!FOXD1;;chr12:53614115..53614154,-!p1@RARG!1.05!55.69!RARG;;chr17:1959369..1959388,+!p2@HIC1!1.05!27.57!HIC1;;chr2:121493492..121493537,+!p2@GLI2!1.02!15.99!GLI2;;chr8:106330696..106330719,+!p2@ZFPM2!1.00!11.58!ZFPM2;;chr4:81104985..81105005,+!p4@PRDM8!1.00!11.03!PRDM8;;chr4:81105027..81105039,+!p3@PRDM8!1.00!10.48!PRDM8;;chr14:62162258..62162269,+!p2@HIF1A!0.99!87.12!HIF1A;;chr11:65686732..65686756,+!p2@DRAP1!0.99!38.04!DRAP1;;chr15:96869114..96869160,+!p11@NR2F2!0.99!12.13!NR2F2;;chr2:172967621..172967637,-!p1@DLX2!0.98!23.71!DLX2;;chr2:85981073..85981091,+!p5@ATOH8!0.97!8.27!ATOH8;;chr11:46299443..46299459,+!p4@CREB3L1!0.97!8.27!CREB3L1;;chr6:10412576..10412599,-!p5@TFAP2A!0.97!8.27!TFAP2A;;chr7:27153590..27153608,-!p7@HOXA3!0.97!8.27!HOXA3;;chr7:27169801..27169844,-!p2@HOXA4!0.97!8.27!HOXA4;;chr1:8938709..8938720,-!p3@ENO1!0.94!385.96!ENO1;;chr15:67430351..67430366,+!p10@SMAD3!0.94!7.72!SMAD3;;chr15:67458491..67458505,+!p18@SMAD3!0.94!7.72!SMAD3;;chr5:72744594..72744609,-!p1@FOXD1!0.93!35.84!FOXD1;;chr5:321810..321877,+!p1@AHRR!0.92!24.26!AHRR;;chr19:13134457..13134462,+!p5@NFIX!0.92!13.23!NFIX;;chr3:128206762..128206781,-!p2@GATA2!0.91!46.87!GATA2;;chr12:124873852..124873881,-!p3@NCOR2!0.91!45.21!NCOR2;;chr7:27183191..27183214,-!p4@HOXA5!0.91!7.17!HOXA5;;chr17:46622070..46622109,-!p1@HOXB2!0.90!15.99!HOXB2;;chr20:30193083..30193098,+!p1@ID1!0.89!568.46!ID1;;chr14:62162285..62162296,+!p3@HIF1A!0.89!36.94!HIF1A;;chr10:131762504..131762555,-!p1@EBF3!0.88!6.62!EBF3;;chr16:86600870..86600921,+!p2@FOXC2!0.88!6.62!FOXC2;;chr2:85981107..85981120,+!p3@ATOH8!0.88!6.62!ATOH8;;chr7:27183325..27183338,-!p5@HOXA5!0.88!6.62!HOXA5;;chr1:23885981..23886002,-!p1@ID3!0.87!1190.95!ID3;;chr1:170632959..170632987,+!p4@PRRX1!0.87!7.17!PRRX1;;chr11:46299186..46299195,+!p3@CREB3L1!0.87!7.17!CREB3L1;;chr17:46622114..46622138,-!p4@HOXB2!0.86!9.92!HOXB2;;chr11:65667884..65667895,-!p2@FOSL1!0.85!24.81!FOSL1;;chr2:19558373..19558392,-!p1@OSR1!0.85!17.64!OSR1;;chr7:137686763..137686784,-!p5@CREB3L2!0.85!11.03!CREB3L2;;chr7:27170324..27170335,-!p7@HOXA4!0.85!6.07!HOXA4;;chr13:37494248..37494260,-!p3@SMAD9!0.85!6.07!SMAD9;;chr19:13135386..13135435,+!p4@NFIX!0.85!6.07!NFIX;;chr1:170632439..170632465,+!p11@PRRX1!0.85!6.07!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.85!6.07!PRRX1;;chr2:172967242..172967265,-!p2@DLX2!0.85!6.07!DLX2;;chr14:24837368..24837401,+!p1@NFATC4!0.83!14.34!NFATC4;;chr19:13136130..13136165,+!p6@NFIX!0.83!7.72!NFIX;;chr3:141105705..141105770,+!p4@ZBTB38!0.83!7.17!ZBTB38;;chr11:65687243..65687276,+!p8@DRAP1!0.82!7.72!DRAP1;;chr15:67418177..67418204,+!p9@SMAD3!0.81!5.51!SMAD3;;chr17:41622731..41622764,-!p5@ETV4!0.81!5.51!ETV4;;chr18:19749353..19749367,+!p4@GATA6!0.81!5.51!GATA6;;chr1:170632115..170632136,+!p9@PRRX1!0.81!5.51!PRRX1;;chr11:65667846..65667868,-!p1@FOSL1!0.80!152.73!FOSL1;;chr2:185463247..185463263,+!p1@ZNF804A!0.80!9.92!ZNF804A;;chr21:36260295..36260310,-!p3@RUNX1!0.80!8.82!RUNX1;;chr12:54447599..54447630,+!p3@HOXC4!0.80!6.62!HOXC4;;chr1:151032860..151032918,+!p1@MLLT11!0.79!66.72!MLLT11;;chr12:115121962..115121987,-!p1@TBX3!0.79!47.42!TBX3;;chr3:141121847..141121868,+!p5@ZBTB38!0.79!8.27!ZBTB38;;chr2:200322654..200322707,-!p2@SATB2!0.79!7.72!SATB2;;chr17:41623692..41623715,-!p1@ETV4!0.78!23.16!ETV4;;chr18:19749517..19749531,+!p3@GATA6!0.78!9.37!GATA6;;chr7:1577899..1577943,+!p3@MAFK!0.78!4.96!MAFK;;chr1:170633058..170633084,+!p5@PRRX1!0.78!4.96!PRRX1;;chr19:45251943..45252006,+!p1@BCL3!0.76!138.94!BCL3;;chr12:66218598..66218645,+!p2@HMGA2!0.76!24.26!HMGA2;;chr2:85981222..85981259,+!p2@ATOH8!0.76!8.27!ATOH8;;chr11:65687222..65687240,+!p7@DRAP1!0.75!6.07!DRAP1;;chr10:77161504..77161530,-!p1@ZNF503!0.74!66.16!ZNF503;;chr2:85980951..85981004,+!p1@ATOH8!0.74!7.72!ATOH8;;chr2:66662281..66662308,+!p1@MEIS1!0.73!16.54!MEIS1;;chr6:1610293..1610310,+!p1@FOXC1!0.73!7.72!FOXC1;;chr4:81118647..81118666,+!p1@PRDM8!0.73!6.07!PRDM8;;chr15:67418119..67418162,+!p5@SMAD3!0.73!4.96!SMAD3;;chr15:96869165..96869183,+!p20@NR2F2!0.73!4.41!NR2F2;;chr2:172949484..172949522,+!p1@DLX1!0.73!4.41!DLX1;;chr2:172950227..172950249,+!p2@DLX1!0.73!4.41!DLX1;;chr2:172967276..172967296,-!p3@DLX2!0.73!4.41!DLX2;;chr1:170632683..170632696,+!p12@PRRX1!0.73!4.41!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.73!4.41!PRRX1;;chr7:27170042..27170064,-!p4@HOXA4!0.73!4.41!HOXA4;;chr8:40755333..40755352,-!p1@ZMAT4!0.73!4.41!ZMAT4;;chr17:3571863..3571881,-!p1@TAX1BP3!0.72!341.30!TAX1BP3;;chr4:81104895..81104920,+!p2@PRDM8!0.72!6.62!PRDM8;;chr19:38720294..38720348,-!p1@DPF1!0.72!5.51!DPF1;;chr3:141087393..141087426,+!p3@ZBTB38!0.71!18.20!ZBTB38;;chr17:41622765..41622821,-!p2@ETV4!0.71!6.62!ETV4;;chr4:81104958..81104981,+!p5@PRDM8!0.71!4.96!PRDM8;;chr6:85474299..85474324,-!p1@TBX18!0.70!7.72!TBX18;;chr17:46621937..46621966,-!p2@HOXB2!0.69!11.58!HOXB2;;chr6:85473156..85473210,-!p2@TBX18!0.69!4.96!TBX18;;chr7:27153443..27153450,-!p8@HOXA3!0.69!3.86!HOXA3;;chr7:27153613..27153630,-!p6@HOXA3!0.69!3.86!HOXA3;;chr7:35293685..35293718,-!p1@TBX20!0.69!3.86!TBX20;;chr1:170632250..170632277,+!p7@PRRX1!0.69!3.86!PRRX1;;chr2:172967353..172967365,-!p5@DLX2!0.69!3.86!DLX2;;chr2:8819364..8819390,+!p2@ID2!0.69!3.86!ID2;;chr12:54447637..54447659,+!p4@HOXC4!0.69!3.86!HOXC4;;chr15:67418047..67418093,+!p4@SMAD3!0.68!4.96!SMAD3;;chr6:10412392..10412409,-!p4@TFAP2A!0.68!4.41!TFAP2A;;chr1:8938766..8938774,-!p2@ENO1!0.67!293.33!ENO1;;chr19:13106214..13106382,+!p1@NFIX!0.67!99.25!NFIX;;chr6:34204973..34204990,+!p4@HMGA1!0.67!56.79!HMGA1;;chr20:48599506..48599526,+!p1@SNAI1!0.67!27.02!SNAI1;;chr11:65686952..65686975,+!p5@DRAP1!0.67!23.16!DRAP1;;chr2:71127699..71127744,+!p1@VAX2!0.67!8.27!VAX2;;chr19:45250948..45250998,+!p3@BCL3!0.66!9.92!BCL3;;chr3:25469724..25469773,+!p1@RARB!0.66!5.51!RARB;;chr8:72756267..72756296,-!p4@MSC!0.66!5.51!MSC;;chr1:8938736..8938756,-!p1@ENO1!0.65!4439.59!ENO1;;chr19:47922750..47922795,-!p1@MEIS3!0.65!6.07!MEIS3;;chr7:137686552..137686564,-!p9@CREB3L2!0.65!5.51!CREB3L2;;chr16:88519669..88519726,+!p1@ZFPM1!0.64!35.29!ZFPM1;;chr2:85360499..85360598,+!p1@TCF7L1!0.63!21.50!TCF7L1;;chr8:77593474..77593612,+!p1@ZFHX4!0.63!15.99!ZFHX4;;chr12:66218255..66218304,+!p3@HMGA2!0.63!9.92!HMGA2;;chr12:125002827..125002855,-!p5@NCOR2!0.63!4.96!NCOR2;;chr2:176994408..176994492,+!p1@HOXD8!0.63!3.31!HOXD8;;chr19:52076425..52076440,+!p2@ZNF175!0.63!3.31!ZNF175;;chr11:65687158..65687216,+!p4@DRAP1!0.62!21.50!DRAP1;;chr3:170076314..170076334,+!p2@SKIL!0.62!4.41!SKIL;;chr11:65686776..65686787,+!p9@DRAP1!0.62!3.86!DRAP1;;chr9:4300050..4300118,-!p1@GLIS3!0.61!23.71!GLIS3;;chr15:96873861..96873872,+!p9@NR2F2!0.61!7.17!NR2F2;;chr6:34204672..34204692,+!p1@HMGA1!0.60!406.36!HMGA1;;chr15:96874244..96874259,+!p5@NR2F2!0.60!8.27!NR2F2;;chr6:1389789..1389821,+!p1@FOXF2!0.60!4.41!FOXF2;;chr3:52001426..52001447,-!p3@PCBP4!0.59!9.37!PCBP4;;chr8:72756063..72756125,-!p1@MSC!0.59!6.62!MSC;;chr1:37940102..37940131,+!p2@ZC3H12A!0.59!6.62!ZC3H12A;;chr8:145159846..145159889,+!p6@MAF1!0.59!4.41!MAF1;;chr15:66994615..66994630,+!p3@SMAD6!0.59!4.41!SMAD6;;chr12:26277929..26277955,-!p3@BHLHE41!0.59!4.41!BHLHE41;;chr12:66218443..66218461,+!p8@HMGA2!0.59!3.86!HMGA2;;chr15:96874145..96874166,+!p7@NR2F2!0.58!6.07!NR2F2;;chr12:80085061..80085119,-!p6@PAWR!0.58!4.96!PAWR;;chr6:126070769..126070801,+!p1@HEY2!0.58!3.31!HEY2;;chr1:164528445..164528459,+!p2@PBX1!0.57!9.92!PBX1;;chr17:59477233..59477263,+!p1@TBX2!0.57!9.92!TBX2;;chr17:46655704..46655718,-!p2@HOXB4!0.57!4.41!HOXB4;;chr15:67458861..67458879,+!p17@SMAD3!0.57!2.76!SMAD3;;chr16:31076332..31076388,-!p3@ZNF668!0.57!2.76!ZNF668;;chr5:142780189..142780223,-!p6@NR3C1!0.57!2.76!NR3C1;;chr6:10415484..10415508,-!p3@TFAP2A!0.57!2.76!TFAP2A;;chr7:27183114..27183138,-!p3@HOXA5!0.57!2.76!HOXA5;;chr8:106330543..106330554,+!p4@ZFPM2!0.57!2.76!ZFPM2;;chr8:2590287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| |expression_enrichment_score=chr9:132427883..132427951,+!p2@PRRX2!1.78!59.00!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.75!70.57!PRRX2;;chr8:55370487..55370503,+!p1@SOX17!1.69!47.97!SOX17;;chr7:27153454..27153469,-!p2@HOXA3!1.65!43.56!HOXA3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.58!36.94!ZBED1;;chr7:27170359..27170381,-!p1@HOXA4!1.50!30.88!HOXA4;;chr18:19749541..19749557,+!p1@GATA6!1.46!84.91!GATA6;;chr11:46299199..46299233,+!p1@CREB3L1!1.44!131.22!CREB3L1;;chr11:46299539..46299620,+!p2@CREB3L1!1.44!44.66!CREB3L1;;chr18:53068911..53068935,-!p4@TCF4!1.42!28.67!TCF4;;chr2:239756671..239756732,+!p1@TWIST2!1.41!78.29!TWIST2;;chr11:65686802..65686818,+!p6@DRAP1!1.39!40.80!DRAP1;;chr4:174451370..174451387,-!p1@HAND2!1.39!23.71!HAND2;;chr19:13134772..13134822,+!p2@NFIX!1.38!33.63!NFIX;;chr1:170632285..170632309,+!p1@PRRX1!1.38!25.91!PRRX1;;chr22:19748231..19748317,+!p1@TBX1!1.38!23.16!TBX1;;chr19:47523058..47523114,+!p1@NPAS1!1.33!20.40!NPAS1;;chr16:86600426..86600441,+!p1@FOXC2!1.32!48.52!FOXC2;;chr16:86544113..86544145,+!p1@FOXF1!1.32!24.81!FOXF1;;chr20:6748325..6748352,+!p1@BMP2!1.31!28.12!BMP2;;chr18:19749386..19749404,+!p2@GATA6!1.31!27.57!GATA6;;chr7:27183291..27183324,-!p1@HOXA5!1.27!17.64!HOXA5;;chr6:10415276..10415341,-!p2@TFAP2A!1.26!20.95!TFAP2A;;chr1:170633348..170633399,+!p2@PRRX1!1.23!21.50!PRRX1;;chr3:25470156..25470227,+!p2@RARB!1.22!15.44!RARB;;chr7:27183263..27183284,-!p2@HOXA5!1.22!15.44!HOXA5;;chr6:10412600..10412637,-!p1@TFAP2A!1.21!25.36!TFAP2A;;chr7:27153428..27153440,-!p3@HOXA3!1.19!14.34!HOXA3;;chr4:174450089..174450153,-!p2@HAND2!1.19!14.34!HAND2;;chr15:57511609..57511651,+!p2@TCF12!1.18!23.71!TCF12;;chr1:170633262..170633285,+!p3@PRRX1!1.18!15.99!PRRX1;;chr6:34204921..34204939,+!p3@HMGA1!1.13!375.48!HMGA1;;chr12:124873357..124873401,-!p1@NCOR2!1.13!144.46!NCOR2;;chr2:239756739..239756755,+!p2@TWIST2!1.11!20.40!TWIST2;;chr7:27142290..27142310,-!p1@HOXA2!1.10!11.58!HOXA2;;chr2:121493425..121493474,+!p1@GLI2!1.09!24.81!GLI2;;chr11:65687362..65687436,+!p3@DRAP1!1.08!50.73!DRAP1;;chr3:25469815..25469866,+!p3@RARB!1.08!11.03!RARB;;chr7:27170274..27170308,-!p3@HOXA4!1.08!11.03!HOXA4;;chr8:106330656..106330684,+!p1@ZFPM2!1.07!28.67!ZFPM2;;chr5:72744445..72744466,-!p2@FOXD1!1.06!17.64!FOXD1;;chr12:53614115..53614154,-!p1@RARG!1.05!55.69!RARG;;chr17:1959369..1959388,+!p2@HIC1!1.05!27.57!HIC1;;chr2:121493492..121493537,+!p2@GLI2!1.02!15.99!GLI2;;chr8:106330696..106330719,+!p2@ZFPM2!1.00!11.58!ZFPM2;;chr4:81104985..81105005,+!p4@PRDM8!1.00!11.03!PRDM8;;chr4:81105027..81105039,+!p3@PRDM8!1.00!10.48!PRDM8;;chr14:62162258..62162269,+!p2@HIF1A!0.99!87.12!HIF1A;;chr11:65686732..65686756,+!p2@DRAP1!0.99!38.04!DRAP1;;chr15:96869114..96869160,+!p11@NR2F2!0.99!12.13!NR2F2;;chr2:172967621..172967637,-!p1@DLX2!0.98!23.71!DLX2;;chr2:85981073..85981091,+!p5@ATOH8!0.97!8.27!ATOH8;;chr11:46299443..46299459,+!p4@CREB3L1!0.97!8.27!CREB3L1;;chr6:10412576..10412599,-!p5@TFAP2A!0.97!8.27!TFAP2A;;chr7:27153590..27153608,-!p7@HOXA3!0.97!8.27!HOXA3;;chr7:27169801..27169844,-!p2@HOXA4!0.97!8.27!HOXA4;;chr1:8938709..8938720,-!p3@ENO1!0.94!385.96!ENO1;;chr15:67430351..67430366,+!p10@SMAD3!0.94!7.72!SMAD3;;chr15:67458491..67458505,+!p18@SMAD3!0.94!7.72!SMAD3;;chr5:72744594..72744609,-!p1@FOXD1!0.93!35.84!FOXD1;;chr5:321810..321877,+!p1@AHRR!0.92!24.26!AHRR;;chr19:13134457..13134462,+!p5@NFIX!0.92!13.23!NFIX;;chr3:128206762..128206781,-!p2@GATA2!0.91!46.87!GATA2;;chr12:124873852..124873881,-!p3@NCOR2!0.91!45.21!NCOR2;;chr7:27183191..27183214,-!p4@HOXA5!0.91!7.17!HOXA5;;chr17:46622070..46622109,-!p1@HOXB2!0.90!15.99!HOXB2;;chr20:30193083..30193098,+!p1@ID1!0.89!568.46!ID1;;chr14:62162285..62162296,+!p3@HIF1A!0.89!36.94!HIF1A;;chr10:131762504..131762555,-!p1@EBF3!0.88!6.62!EBF3;;chr16:86600870..86600921,+!p2@FOXC2!0.88!6.62!FOXC2;;chr2:85981107..85981120,+!p3@ATOH8!0.88!6.62!ATOH8;;chr7:27183325..27183338,-!p5@HOXA5!0.88!6.62!HOXA5;;chr1:23885981..23886002,-!p1@ID3!0.87!1190.95!ID3;;chr1:170632959..170632987,+!p4@PRRX1!0.87!7.17!PRRX1;;chr11:46299186..46299195,+!p3@CREB3L1!0.87!7.17!CREB3L1;;chr17:46622114..46622138,-!p4@HOXB2!0.86!9.92!HOXB2;;chr11:65667884..65667895,-!p2@FOSL1!0.85!24.81!FOSL1;;chr2:19558373..19558392,-!p1@OSR1!0.85!17.64!OSR1;;chr7:137686763..137686784,-!p5@CREB3L2!0.85!11.03!CREB3L2;;chr7:27170324..27170335,-!p7@HOXA4!0.85!6.07!HOXA4;;chr13:37494248..37494260,-!p3@SMAD9!0.85!6.07!SMAD9;;chr19:13135386..13135435,+!p4@NFIX!0.85!6.07!NFIX;;chr1:170632439..170632465,+!p11@PRRX1!0.85!6.07!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.85!6.07!PRRX1;;chr2:172967242..172967265,-!p2@DLX2!0.85!6.07!DLX2;;chr14:24837368..24837401,+!p1@NFATC4!0.83!14.34!NFATC4;;chr19:13136130..13136165,+!p6@NFIX!0.83!7.72!NFIX;;chr3:141105705..141105770,+!p4@ZBTB38!0.83!7.17!ZBTB38;;chr11:65687243..65687276,+!p8@DRAP1!0.82!7.72!DRAP1;;chr15:67418177..67418204,+!p9@SMAD3!0.81!5.51!SMAD3;;chr17:41622731..41622764,-!p5@ETV4!0.81!5.51!ETV4;;chr18:19749353..19749367,+!p4@GATA6!0.81!5.51!GATA6;;chr1:170632115..170632136,+!p9@PRRX1!0.81!5.51!PRRX1;;chr11:65667846..65667868,-!p1@FOSL1!0.80!152.73!FOSL1;;chr2:185463247..185463263,+!p1@ZNF804A!0.80!9.92!ZNF804A;;chr21:36260295..36260310,-!p3@RUNX1!0.80!8.82!RUNX1;;chr12:54447599..54447630,+!p3@HOXC4!0.80!6.62!HOXC4;;chr1:151032860..151032918,+!p1@MLLT11!0.79!66.72!MLLT11;;chr12:115121962..115121987,-!p1@TBX3!0.79!47.42!TBX3;;chr3:141121847..141121868,+!p5@ZBTB38!0.79!8.27!ZBTB38;;chr2:200322654..200322707,-!p2@SATB2!0.79!7.72!SATB2;;chr17:41623692..41623715,-!p1@ETV4!0.78!23.16!ETV4;;chr18:19749517..19749531,+!p3@GATA6!0.78!9.37!GATA6;;chr7:1577899..1577943,+!p3@MAFK!0.78!4.96!MAFK;;chr1:170633058..170633084,+!p5@PRRX1!0.78!4.96!PRRX1;;chr19:45251943..45252006,+!p1@BCL3!0.76!138.94!BCL3;;chr12:66218598..66218645,+!p2@HMGA2!0.76!24.26!HMGA2;;chr2:85981222..85981259,+!p2@ATOH8!0.76!8.27!ATOH8;;chr11:65687222..65687240,+!p7@DRAP1!0.75!6.07!DRAP1;;chr10:77161504..77161530,-!p1@ZNF503!0.74!66.16!ZNF503;;chr2:85980951..85981004,+!p1@ATOH8!0.74!7.72!ATOH8;;chr2:66662281..66662308,+!p1@MEIS1!0.73!16.54!MEIS1;;chr6:1610293..1610310,+!p1@FOXC1!0.73!7.72!FOXC1;;chr4:81118647..81118666,+!p1@PRDM8!0.73!6.07!PRDM8;;chr15:67418119..67418162,+!p5@SMAD3!0.73!4.96!SMAD3;;chr15:96869165..96869183,+!p20@NR2F2!0.73!4.41!NR2F2;;chr2:172949484..172949522,+!p1@DLX1!0.73!4.41!DLX1;;chr2:172950227..172950249,+!p2@DLX1!0.73!4.41!DLX1;;chr2:172967276..172967296,-!p3@DLX2!0.73!4.41!DLX2;;chr1:170632683..170632696,+!p12@PRRX1!0.73!4.41!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.73!4.41!PRRX1;;chr7:27170042..27170064,-!p4@HOXA4!0.73!4.41!HOXA4;;chr8:40755333..40755352,-!p1@ZMAT4!0.73!4.41!ZMAT4;;chr17:3571863..3571881,-!p1@TAX1BP3!0.72!341.30!TAX1BP3;;chr4:81104895..81104920,+!p2@PRDM8!0.72!6.62!PRDM8;;chr19:38720294..38720348,-!p1@DPF1!0.72!5.51!DPF1;;chr3:141087393..141087426,+!p3@ZBTB38!0.71!18.20!ZBTB38;;chr17:41622765..41622821,-!p2@ETV4!0.71!6.62!ETV4;;chr4:81104958..81104981,+!p5@PRDM8!0.71!4.96!PRDM8;;chr6:85474299..85474324,-!p1@TBX18!0.70!7.72!TBX18;;chr17:46621937..46621966,-!p2@HOXB2!0.69!11.58!HOXB2;;chr6:85473156..85473210,-!p2@TBX18!0.69!4.96!TBX18;;chr7:27153443..27153450,-!p8@HOXA3!0.69!3.86!HOXA3;;chr7:27153613..27153630,-!p6@HOXA3!0.69!3.86!HOXA3;;chr7:35293685..35293718,-!p1@TBX20!0.69!3.86!TBX20;;chr1:170632250..170632277,+!p7@PRRX1!0.69!3.86!PRRX1;;chr2:172967353..172967365,-!p5@DLX2!0.69!3.86!DLX2;;chr2:8819364..8819390,+!p2@ID2!0.69!3.86!ID2;;chr12:54447637..54447659,+!p4@HOXC4!0.69!3.86!HOXC4;;chr15:67418047..67418093,+!p4@SMAD3!0.68!4.96!SMAD3;;chr6:10412392..10412409,-!p4@TFAP2A!0.68!4.41!TFAP2A;;chr1:8938766..8938774,-!p2@ENO1!0.67!293.33!ENO1;;chr19:13106214..13106382,+!p1@NFIX!0.67!99.25!NFIX;;chr6:34204973..34204990,+!p4@HMGA1!0.67!56.79!HMGA1;;chr20:48599506..48599526,+!p1@SNAI1!0.67!27.02!SNAI1;;chr11:65686952..65686975,+!p5@DRAP1!0.67!23.16!DRAP1;;chr2:71127699..71127744,+!p1@VAX2!0.67!8.27!VAX2;;chr19:45250948..45250998,+!p3@BCL3!0.66!9.92!BCL3;;chr3:25469724..25469773,+!p1@RARB!0.66!5.51!RARB;;chr8:72756267..72756296,-!p4@MSC!0.66!5.51!MSC;;chr1:8938736..8938756,-!p1@ENO1!0.65!4439.59!ENO1;;chr19:47922750..47922795,-!p1@MEIS3!0.65!6.07!MEIS3;;chr7:137686552..137686564,-!p9@CREB3L2!0.65!5.51!CREB3L2;;chr16:88519669..88519726,+!p1@ZFPM1!0.64!35.29!ZFPM1;;chr2:85360499..85360598,+!p1@TCF7L1!0.63!21.50!TCF7L1;;chr8:77593474..77593612,+!p1@ZFHX4!0.63!15.99!ZFHX4;;chr12:66218255..66218304,+!p3@HMGA2!0.63!9.92!HMGA2;;chr12:125002827..125002855,-!p5@NCOR2!0.63!4.96!NCOR2;;chr2:176994408..176994492,+!p1@HOXD8!0.63!3.31!HOXD8;;chr19:52076425..52076440,+!p2@ZNF175!0.63!3.31!ZNF175;;chr11:65687158..65687216,+!p4@DRAP1!0.62!21.50!DRAP1;;chr3:170076314..170076334,+!p2@SKIL!0.62!4.41!SKIL;;chr11:65686776..65686787,+!p9@DRAP1!0.62!3.86!DRAP1;;chr9:4300050..4300118,-!p1@GLIS3!0.61!23.71!GLIS3;;chr15:96873861..96873872,+!p9@NR2F2!0.61!7.17!NR2F2;;chr6:34204672..34204692,+!p1@HMGA1!0.60!406.36!HMGA1;;chr15:96874244..96874259,+!p5@NR2F2!0.60!8.27!NR2F2;;chr6:1389789..1389821,+!p1@FOXF2!0.60!4.41!FOXF2;;chr3:52001426..52001447,-!p3@PCBP4!0.59!9.37!PCBP4;;chr8:72756063..72756125,-!p1@MSC!0.59!6.62!MSC;;chr1:37940102..37940131,+!p2@ZC3H12A!0.59!6.62!ZC3H12A;;chr8:145159846..145159889,+!p6@MAF1!0.59!4.41!MAF1;;chr15:66994615..66994630,+!p3@SMAD6!0.59!4.41!SMAD6;;chr12:26277929..26277955,-!p3@BHLHE41!0.59!4.41!BHLHE41;;chr12:66218443..66218461,+!p8@HMGA2!0.59!3.86!HMGA2;;chr15:96874145..96874166,+!p7@NR2F2!0.58!6.07!NR2F2;;chr12:80085061..80085119,-!p6@PAWR!0.58!4.96!PAWR;;chr6:126070769..126070801,+!p1@HEY2!0.58!3.31!HEY2;;chr1:164528445..164528459,+!p2@PBX1!0.57!9.92!PBX1;;chr17:59477233..59477263,+!p1@TBX2!0.57!9.92!TBX2;;chr17:46655704..46655718,-!p2@HOXB4!0.57!4.41!HOXB4;;chr15:67458861..67458879,+!p17@SMAD3!0.57!2.76!SMAD3;;chr16:31076332..31076388,-!p3@ZNF668!0.57!2.76!ZNF668;;chr5:142780189..142780223,-!p6@NR3C1!0.57!2.76!NR3C1;;chr6:10415484..10415508,-!p3@TFAP2A!0.57!2.76!TFAP2A;;chr7:27183114..27183138,-!p3@HOXA5!0.57!2.76!HOXA5;;chr8:106330543..106330554,+!p4@ZFPM2!0.57!2.76!ZFPM2;;chr8:2590287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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002595;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003513;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor1.CNhs11090.11289-117A2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor1.CNhs11090.11289-117A2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor1.CNhs11090.11289-117A2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor1.CNhs11090.11289-117A2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor1.CNhs11090.11289-117A2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11289-117A2 | |id=FF:11289-117A2 | ||
|is_a=EFO:0002091;;FF:0000175 | |is_a=EFO:0002091;;FF:0000175 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11090 | |||
|library_id_phase_based=2:CNhs11090 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11289 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.GTCCGC.11289 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11289 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.GTCCGC.11289 | |||
|name=Smooth Muscle Cells - Subclavian Artery, donor1 | |name=Smooth Muscle Cells - Subclavian Artery, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11090,LSID724,release008,COMPLETED | |profile_hcage=CNhs11090,LSID724,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10004,,, | |profile_srnaseq=SRhi10004,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA3010-R10a | |rna_catalog_number=CA3010-R10a | ||
| Line 57: | Line 82: | ||
|rna_tube_id=117A2 | |rna_tube_id=117A2 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10004.GTCCGC | |||
|sample_age=27 | |sample_age=27 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 106: | ||
|top_motifs=HIF1A:1.88352492585;GZF1:1.63750191134;FOX{I1,J2}:1.62282103579;GTF2A1,2:1.58431770983;PBX1:1.34378735214;GLI1..3:1.25376873606;NKX3-1:1.15186440892;XCPE1{core}:1.09992013701;ZNF238:1.07273769672;IKZF1:1.02742595874;NFE2L1:0.990620592241;PPARG:0.978784295557;ZNF423:0.930757182078;POU2F1..3:0.892618740704;HOX{A5,B5}:0.84927131626;TFAP4:0.82319091584;TLX1..3_NFIC{dimer}:0.820525088395;EBF1:0.813222328921;TBP:0.78294130712;POU6F1:0.778953552521;TAL1_TCF{3,4,12}:0.761353542078;HMX1:0.751607358433;ESR1:0.746662743918;TP53:0.729624876403;ZIC1..3:0.724652627074;ATF6:0.717008858244;GCM1,2:0.70674415486;AHR_ARNT_ARNT2:0.702288414189;NANOG{mouse}:0.698061068548;HIC1:0.68542507562;SRF:0.673876802747;HES1:0.660461234635;NFIX:0.658825583611;MAFB:0.63378380946;ZBTB6:0.628392099413;PAX1,9:0.59154804365;GTF2I:0.589717443507;CRX:0.557961399174;NFATC1..3:0.557771959506;NFE2L2:0.545025881683;PATZ1:0.543048283209;TFCP2:0.532917574847;RXRA_VDR{dimer}:0.52046590205;TFAP2B:0.516598024;HOX{A6,A7,B6,B7}:0.510153684848;BACH2:0.505803382643;MTE{core}:0.489639318052;TEAD1:0.486617102415;FOS_FOS{B,L1}_JUN{B,D}:0.481083416337;ALX4:0.475085148592;DBP:0.455176369815;ZNF148:0.446914231651;XBP1:0.441798537305;TBX4,5:0.436827157276;FOSL2:0.431453422843;SOX17:0.423971724953;EN1,2:0.412408521726;AR:0.396350065091;NANOG:0.393217377028;TFAP2{A,C}:0.385655177464;SMAD1..7,9:0.381730407784;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.359955348946;REST:0.356028532953;SPZ1:0.330599630563;MYBL2:0.326184120207;ONECUT1,2:0.309895574071;FOXQ1:0.304740280337;bHLH_family:0.293077737087;SOX{8,9,10}:0.292358432132;NR5A1,2:0.284909367275;LEF1_TCF7_TCF7L1,2:0.278571598029;MZF1:0.277855918534;GFI1:0.277758343466;ALX1:0.272892522843;PRRX1,2:0.268286004422;EGR1..3:0.264378072889;POU3F1..4:0.250207466015;HAND1,2:0.249304634986;POU1F1:0.2439651437;NFE2:0.224970147526;HSF1,2:0.219888563748;MTF1:0.208666554142;HLF:0.205483702399;PAX6:0.204691774667;NHLH1,2:0.19820444722;PAX5:0.165878451175;E2F1..5:0.161268235373;SOX2:0.154252331534;MED-1{core}:0.145085142658;TFDP1:0.128819743713;STAT5{A,B}:0.122418209941;VSX1,2:0.122242736948;ELK1,4_GABP{A,B1}:0.0994088842696;MAZ:0.0968749594776;ARID5B:0.093866740056;HOXA9_MEIS1:0.0917510956366;MYFfamily:0.0736594122008;JUN:0.055484562448;KLF4:0.0535465390285;LHX3,4:0.0530250201547;NR6A1:0.0465509812367;YY1:0.0384169195663;HNF1A:0.0376242415705;PAX8:0.0322581517213;GFI1B:0.0227942995407;RREB1:0.00527036784753;SP1:0.00433268394219;NFY{A,B,C}:0.00425211904223;POU5F1:0.00311772663494;ZFP161:0.000357185790636;UFEwm:-0.00143345692033;ZNF143:-0.0219901551569;RFX1:-0.0345034752963;EP300:-0.0568830179088;MYB:-0.103370716447;ZNF384:-0.104758967678;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.105610550374;RXR{A,B,G}:-0.112199024804;HOX{A4,D4}:-0.120349593374;CEBPA,B_DDIT3:-0.136446412785;NR3C1:-0.14750033482;NRF1:-0.148202310787;CREB1:-0.161171707086;ATF2:-0.187816928427;NKX6-1,2:-0.189172262291;EVI1:-0.190020609702;HBP1_HMGB_SSRP1_UBTF:-0.198504885573;NR1H4:-0.203979651351;RUNX1..3:-0.210735012333;FOXL1:-0.221687919524;NFIL3:-0.24570514449;STAT2,4,6:-0.247003732968;PAX3,7:-0.252827135872;GATA4:-0.271407341518;PAX2:-0.279175746008;CDC5L:-0.280969663229;NFKB1_REL_RELA:-0.288177490136;ADNP_IRX_SIX_ZHX:-0.292271476715;LMO2:-0.296769386603;HNF4A_NR2F1,2:-0.299551806113;PRDM1:-0.31088814729;ETS1,2:-0.313605527535;SOX5:-0.338420643786;MEF2{A,B,C,D}:-0.341181544005;HMGA1,2:-0.364218399549;GATA6:-0.368729022941;ATF5_CREB3:-0.378446601929;TOPORS:-0.387047637754;PDX1:-0.405435892893;ELF1,2,4:-0.418358681837;NKX2-3_NKX2-5:-0.443997300584;NKX3-2:-0.453770763314;FOXM1:-0.47524260625;SPIB:-0.491916787337;SPI1:-0.515484960637;DMAP1_NCOR{1,2}_SMARC:-0.521597541972;BREu{core}:-0.52814545792;TLX2:-0.5334480593;FOX{D1,D2}:-0.552500064427;TGIF1:-0.564768988164;NKX2-2,8:-0.62585483668;FOXN1:-0.654182288855;TEF:-0.697405974094;RORA:-0.722388363201;FOX{F1,F2,J1}:-0.723708916418;CUX2:-0.765404531645;SNAI1..3:-0.796516149535;T:-0.809210557681;IRF1,2:-0.810759839084;ESRRA:-0.864986750955;BPTF:-0.865995998587;IRF7:-0.90991309453;ATF4:-0.945866715655;SREBF1,2:-0.954312029268;FOXP3:-0.954427951079;OCT4_SOX2{dimer}:-0.961228042851;ZEB1:-0.993734535604;NKX2-1,4:-1.0043313653;STAT1,3:-1.01578054532;FOXA2:-1.04645223295;FOXO1,3,4:-1.0633400036;AIRE:-1.10133441986;RFX2..5_RFXANK_RFXAP:-1.20329362474;MYOD1:-1.23711814837;ZBTB16:-1.25225956272;PITX1..3:-1.32163801386;IKZF2:-1.48158612156;FOXP1:-1.50712457951;PAX4:-1.5515525447;FOXD3:-1.5558892206;RBPJ:-1.75417978175;CDX1,2,4:-1.81413989232 | |top_motifs=HIF1A:1.88352492585;GZF1:1.63750191134;FOX{I1,J2}:1.62282103579;GTF2A1,2:1.58431770983;PBX1:1.34378735214;GLI1..3:1.25376873606;NKX3-1:1.15186440892;XCPE1{core}:1.09992013701;ZNF238:1.07273769672;IKZF1:1.02742595874;NFE2L1:0.990620592241;PPARG:0.978784295557;ZNF423:0.930757182078;POU2F1..3:0.892618740704;HOX{A5,B5}:0.84927131626;TFAP4:0.82319091584;TLX1..3_NFIC{dimer}:0.820525088395;EBF1:0.813222328921;TBP:0.78294130712;POU6F1:0.778953552521;TAL1_TCF{3,4,12}:0.761353542078;HMX1:0.751607358433;ESR1:0.746662743918;TP53:0.729624876403;ZIC1..3:0.724652627074;ATF6:0.717008858244;GCM1,2:0.70674415486;AHR_ARNT_ARNT2:0.702288414189;NANOG{mouse}:0.698061068548;HIC1:0.68542507562;SRF:0.673876802747;HES1:0.660461234635;NFIX:0.658825583611;MAFB:0.63378380946;ZBTB6:0.628392099413;PAX1,9:0.59154804365;GTF2I:0.589717443507;CRX:0.557961399174;NFATC1..3:0.557771959506;NFE2L2:0.545025881683;PATZ1:0.543048283209;TFCP2:0.532917574847;RXRA_VDR{dimer}:0.52046590205;TFAP2B:0.516598024;HOX{A6,A7,B6,B7}:0.510153684848;BACH2:0.505803382643;MTE{core}:0.489639318052;TEAD1:0.486617102415;FOS_FOS{B,L1}_JUN{B,D}:0.481083416337;ALX4:0.475085148592;DBP:0.455176369815;ZNF148:0.446914231651;XBP1:0.441798537305;TBX4,5:0.436827157276;FOSL2:0.431453422843;SOX17:0.423971724953;EN1,2:0.412408521726;AR:0.396350065091;NANOG:0.393217377028;TFAP2{A,C}:0.385655177464;SMAD1..7,9:0.381730407784;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.359955348946;REST:0.356028532953;SPZ1:0.330599630563;MYBL2:0.326184120207;ONECUT1,2:0.309895574071;FOXQ1:0.304740280337;bHLH_family:0.293077737087;SOX{8,9,10}:0.292358432132;NR5A1,2:0.284909367275;LEF1_TCF7_TCF7L1,2:0.278571598029;MZF1:0.277855918534;GFI1:0.277758343466;ALX1:0.272892522843;PRRX1,2:0.268286004422;EGR1..3:0.264378072889;POU3F1..4:0.250207466015;HAND1,2:0.249304634986;POU1F1:0.2439651437;NFE2:0.224970147526;HSF1,2:0.219888563748;MTF1:0.208666554142;HLF:0.205483702399;PAX6:0.204691774667;NHLH1,2:0.19820444722;PAX5:0.165878451175;E2F1..5:0.161268235373;SOX2:0.154252331534;MED-1{core}:0.145085142658;TFDP1:0.128819743713;STAT5{A,B}:0.122418209941;VSX1,2:0.122242736948;ELK1,4_GABP{A,B1}:0.0994088842696;MAZ:0.0968749594776;ARID5B:0.093866740056;HOXA9_MEIS1:0.0917510956366;MYFfamily:0.0736594122008;JUN:0.055484562448;KLF4:0.0535465390285;LHX3,4:0.0530250201547;NR6A1:0.0465509812367;YY1:0.0384169195663;HNF1A:0.0376242415705;PAX8:0.0322581517213;GFI1B:0.0227942995407;RREB1:0.00527036784753;SP1:0.00433268394219;NFY{A,B,C}:0.00425211904223;POU5F1:0.00311772663494;ZFP161:0.000357185790636;UFEwm:-0.00143345692033;ZNF143:-0.0219901551569;RFX1:-0.0345034752963;EP300:-0.0568830179088;MYB:-0.103370716447;ZNF384:-0.104758967678;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.105610550374;RXR{A,B,G}:-0.112199024804;HOX{A4,D4}:-0.120349593374;CEBPA,B_DDIT3:-0.136446412785;NR3C1:-0.14750033482;NRF1:-0.148202310787;CREB1:-0.161171707086;ATF2:-0.187816928427;NKX6-1,2:-0.189172262291;EVI1:-0.190020609702;HBP1_HMGB_SSRP1_UBTF:-0.198504885573;NR1H4:-0.203979651351;RUNX1..3:-0.210735012333;FOXL1:-0.221687919524;NFIL3:-0.24570514449;STAT2,4,6:-0.247003732968;PAX3,7:-0.252827135872;GATA4:-0.271407341518;PAX2:-0.279175746008;CDC5L:-0.280969663229;NFKB1_REL_RELA:-0.288177490136;ADNP_IRX_SIX_ZHX:-0.292271476715;LMO2:-0.296769386603;HNF4A_NR2F1,2:-0.299551806113;PRDM1:-0.31088814729;ETS1,2:-0.313605527535;SOX5:-0.338420643786;MEF2{A,B,C,D}:-0.341181544005;HMGA1,2:-0.364218399549;GATA6:-0.368729022941;ATF5_CREB3:-0.378446601929;TOPORS:-0.387047637754;PDX1:-0.405435892893;ELF1,2,4:-0.418358681837;NKX2-3_NKX2-5:-0.443997300584;NKX3-2:-0.453770763314;FOXM1:-0.47524260625;SPIB:-0.491916787337;SPI1:-0.515484960637;DMAP1_NCOR{1,2}_SMARC:-0.521597541972;BREu{core}:-0.52814545792;TLX2:-0.5334480593;FOX{D1,D2}:-0.552500064427;TGIF1:-0.564768988164;NKX2-2,8:-0.62585483668;FOXN1:-0.654182288855;TEF:-0.697405974094;RORA:-0.722388363201;FOX{F1,F2,J1}:-0.723708916418;CUX2:-0.765404531645;SNAI1..3:-0.796516149535;T:-0.809210557681;IRF1,2:-0.810759839084;ESRRA:-0.864986750955;BPTF:-0.865995998587;IRF7:-0.90991309453;ATF4:-0.945866715655;SREBF1,2:-0.954312029268;FOXP3:-0.954427951079;OCT4_SOX2{dimer}:-0.961228042851;ZEB1:-0.993734535604;NKX2-1,4:-1.0043313653;STAT1,3:-1.01578054532;FOXA2:-1.04645223295;FOXO1,3,4:-1.0633400036;AIRE:-1.10133441986;RFX2..5_RFXANK_RFXAP:-1.20329362474;MYOD1:-1.23711814837;ZBTB16:-1.25225956272;PITX1..3:-1.32163801386;IKZF2:-1.48158612156;FOXP1:-1.50712457951;PAX4:-1.5515525447;FOXD3:-1.5558892206;RBPJ:-1.75417978175;CDX1,2,4:-1.81413989232 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11289-117A2;search_select_hide=table117:FF:11289-117A2 | |||
}} | }} | ||
Latest revision as of 16:31, 3 June 2020
| Name: | Smooth Muscle Cells - Subclavian Artery, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11090 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11090
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11090
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.158 |
| 10 | 10 | 0.0834 |
| 100 | 100 | 0.335 |
| 101 | 101 | 0.0533 |
| 102 | 102 | 0.767 |
| 103 | 103 | 0.86 |
| 104 | 104 | 0.263 |
| 105 | 105 | 0.973 |
| 106 | 106 | 0.961 |
| 107 | 107 | 0.652 |
| 108 | 108 | 0.866 |
| 109 | 109 | 0.8 |
| 11 | 11 | 0.874 |
| 110 | 110 | 0.924 |
| 111 | 111 | 0.028 |
| 112 | 112 | 0.399 |
| 113 | 113 | 0.0569 |
| 114 | 114 | 0.976 |
| 115 | 115 | 0.485 |
| 116 | 116 | 0.115 |
| 117 | 117 | 0.334 |
| 118 | 118 | 0.368 |
| 119 | 119 | 0.433 |
| 12 | 12 | 0.727 |
| 120 | 120 | 0.968 |
| 121 | 121 | 0.357 |
| 122 | 122 | 0.925 |
| 123 | 123 | 0.00132 |
| 124 | 124 | 0.682 |
| 125 | 125 | 0.608 |
| 126 | 126 | 0.433 |
| 127 | 127 | 0.621 |
| 128 | 128 | 0.674 |
| 129 | 129 | 0.832 |
| 13 | 13 | 0.0786 |
| 130 | 130 | 0.0236 |
| 131 | 131 | 0.36 |
| 132 | 132 | 0.913 |
| 133 | 133 | 0.344 |
| 134 | 134 | 0.696 |
| 135 | 135 | 0.844 |
| 136 | 136 | 0.817 |
| 137 | 137 | 0.483 |
| 138 | 138 | 0.321 |
| 139 | 139 | 0.827 |
| 14 | 14 | 0.312 |
| 140 | 140 | 0.0863 |
| 141 | 141 | 0.00673 |
| 142 | 142 | 0.974 |
| 143 | 143 | 0.126 |
| 144 | 144 | 0.964 |
| 145 | 145 | 0.367 |
| 146 | 146 | 0.113 |
| 147 | 147 | 0.23 |
| 148 | 148 | 0.116 |
| 149 | 149 | 0.635 |
| 15 | 15 | 0.279 |
| 150 | 150 | 0.442 |
| 151 | 151 | 0.835 |
| 152 | 152 | 0.0204 |
| 153 | 153 | 0.489 |
| 154 | 154 | 0.481 |
| 155 | 155 | 0.59 |
| 156 | 156 | 0.75 |
| 157 | 157 | 0.88 |
| 158 | 158 | 0.023 |
| 159 | 159 | 0.346 |
| 16 | 16 | 0.533 |
| 160 | 160 | 0.821 |
| 161 | 161 | 0.954 |
| 162 | 162 | 0.352 |
| 163 | 163 | 0.839 |
| 164 | 164 | 0.638 |
| 165 | 165 | 0.312 |
| 166 | 166 | 0.813 |
| 167 | 167 | 0.305 |
| 168 | 168 | 0.399 |
| 169 | 169 | 0.2 |
| 17 | 17 | 0.63 |
| 18 | 18 | 0.515 |
| 19 | 19 | 0.605 |
| 2 | 2 | 0.436 |
| 20 | 20 | 0.249 |
| 21 | 21 | 0.532 |
| 22 | 22 | 0.369 |
| 23 | 23 | 0.424 |
| 24 | 24 | 0.542 |
| 25 | 25 | 0.179 |
| 26 | 26 | 0.246 |
| 27 | 27 | 0.788 |
| 28 | 28 | 0.0595 |
| 29 | 29 | 0.257 |
| 3 | 3 | 0.544 |
| 30 | 30 | 0.217 |
| 31 | 31 | 0.919 |
| 32 | 32 | 6.66898e-6 |
| 33 | 33 | 0.817 |
| 34 | 34 | 0.358 |
| 35 | 35 | 0.454 |
| 36 | 36 | 0.0563 |
| 37 | 37 | 0.977 |
| 38 | 38 | 0.708 |
| 39 | 39 | 0.225 |
| 4 | 4 | 0.903 |
| 40 | 40 | 0.983 |
| 41 | 41 | 0.418 |
| 42 | 42 | 0.926 |
| 43 | 43 | 0.649 |
| 44 | 44 | 0.337 |
| 45 | 45 | 0.618 |
| 46 | 46 | 0.618 |
| 47 | 47 | 0.519 |
| 48 | 48 | 0.85 |
| 49 | 49 | 0.0622 |
| 5 | 5 | 0.657 |
| 50 | 50 | 0.592 |
| 51 | 51 | 0.7 |
| 52 | 52 | 0.525 |
| 53 | 53 | 0.0577 |
| 54 | 54 | 0.614 |
| 55 | 55 | 0.686 |
| 56 | 56 | 0.699 |
| 57 | 57 | 0.641 |
| 58 | 58 | 0.193 |
| 59 | 59 | 0.596 |
| 6 | 6 | 0.883 |
| 60 | 60 | 0.17 |
| 61 | 61 | 0.289 |
| 62 | 62 | 0.237 |
| 63 | 63 | 0.963 |
| 64 | 64 | 0.717 |
| 65 | 65 | 0.717 |
| 66 | 66 | 0.39 |
| 67 | 67 | 0.808 |
| 68 | 68 | 0.00748 |
| 69 | 69 | 0.321 |
| 7 | 7 | 0.269 |
| 70 | 70 | 0.422 |
| 71 | 71 | 0.85 |
| 72 | 72 | 0.658 |
| 73 | 73 | 0.0207 |
| 74 | 74 | 0.843 |
| 75 | 75 | 0.709 |
| 76 | 76 | 0.236 |
| 77 | 77 | 0.379 |
| 78 | 78 | 0.202 |
| 79 | 79 | 0.309 |
| 8 | 8 | 0.803 |
| 80 | 80 | 0.734 |
| 81 | 81 | 0.546 |
| 82 | 82 | 0.301 |
| 83 | 83 | 0.586 |
| 84 | 84 | 0.463 |
| 85 | 85 | 0.984 |
| 86 | 86 | 0.63 |
| 87 | 87 | 0.0831 |
| 88 | 88 | 0.111 |
| 89 | 89 | 0.544 |
| 9 | 9 | 0.378 |
| 90 | 90 | 0.213 |
| 91 | 91 | 0.888 |
| 92 | 92 | 0.175 |
| 93 | 93 | 0.661 |
| 94 | 94 | 0.523 |
| 95 | 95 | 0.492 |
| 96 | 96 | 0.596 |
| 97 | 97 | 0.365 |
| 98 | 98 | 0.612 |
| 99 | 99 | 0.0122 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11090
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000175 human smooth muscle cell of subclavian artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002595 (smooth muscle cell of the subclavian artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0004573 (systemic artery)
0003834 (thoracic segment blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0003513 (trunk blood vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001533 (subclavian artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0000915 (thoracic segment of trunk)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000175 (human smooth muscle cell of subclavian artery sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
