FF:11289-117A2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005800 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005800 | ||
|accession_numbers=CAGE;DRX008501;DRR009373;DRZ000798;DRZ002183;DRZ012148;DRZ013533 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037048;DRR041414;DRZ007056 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0004573,UBERON:0003834,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0003513,UBERON:0010317,UBERON:0007798,UBERON:0001533,UBERON:0004535,UBERON:0004571,UBERON:0000915,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002595 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000175 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor1.CNhs11090.11289-117A2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor1.CNhs11090.11289-117A2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor1.CNhs11090.11289-117A2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor1.CNhs11090.11289-117A2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Subclavian%2520Artery%252c%2520donor1.CNhs11090.11289-117A2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11289-117A2 | |id=FF:11289-117A2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000175 | ||
|is_obsolete= | |||
|library_id=CNhs11090 | |||
|library_id_phase_based=2:CNhs11090 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11289 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.GTCCGC.11289 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11289 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.GTCCGC.11289 | |||
|name=Smooth Muscle Cells - Subclavian Artery, donor1 | |name=Smooth Muscle Cells - Subclavian Artery, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11090,LSID724,release008,COMPLETED | |profile_hcage=CNhs11090,LSID724,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10004,,, | |profile_srnaseq=SRhi10004,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.966691233595173,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.808551106683659,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.190714085371158,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0.190714085371158,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0543829083992857,0,0,0,0.0823045617452556,0.0417478713051157,0.095357042685579,0.190714085371158,0,0,-0.0980353512377064,-0.0431201581153162,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.736888744751447,1.10689437100744,0,0,0,0,0,0 | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA3010-R10a | |rna_catalog_number=CA3010-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117A2 | |rna_tube_id=117A2 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10004.GTCCGC | |||
|sample_age=27 | |sample_age=27 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=H | |sample_ethnicity=H | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.99835819066181e-209!GO:0005737;cytoplasm;1.99876921241137e-181!GO:0043231;intracellular membrane-bound organelle;1.31706365765264e-157!GO:0043226;organelle;1.31706365765264e-157!GO:0043229;intracellular organelle;1.94621376315226e-157!GO:0043227;membrane-bound organelle;2.99690792222654e-157!GO:0044444;cytoplasmic part;1.13310857000891e-133!GO:0044422;organelle part;4.33172728964363e-126!GO:0044446;intracellular organelle part;8.45604630138954e-125!GO:0032991;macromolecular complex;6.90596485826519e-85!GO:0005515;protein binding;2.463285255007e-78!GO:0044237;cellular metabolic process;1.23079331107391e-73!GO:0044238;primary metabolic process;3.04799138861369e-73!GO:0030529;ribonucleoprotein complex;3.30241929672598e-69!GO:0043170;macromolecule metabolic process;9.72804536706933e-66!GO:0005739;mitochondrion;3.98550752173877e-63!GO:0043233;organelle lumen;1.17462589215284e-62!GO:0031974;membrane-enclosed lumen;1.17462589215284e-62!GO:0044428;nuclear part;7.50305667896949e-56!GO:0031090;organelle membrane;8.75936536719448e-51!GO:0003723;RNA binding;6.02375073645304e-50!GO:0005634;nucleus;6.02375073645304e-50!GO:0019538;protein metabolic process;6.10211015317695e-47!GO:0005840;ribosome;3.88399191415423e-46!GO:0006412;translation;6.68855881198789e-46!GO:0043234;protein complex;1.74517822885061e-44!GO:0016043;cellular component organization and biogenesis;5.62179206217269e-43!GO:0044429;mitochondrial part;5.90944740127166e-43!GO:0044260;cellular macromolecule metabolic process;3.29744339312733e-42!GO:0009058;biosynthetic process;1.01292761780232e-41!GO:0003735;structural constituent of ribosome;1.45330351528376e-41!GO:0044267;cellular protein metabolic process;2.01582533242266e-41!GO:0044249;cellular biosynthetic process;5.8024358615769e-39!GO:0015031;protein transport;7.99879488025343e-39!GO:0031967;organelle envelope;5.74820140227434e-38!GO:0033036;macromolecule localization;1.0515194226299e-37!GO:0009059;macromolecule biosynthetic process;1.11709015134607e-37!GO:0031975;envelope;1.26915668591313e-37!GO:0005829;cytosol;2.17553484445663e-36!GO:0045184;establishment of protein localization;6.06801698448632e-36!GO:0008104;protein localization;2.59690327675178e-35!GO:0006396;RNA processing;8.33340270943266e-35!GO:0031981;nuclear lumen;8.41726013211371e-35!GO:0033279;ribosomal subunit;1.2154645830701e-34!GO:0043283;biopolymer metabolic process;1.53480605327078e-33!GO:0046907;intracellular transport;3.20401698279833e-31!GO:0005740;mitochondrial envelope;9.50358696636103e-29!GO:0006996;organelle organization and biogenesis;1.86211176899038e-28!GO:0010467;gene expression;1.37844054250199e-27!GO:0031966;mitochondrial membrane;2.69240861029338e-27!GO:0065003;macromolecular complex assembly;4.01434763931284e-27!GO:0006886;intracellular protein transport;1.95001969039538e-26!GO:0016071;mRNA metabolic process;3.17721911870513e-26!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.55968215855732e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.90051106526818e-26!GO:0043228;non-membrane-bound organelle;1.08947942620613e-25!GO:0043232;intracellular non-membrane-bound organelle;1.08947942620613e-25!GO:0019866;organelle inner membrane;1.30060453634711e-25!GO:0022607;cellular component assembly;1.55527849688154e-24!GO:0005743;mitochondrial inner membrane;2.14275214831275e-24!GO:0008380;RNA splicing;1.24759163197892e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.03078883433068e-23!GO:0006397;mRNA processing;1.43142345925961e-22!GO:0005783;endoplasmic reticulum;1.48635880203893e-22!GO:0006259;DNA metabolic process;1.94178258569706e-21!GO:0005654;nucleoplasm;2.66899136516291e-21!GO:0012505;endomembrane system;4.89574154507262e-21!GO:0006119;oxidative phosphorylation;6.42009788270426e-21!GO:0044445;cytosolic part;8.65662047059122e-21!GO:0016462;pyrophosphatase activity;6.75733013807385e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.63451175162125e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;1.06696220352681e-19!GO:0017111;nucleoside-triphosphatase activity;1.35467384611408e-19!GO:0051649;establishment of cellular localization;2.8342437194621e-19!GO:0000166;nucleotide binding;2.943685500773e-19!GO:0044455;mitochondrial membrane part;3.25620857517286e-19!GO:0051641;cellular localization;3.63552152874762e-19!GO:0007049;cell cycle;9.54950531531875e-19!GO:0015934;large ribosomal subunit;1.7719127135747e-18!GO:0044432;endoplasmic reticulum part;2.47689739303561e-18!GO:0005681;spliceosome;7.0853553952412e-18!GO:0048770;pigment granule;7.53322746110272e-18!GO:0042470;melanosome;7.53322746110272e-18!GO:0044451;nucleoplasm part;1.60852383523216e-17!GO:0031980;mitochondrial lumen;1.60852383523216e-17!GO:0005759;mitochondrial matrix;1.60852383523216e-17!GO:0005794;Golgi apparatus;2.42971919170759e-17!GO:0006457;protein folding;3.38731339539551e-17!GO:0015935;small ribosomal subunit;3.71698319671622e-17!GO:0016874;ligase activity;2.09193244077868e-16!GO:0006512;ubiquitin cycle;2.11870489239217e-15!GO:0051186;cofactor metabolic process;2.92729668107542e-15!GO:0008134;transcription factor binding;4.57360469089282e-15!GO:0006605;protein targeting;4.97850283151527e-15!GO:0005746;mitochondrial respiratory chain;5.348194894666e-15!GO:0032553;ribonucleotide binding;8.97043845713562e-15!GO:0032555;purine ribonucleotide binding;8.97043845713562e-15!GO:0022402;cell cycle process;9.60720016018115e-15!GO:0017076;purine nucleotide binding;1.22747442282042e-14!GO:0044265;cellular macromolecule catabolic process;1.27435849707436e-14!GO:0000502;proteasome complex (sensu Eukaryota);2.56384532444951e-14!GO:0043285;biopolymer catabolic process;3.73917215893605e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.99683791874747e-14!GO:0009057;macromolecule catabolic process;4.63644511504726e-14!GO:0000278;mitotic cell cycle;9.51952744540621e-14!GO:0022618;protein-RNA complex assembly;1.04637473890844e-13!GO:0005730;nucleolus;1.98331731657748e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.11148368583953e-13!GO:0003954;NADH dehydrogenase activity;2.11148368583953e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.11148368583953e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.16619173214575e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;2.84042052966427e-13!GO:0019941;modification-dependent protein catabolic process;5.01564552801345e-13!GO:0043632;modification-dependent macromolecule catabolic process;5.01564552801345e-13!GO:0044248;cellular catabolic process;5.16303191439458e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.06325246292203e-13!GO:0051082;unfolded protein binding;6.64917897766991e-13!GO:0044257;cellular protein catabolic process;6.8519994765219e-13!GO:0006511;ubiquitin-dependent protein catabolic process;7.99372477666574e-13!GO:0048193;Golgi vesicle transport;7.99372477666574e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.09513574753917e-12!GO:0043412;biopolymer modification;1.14998653576927e-12!GO:0030163;protein catabolic process;1.66562926221789e-12!GO:0005761;mitochondrial ribosome;2.47129522635475e-12!GO:0000313;organellar ribosome;2.47129522635475e-12!GO:0008135;translation factor activity, nucleic acid binding;3.13616046655439e-12!GO:0005789;endoplasmic reticulum membrane;3.1397528925374e-12!GO:0005524;ATP binding;5.59851458399989e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.23321556126575e-12!GO:0030964;NADH dehydrogenase complex (quinone);8.36122715333964e-12!GO:0045271;respiratory chain complex I;8.36122715333964e-12!GO:0005747;mitochondrial respiratory chain complex I;8.36122715333964e-12!GO:0005793;ER-Golgi intermediate compartment;8.52023636997972e-12!GO:0032559;adenyl ribonucleotide binding;9.45858505555959e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.027900533209e-11!GO:0042773;ATP synthesis coupled electron transport;1.027900533209e-11!GO:0006464;protein modification process;1.5210992276466e-11!GO:0030554;adenyl nucleotide binding;1.76637171014848e-11!GO:0006732;coenzyme metabolic process;1.92526693424045e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.66796576903224e-11!GO:0016192;vesicle-mediated transport;3.61326082716316e-11!GO:0003676;nucleic acid binding;3.76125268381635e-11!GO:0009259;ribonucleotide metabolic process;7.0050719446713e-11!GO:0006913;nucleocytoplasmic transport;1.04108993838648e-10!GO:0003712;transcription cofactor activity;2.28745012024041e-10!GO:0048523;negative regulation of cellular process;2.29000002464761e-10!GO:0009055;electron carrier activity;2.35228368235227e-10!GO:0051276;chromosome organization and biogenesis;2.43249997402792e-10!GO:0051169;nuclear transport;2.53247343489453e-10!GO:0006163;purine nucleotide metabolic process;3.06130667114566e-10!GO:0009150;purine ribonucleotide metabolic process;3.08212787599042e-10!GO:0005635;nuclear envelope;3.11880229056889e-10!GO:0042254;ribosome biogenesis and assembly;3.63941250888424e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;3.67385774648459e-10!GO:0016887;ATPase activity;5.67741831205703e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;7.66072784668424e-10!GO:0000375;RNA splicing, via transesterification reactions;7.66072784668424e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.66072784668424e-10!GO:0031965;nuclear membrane;9.90780024538249e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.00102278769695e-09!GO:0043687;post-translational protein modification;1.07077556443188e-09!GO:0008639;small protein conjugating enzyme activity;1.1227578070237e-09!GO:0044453;nuclear membrane part;1.15840580648348e-09!GO:0006323;DNA packaging;1.44343658757941e-09!GO:0042623;ATPase activity, coupled;1.63258365135955e-09!GO:0009260;ribonucleotide biosynthetic process;1.65268645600657e-09!GO:0007067;mitosis;1.69133625096255e-09!GO:0000087;M phase of mitotic cell cycle;1.70891458723903e-09!GO:0004842;ubiquitin-protein ligase activity;1.78791525343521e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.86036073382361e-09!GO:0016491;oxidoreductase activity;1.8607958473495e-09!GO:0006164;purine nucleotide biosynthetic process;1.89461236270309e-09!GO:0006974;response to DNA damage stimulus;1.98089702985247e-09!GO:0003743;translation initiation factor activity;2.11370212087106e-09!GO:0016070;RNA metabolic process;2.70175781950798e-09!GO:0009199;ribonucleoside triphosphate metabolic process;3.11273644689418e-09!GO:0012501;programmed cell death;3.11411349347248e-09!GO:0005694;chromosome;3.19236107147389e-09!GO:0065004;protein-DNA complex assembly;3.36711456374849e-09!GO:0051726;regulation of cell cycle;3.60035539853822e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.10840831783886e-09!GO:0019787;small conjugating protein ligase activity;4.32606669371393e-09!GO:0048519;negative regulation of biological process;4.60191920956741e-09!GO:0022403;cell cycle phase;4.76899652466215e-09!GO:0017038;protein import;4.87094286255583e-09!GO:0009141;nucleoside triphosphate metabolic process;5.15485438442121e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.23225592088444e-09!GO:0009144;purine nucleoside triphosphate metabolic process;5.23225592088444e-09!GO:0006915;apoptosis;5.4685896368195e-09!GO:0000074;regulation of progression through cell cycle;5.73101292513202e-09!GO:0005788;endoplasmic reticulum lumen;5.84827628143522e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.27305815543885e-09!GO:0006413;translational initiation;1.21373153643767e-08!GO:0006260;DNA replication;1.23780475184762e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.33536106785363e-08!GO:0044427;chromosomal part;1.35904527904738e-08!GO:0015986;ATP synthesis coupled proton transport;1.7463733075362e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.7463733075362e-08!GO:0030120;vesicle coat;2.33666973831008e-08!GO:0030662;coated vesicle membrane;2.33666973831008e-08!GO:0006446;regulation of translational initiation;2.56714719254336e-08!GO:0008219;cell death;2.5986439474505e-08!GO:0016265;death;2.5986439474505e-08!GO:0016881;acid-amino acid ligase activity;2.77721310079587e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.86555840128414e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.86555840128414e-08!GO:0008565;protein transporter activity;2.91260302242288e-08!GO:0006333;chromatin assembly or disassembly;3.37337203849273e-08!GO:0046034;ATP metabolic process;3.41459533878666e-08!GO:0005643;nuclear pore;3.74823638630836e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.95950967950731e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.95950967950731e-08!GO:0006888;ER to Golgi vesicle-mediated transport;5.31231680540691e-08!GO:0003924;GTPase activity;5.8242561922551e-08!GO:0016604;nuclear body;6.13677267063278e-08!GO:0006281;DNA repair;6.45452784807025e-08!GO:0006366;transcription from RNA polymerase II promoter;6.58914551926415e-08!GO:0009056;catabolic process;7.43366094698689e-08!GO:0009117;nucleotide metabolic process;7.9368708858022e-08!GO:0051301;cell division;7.94369908009936e-08!GO:0006399;tRNA metabolic process;8.63089212848577e-08!GO:0051188;cofactor biosynthetic process;9.27805528567597e-08!GO:0048475;coated membrane;1.00902588146929e-07!GO:0030117;membrane coat;1.00902588146929e-07!GO:0006334;nucleosome assembly;1.15226179028046e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.15715587269325e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.15715587269325e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.15715587269325e-07!GO:0009719;response to endogenous stimulus;1.27787729370278e-07!GO:0009060;aerobic respiration;1.55594003876059e-07!GO:0065002;intracellular protein transport across a membrane;1.88863631203014e-07!GO:0051246;regulation of protein metabolic process;1.89425011135646e-07!GO:0019829;cation-transporting ATPase activity;2.05066809549629e-07!GO:0043038;amino acid activation;2.27428501162284e-07!GO:0006418;tRNA aminoacylation for protein translation;2.27428501162284e-07!GO:0043039;tRNA aminoacylation;2.27428501162284e-07!GO:0006754;ATP biosynthetic process;2.87910898925719e-07!GO:0006753;nucleoside phosphate metabolic process;2.87910898925719e-07!GO:0006461;protein complex assembly;2.89130908167477e-07!GO:0046930;pore complex;3.0848375517462e-07!GO:0044431;Golgi apparatus part;3.89822422435296e-07!GO:0015078;hydrogen ion transmembrane transporter activity;4.54907656846571e-07!GO:0004386;helicase activity;4.56656285961584e-07!GO:0045333;cellular respiration;4.84238313991359e-07!GO:0031497;chromatin assembly;5.09320900764359e-07!GO:0006364;rRNA processing;5.65653517243245e-07!GO:0000785;chromatin;5.77508102982104e-07!GO:0016740;transferase activity;6.63937611671226e-07!GO:0008026;ATP-dependent helicase activity;7.74378292458066e-07!GO:0043069;negative regulation of programmed cell death;7.81192449221531e-07!GO:0016072;rRNA metabolic process;9.2977445701806e-07!GO:0000279;M phase;9.53490878791232e-07!GO:0016023;cytoplasmic membrane-bound vesicle;9.90183260819409e-07!GO:0005768;endosome;1.00771859439358e-06!GO:0016787;hydrolase activity;1.39235860422076e-06!GO:0031988;membrane-bound vesicle;1.48662728525205e-06!GO:0043066;negative regulation of apoptosis;1.4918586021711e-06!GO:0043067;regulation of programmed cell death;1.61388701820286e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.81617920451628e-06!GO:0006916;anti-apoptosis;1.92132998324605e-06!GO:0015630;microtubule cytoskeleton;2.02009896970367e-06!GO:0005667;transcription factor complex;2.02009896970367e-06!GO:0042981;regulation of apoptosis;2.03996730278803e-06!GO:0051170;nuclear import;2.17375176852563e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.37991187698591e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.85653001509362e-06!GO:0006606;protein import into nucleus;2.86439972923224e-06!GO:0050794;regulation of cellular process;3.25344727410071e-06!GO:0016607;nuclear speck;3.30926525763194e-06!GO:0051187;cofactor catabolic process;4.37519824139784e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.45235541874306e-06!GO:0006099;tricarboxylic acid cycle;4.7548815300362e-06!GO:0046356;acetyl-CoA catabolic process;4.7548815300362e-06!GO:0003714;transcription corepressor activity;4.80880920464138e-06!GO:0006091;generation of precursor metabolites and energy;6.02543026493906e-06!GO:0009108;coenzyme biosynthetic process;6.15519773736136e-06!GO:0031252;leading edge;6.19586557373053e-06!GO:0007005;mitochondrion organization and biogenesis;6.60587892594141e-06!GO:0006752;group transfer coenzyme metabolic process;6.6956471894044e-06!GO:0045259;proton-transporting ATP synthase complex;7.61397145109797e-06!GO:0045786;negative regulation of progression through cell cycle;7.6597269233207e-06!GO:0016567;protein ubiquitination;7.75093378534544e-06!GO:0005839;proteasome core complex (sensu Eukaryota);7.86035906361655e-06!GO:0006403;RNA localization;8.0852063758144e-06!GO:0050657;nucleic acid transport;8.20759933893884e-06!GO:0051236;establishment of RNA localization;8.20759933893884e-06!GO:0050658;RNA transport;8.20759933893884e-06!GO:0006084;acetyl-CoA metabolic process;9.01959788561271e-06!GO:0032446;protein modification by small protein conjugation;9.13126150337085e-06!GO:0005905;coated pit;9.13126150337085e-06!GO:0031410;cytoplasmic vesicle;9.62434952828287e-06!GO:0006793;phosphorus metabolic process;9.62434952828287e-06!GO:0006796;phosphate metabolic process;9.62434952828287e-06!GO:0016563;transcription activator activity;1.02927483501926e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.0479047391862e-05!GO:0031982;vesicle;1.06721876515549e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.10161034909917e-05!GO:0031324;negative regulation of cellular metabolic process;1.11908936519652e-05!GO:0000151;ubiquitin ligase complex;1.20632551429271e-05!GO:0003697;single-stranded DNA binding;1.23167045248493e-05!GO:0009109;coenzyme catabolic process;1.23167045248493e-05!GO:0005798;Golgi-associated vesicle;1.25588640855067e-05!GO:0005773;vacuole;1.32959576017045e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.33149653654668e-05!GO:0043566;structure-specific DNA binding;1.34408374772291e-05!GO:0008361;regulation of cell size;1.70886496939899e-05!GO:0005525;GTP binding;2.05411472469759e-05!GO:0000139;Golgi membrane;2.07139256778726e-05!GO:0016049;cell growth;2.20533434759217e-05!GO:0019867;outer membrane;2.30212804089806e-05!GO:0031968;organelle outer membrane;2.33902964641206e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.36237004910131e-05!GO:0003713;transcription coactivator activity;2.47795858790877e-05!GO:0008654;phospholipid biosynthetic process;2.65176850251348e-05!GO:0001558;regulation of cell growth;2.74325588758036e-05!GO:0045454;cell redox homeostasis;3.11646137377765e-05!GO:0044440;endosomal part;3.14715494405433e-05!GO:0010008;endosome membrane;3.14715494405433e-05!GO:0016779;nucleotidyltransferase activity;3.37306716958274e-05!GO:0016568;chromatin modification;3.47914153880452e-05!GO:0016853;isomerase activity;3.66816692637841e-05!GO:0030867;rough endoplasmic reticulum membrane;3.79460961718061e-05!GO:0005762;mitochondrial large ribosomal subunit;4.08179774419007e-05!GO:0000315;organellar large ribosomal subunit;4.08179774419007e-05!GO:0016310;phosphorylation;4.53701026872719e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.79069027026801e-05!GO:0009892;negative regulation of metabolic process;5.05510491310678e-05!GO:0030036;actin cytoskeleton organization and biogenesis;5.27803652894594e-05!GO:0004298;threonine endopeptidase activity;5.48646801724737e-05!GO:0033116;ER-Golgi intermediate compartment membrane;5.56521423857508e-05!GO:0005770;late endosome;5.66759890478664e-05!GO:0006613;cotranslational protein targeting to membrane;5.77818123009191e-05!GO:0016564;transcription repressor activity;5.95940564254276e-05!GO:0003724;RNA helicase activity;6.25421763866734e-05!GO:0000245;spliceosome assembly;7.34892244821426e-05!GO:0005741;mitochondrial outer membrane;7.90522904239566e-05!GO:0051329;interphase of mitotic cell cycle;8.09667432782086e-05!GO:0048522;positive regulation of cellular process;9.19535271229682e-05!GO:0032561;guanyl ribonucleotide binding;9.96644175965769e-05!GO:0019001;guanyl nucleotide binding;9.96644175965769e-05!GO:0005048;signal sequence binding;0.000107624579102897!GO:0000786;nucleosome;0.000108375040291764!GO:0006414;translational elongation;0.000110317674187847!GO:0051789;response to protein stimulus;0.0001383306265157!GO:0006986;response to unfolded protein;0.0001383306265157!GO:0000323;lytic vacuole;0.000142822697768034!GO:0005764;lysosome;0.000142822697768034!GO:0030176;integral to endoplasmic reticulum membrane;0.00014302947915555!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000146477759440268!GO:0044262;cellular carbohydrate metabolic process;0.000153266250157544!GO:0043284;biopolymer biosynthetic process;0.000156493043209245!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00016853210571247!GO:0043623;cellular protein complex assembly;0.000177459108645345!GO:0003899;DNA-directed RNA polymerase activity;0.000191719112753465!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000191719112753465!GO:0051028;mRNA transport;0.00019774847519497!GO:0005819;spindle;0.000202899579841474!GO:0009165;nucleotide biosynthetic process;0.000240673859916778!GO:0050789;regulation of biological process;0.000290947162943482!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000302941943866927!GO:0051325;interphase;0.000311435184340747!GO:0005813;centrosome;0.0003323175047666!GO:0007010;cytoskeleton organization and biogenesis;0.000354166944751754!GO:0030029;actin filament-based process;0.000375945676835994!GO:0008250;oligosaccharyl transferase complex;0.000398463377900579!GO:0051427;hormone receptor binding;0.000402871767182998!GO:0030133;transport vesicle;0.00041633627929005!GO:0005769;early endosome;0.000425008931163937!GO:0005815;microtubule organizing center;0.000500889273058645!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000559132984891059!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000614848478766976!GO:0004576;oligosaccharyl transferase activity;0.000653768706977853!GO:0030663;COPI coated vesicle membrane;0.000655981754779554!GO:0030126;COPI vesicle coat;0.000655981754779554!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000659986791570874!GO:0007264;small GTPase mediated signal transduction;0.000666758767089814!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000712659025459772!GO:0005885;Arp2/3 protein complex;0.000713908617888779!GO:0016859;cis-trans isomerase activity;0.0007266550826396!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.000778799107643928!GO:0035257;nuclear hormone receptor binding;0.000804330115507827!GO:0051920;peroxiredoxin activity;0.000826595833126129!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000850856852217642!GO:0015399;primary active transmembrane transporter activity;0.000850856852217642!GO:0040008;regulation of growth;0.000876066319569168!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000936125183825978!GO:0006612;protein targeting to membrane;0.000941294777106391!GO:0030137;COPI-coated vesicle;0.00094962659723435!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000956114563953667!GO:0030132;clathrin coat of coated pit;0.000991536658261788!GO:0008186;RNA-dependent ATPase activity;0.000991536658261788!GO:0065009;regulation of a molecular function;0.00104077021085357!GO:0046474;glycerophospholipid biosynthetic process;0.00108801037673027!GO:0019899;enzyme binding;0.00110600543566872!GO:0005791;rough endoplasmic reticulum;0.00111840692293063!GO:0043021;ribonucleoprotein binding;0.00115037740228545!GO:0019843;rRNA binding;0.0011597956106405!GO:0043681;protein import into mitochondrion;0.0011597956106405!GO:0006950;response to stress;0.0011908364871062!GO:0000314;organellar small ribosomal subunit;0.00119520474197282!GO:0005763;mitochondrial small ribosomal subunit;0.00119520474197282!GO:0016481;negative regulation of transcription;0.00128807678963449!GO:0030659;cytoplasmic vesicle membrane;0.00158430959040921!GO:0018196;peptidyl-asparagine modification;0.00161610434535414!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00161610434535414!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0016484802254967!GO:0046483;heterocycle metabolic process;0.00170675020486273!GO:0051168;nuclear export;0.00171124350030489!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00173253399282972!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00176260975544893!GO:0000059;protein import into nucleus, docking;0.00179788245325072!GO:0042802;identical protein binding;0.00185402740997618!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00192229161903427!GO:0045941;positive regulation of transcription;0.00203480427134006!GO:0030118;clathrin coat;0.00223254811277622!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00227412776470479!GO:0030658;transport vesicle membrane;0.00228741351871182!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00231961222350853!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00231961222350853!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00231961222350853!GO:0007050;cell cycle arrest;0.00241089232373454!GO:0004004;ATP-dependent RNA helicase activity;0.00247775947891597!GO:0045893;positive regulation of transcription, DNA-dependent;0.00248159130686053!GO:0048487;beta-tubulin binding;0.00250546538394827!GO:0006839;mitochondrial transport;0.00262355850077201!GO:0007243;protein kinase cascade;0.00262355850077201!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00266459491977379!GO:0006082;organic acid metabolic process;0.00266751026122776!GO:0008092;cytoskeletal protein binding;0.0027049132800346!GO:0007006;mitochondrial membrane organization and biogenesis;0.00278411816959844!GO:0019752;carboxylic acid metabolic process;0.00285252259842291!GO:0031543;peptidyl-proline dioxygenase activity;0.00306151598498174!GO:0048518;positive regulation of biological process;0.00327505143153912!GO:0046489;phosphoinositide biosynthetic process;0.00345589326607289!GO:0006261;DNA-dependent DNA replication;0.00345949670373909!GO:0030127;COPII vesicle coat;0.00351885402671291!GO:0012507;ER to Golgi transport vesicle membrane;0.00351885402671291!GO:0006626;protein targeting to mitochondrion;0.0035252022184417!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00356924657463617!GO:0006595;polyamine metabolic process;0.00357711316254018!GO:0030134;ER to Golgi transport vesicle;0.00359393546792381!GO:0044433;cytoplasmic vesicle part;0.00366315168660812!GO:0003684;damaged DNA binding;0.00376667439431928!GO:0005874;microtubule;0.00376667439431928!GO:0031418;L-ascorbic acid binding;0.00378246326890264!GO:0048471;perinuclear region of cytoplasm;0.00378246326890264!GO:0016044;membrane organization and biogenesis;0.0038060944405261!GO:0006383;transcription from RNA polymerase III promoter;0.00385066030032821!GO:0043492;ATPase activity, coupled to movement of substances;0.00389432663203745!GO:0008139;nuclear localization sequence binding;0.0040245747369934!GO:0017166;vinculin binding;0.00429087671687251!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00434733749497865!GO:0046467;membrane lipid biosynthetic process;0.00439705630526338!GO:0030521;androgen receptor signaling pathway;0.00449572663295786!GO:0007051;spindle organization and biogenesis;0.00461557593252792!GO:0015631;tubulin binding;0.00479665899360056!GO:0030027;lamellipodium;0.00487666201262249!GO:0006007;glucose catabolic process;0.004942595223358!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00504168722335783!GO:0019798;procollagen-proline dioxygenase activity;0.00509316584448169!GO:0045792;negative regulation of cell size;0.00529302812018454!GO:0003682;chromatin binding;0.00568480958889156!GO:0006740;NADPH regeneration;0.00585215768537131!GO:0006098;pentose-phosphate shunt;0.00585215768537131!GO:0030660;Golgi-associated vesicle membrane;0.00614730524980849!GO:0030308;negative regulation of cell growth;0.00637400363323379!GO:0006979;response to oxidative stress;0.00687210389113876!GO:0000082;G1/S transition of mitotic cell cycle;0.00708635066139689!GO:0006891;intra-Golgi vesicle-mediated transport;0.00734970559843505!GO:0007040;lysosome organization and biogenesis;0.0074561393673394!GO:0016363;nuclear matrix;0.00752509947226327!GO:0031072;heat shock protein binding;0.00760366124376148!GO:0015992;proton transport;0.00762141525538876!GO:0048468;cell development;0.00783348211910606!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00805869529375126!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00805869529375126!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00819381609831926!GO:0051252;regulation of RNA metabolic process;0.008550471119393!GO:0006818;hydrogen transport;0.0087663872274975!GO:0006778;porphyrin metabolic process;0.00878471905155654!GO:0033013;tetrapyrrole metabolic process;0.00878471905155654!GO:0006352;transcription initiation;0.00927329052441642!GO:0008632;apoptotic program;0.00945948234405469!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0094826825355781!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0094826825355781!GO:0030880;RNA polymerase complex;0.00961056991446923!GO:0048500;signal recognition particle;0.00964831531206332!GO:0004177;aminopeptidase activity;0.00965271244297183!GO:0008610;lipid biosynthetic process;0.00974168473692153!GO:0003678;DNA helicase activity;0.0102503873810806!GO:0003729;mRNA binding;0.0103465084803076!GO:0003690;double-stranded DNA binding;0.0103916970815091!GO:0043488;regulation of mRNA stability;0.0103916970815091!GO:0043487;regulation of RNA stability;0.0103916970815091!GO:0030119;AP-type membrane coat adaptor complex;0.0104016733181066!GO:0012506;vesicle membrane;0.010598194347699!GO:0042168;heme metabolic process;0.0107741096885366!GO:0051539;4 iron, 4 sulfur cluster binding;0.0109123833975035!GO:0022890;inorganic cation transmembrane transporter activity;0.0109965666023773!GO:0035258;steroid hormone receptor binding;0.011282837300316!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.011565211503719!GO:0046519;sphingoid metabolic process;0.0117686327755005!GO:0065007;biological regulation;0.0118009351377277!GO:0019206;nucleoside kinase activity;0.0119777520079867!GO:0019318;hexose metabolic process;0.0126832738389217!GO:0005996;monosaccharide metabolic process;0.012736726438851!GO:0005657;replication fork;0.0128182239129267!GO:0005862;muscle thin filament tropomyosin;0.0128182239129267!GO:0045892;negative regulation of transcription, DNA-dependent;0.0130743683301861!GO:0005869;dynactin complex;0.0132257684530247!GO:0030518;steroid hormone receptor signaling pathway;0.0133285718100068!GO:0030125;clathrin vesicle coat;0.0138750469037762!GO:0030665;clathrin coated vesicle membrane;0.0138750469037762!GO:0003746;translation elongation factor activity;0.0139803109299522!GO:0007242;intracellular signaling cascade;0.0140258268687087!GO:0007033;vacuole organization and biogenesis;0.0141510268255521!GO:0008094;DNA-dependent ATPase activity;0.0141510268255521!GO:0005684;U2-dependent spliceosome;0.0144682289411927!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0146127616969727!GO:0030131;clathrin adaptor complex;0.0148190681850258!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0148536450248503!GO:0051540;metal cluster binding;0.0153964142935638!GO:0051536;iron-sulfur cluster binding;0.0153964142935638!GO:0006497;protein amino acid lipidation;0.0154649124140327!GO:0006289;nucleotide-excision repair;0.0154649124140327!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0154649124140327!GO:0008047;enzyme activator activity;0.0155094833756109!GO:0006402;mRNA catabolic process;0.0157115157521621!GO:0005774;vacuolar membrane;0.0159760955496246!GO:0050662;coenzyme binding;0.0160069256711599!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0161473795942143!GO:0000775;chromosome, pericentric region;0.0161473795942143!GO:0016301;kinase activity;0.0172323009268654!GO:0006611;protein export from nucleus;0.0178201607959789!GO:0006509;membrane protein ectodomain proteolysis;0.0180388790528598!GO:0033619;membrane protein proteolysis;0.0180388790528598!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0188655752265885!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0191686334983043!GO:0000428;DNA-directed RNA polymerase complex;0.0191686334983043!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0197881839315808!GO:0004674;protein serine/threonine kinase activity;0.0201062994226347!GO:0000075;cell cycle checkpoint;0.0201325860099298!GO:0001726;ruffle;0.0202859622011544!GO:0005832;chaperonin-containing T-complex;0.0203193373764765!GO:0043433;negative regulation of transcription factor activity;0.0204632028305431!GO:0006118;electron transport;0.0206951150041818!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0209008643168538!GO:0045047;protein targeting to ER;0.0209008643168538!GO:0030041;actin filament polymerization;0.021495285851606!GO:0008154;actin polymerization and/or depolymerization;0.0219921422474082!GO:0008180;signalosome;0.0220241553931406!GO:0000049;tRNA binding;0.0221521278030491!GO:0003711;transcription elongation regulator activity;0.0222517438024285!GO:0006417;regulation of translation;0.0222751981397678!GO:0001666;response to hypoxia;0.0222808557156548!GO:0006520;amino acid metabolic process;0.0222999917195237!GO:0007265;Ras protein signal transduction;0.0228259962304529!GO:0022415;viral reproductive process;0.0233766255738397!GO:0050811;GABA receptor binding;0.0235852575648767!GO:0051059;NF-kappaB binding;0.0243552530084756!GO:0006401;RNA catabolic process;0.0244377512697372!GO:0033673;negative regulation of kinase activity;0.0247212296468209!GO:0006469;negative regulation of protein kinase activity;0.0247212296468209!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0247856144564201!GO:0015002;heme-copper terminal oxidase activity;0.0247856144564201!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0247856144564201!GO:0004129;cytochrome-c oxidase activity;0.0247856144564201!GO:0009112;nucleobase metabolic process;0.0248689384263373!GO:0001527;microfibril;0.0249794370090775!GO:0031301;integral to organelle membrane;0.0250334401296077!GO:0016584;nucleosome positioning;0.0253090422794266!GO:0008022;protein C-terminus binding;0.0256611640492823!GO:0046365;monosaccharide catabolic process;0.0257463223343991!GO:0031124;mRNA 3'-end processing;0.0257463223343991!GO:0006779;porphyrin biosynthetic process;0.0258624972980801!GO:0033014;tetrapyrrole biosynthetic process;0.0258624972980801!GO:0000030;mannosyltransferase activity;0.0259978576325263!GO:0006672;ceramide metabolic process;0.0260591559960771!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0262932977359699!GO:0006650;glycerophospholipid metabolic process;0.0269727427238516!GO:0031529;ruffle organization and biogenesis;0.0270383005944053!GO:0008312;7S RNA binding;0.0271430153420505!GO:0003756;protein disulfide isomerase activity;0.0272893098825157!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0272893098825157!GO:0051087;chaperone binding;0.0272893098825157!GO:0050790;regulation of catalytic activity;0.0278848572232306!GO:0000209;protein polyubiquitination;0.028197111423374!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0282340191263056!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0282858202332079!GO:0051101;regulation of DNA binding;0.0285528448570994!GO:0030433;ER-associated protein catabolic process;0.0290256839667371!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0290256839667371!GO:0008033;tRNA processing;0.0294014622191118!GO:0051348;negative regulation of transferase activity;0.0294264916300873!GO:0009889;regulation of biosynthetic process;0.0304066172521666!GO:0044452;nucleolar part;0.0304399828785549!GO:0000339;RNA cap binding;0.0305006209491312!GO:0030128;clathrin coat of endocytic vesicle;0.0306098055512103!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0306098055512103!GO:0030122;AP-2 adaptor complex;0.0306098055512103!GO:0045926;negative regulation of growth;0.0309172809993072!GO:0006405;RNA export from nucleus;0.0309502426673633!GO:0006506;GPI anchor biosynthetic process;0.0314296843415836!GO:0031272;regulation of pseudopodium formation;0.0314351906523243!GO:0031269;pseudopodium formation;0.0314351906523243!GO:0031344;regulation of cell projection organization and biogenesis;0.0314351906523243!GO:0031268;pseudopodium organization and biogenesis;0.0314351906523243!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0314351906523243!GO:0031274;positive regulation of pseudopodium formation;0.0314351906523243!GO:0006783;heme biosynthetic process;0.031553601169895!GO:0044437;vacuolar part;0.0316604605762475!GO:0043022;ribosome binding;0.0318767768016017!GO:0045334;clathrin-coated endocytic vesicle;0.0320126936215025!GO:0007346;regulation of progression through mitotic cell cycle;0.0322999196649926!GO:0008538;proteasome activator activity;0.0324780324379055!GO:0032507;maintenance of cellular protein localization;0.0325493193404523!GO:0006635;fatty acid beta-oxidation;0.0328227960905368!GO:0048144;fibroblast proliferation;0.0332850052545741!GO:0048145;regulation of fibroblast proliferation;0.0332850052545741!GO:0007088;regulation of mitosis;0.0334981479451705!GO:0051128;regulation of cellular component organization and biogenesis;0.0346301452807065!GO:0006378;mRNA polyadenylation;0.0346301452807065!GO:0009303;rRNA transcription;0.0358086653264164!GO:0000096;sulfur amino acid metabolic process;0.0359424157507466!GO:0050681;androgen receptor binding;0.0359492477453824!GO:0009967;positive regulation of signal transduction;0.0359841741684009!GO:0004003;ATP-dependent DNA helicase activity;0.0361115449169806!GO:0035035;histone acetyltransferase binding;0.0368155521405012!GO:0019320;hexose catabolic process;0.0370466885501168!GO:0051098;regulation of binding;0.0370676045673851!GO:0043189;H4/H2A histone acetyltransferase complex;0.0371239548036303!GO:0006096;glycolysis;0.0371595057659928!GO:0032508;DNA duplex unwinding;0.0371869761595463!GO:0032392;DNA geometric change;0.0371869761595463!GO:0046822;regulation of nucleocytoplasmic transport;0.0372083712722095!GO:0032906;transforming growth factor-beta2 production;0.0372083712722095!GO:0032909;regulation of transforming growth factor-beta2 production;0.0372083712722095!GO:0030522;intracellular receptor-mediated signaling pathway;0.0375529370856565!GO:0006739;NADP metabolic process;0.0378817307684835!GO:0008147;structural constituent of bone;0.0380688709230785!GO:0006002;fructose 6-phosphate metabolic process;0.0385664512875775!GO:0030384;phosphoinositide metabolic process;0.0391039513056578!GO:0006897;endocytosis;0.0392064700672741!GO:0010324;membrane invagination;0.0392064700672741!GO:0051287;NAD binding;0.0394201723428862!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0397017959679543!GO:0006693;prostaglandin metabolic process;0.0397017959679543!GO:0006692;prostanoid metabolic process;0.0397017959679543!GO:0035267;NuA4 histone acetyltransferase complex;0.0397017959679543!GO:0031625;ubiquitin protein ligase binding;0.0397017959679543!GO:0051235;maintenance of localization;0.0399958677937702!GO:0031902;late endosome membrane;0.0399958677937702!GO:0045936;negative regulation of phosphate metabolic process;0.0403301701210292!GO:0006807;nitrogen compound metabolic process;0.0406723999862389!GO:0006607;NLS-bearing substrate import into nucleus;0.0408715652246128!GO:0006220;pyrimidine nucleotide metabolic process;0.0409940938168975!GO:0042158;lipoprotein biosynthetic process;0.0410478564545413!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0411354297084019!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0411354297084019!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0411731706574259!GO:0006376;mRNA splice site selection;0.0411731706574259!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0411731706574259!GO:0008243;plasminogen activator activity;0.0414942035871432!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0421426464396249!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0421426464396249!GO:0006354;RNA elongation;0.042381459103492!GO:0016860;intramolecular oxidoreductase activity;0.0425441285049687!GO:0006505;GPI anchor metabolic process;0.0425441285049687!GO:0005096;GTPase activator activity;0.0426881456199632!GO:0046164;alcohol catabolic process;0.0426881456199632!GO:0016408;C-acyltransferase activity;0.0428756036436718!GO:0006984;ER-nuclear signaling pathway;0.0432655330629946!GO:0005669;transcription factor TFIID complex;0.0436383353289901!GO:0030911;TPR domain binding;0.0438053269597531!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.043865969250095!GO:0030149;sphingolipid catabolic process;0.043865969250095!GO:0005637;nuclear inner membrane;0.0444370257750134!GO:0031326;regulation of cellular biosynthetic process;0.0445919543707455!GO:0005784;translocon complex;0.0458896224862857!GO:0005586;collagen type III;0.0472391322331464!GO:0019222;regulation of metabolic process;0.0475099617105704!GO:0022408;negative regulation of cell-cell adhesion;0.0482577889687548!GO:0048146;positive regulation of fibroblast proliferation;0.0486884373731955!GO:0050178;phenylpyruvate tautomerase activity;0.0492156034011238!GO:0007030;Golgi organization and biogenesis;0.0492308740784631!GO:0015036;disulfide oxidoreductase activity;0.0492365915840018!GO:0045185;maintenance of protein localization;0.0493106504539834!GO:0003923;GPI-anchor transamidase activity;0.0493106504539834!GO:0016255;attachment of GPI anchor to protein;0.0493106504539834!GO:0042765;GPI-anchor transamidase complex;0.0493106504539834!GO:0000123;histone acetyltransferase complex;0.0493106504539834!GO:0006284;base-excision repair;0.0495249194303202 | |||
|sample_id=11289 | |sample_id=11289 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=subclavian artery | |sample_tissue=subclavian artery | ||
|top_motifs=HIF1A:1.88352492585;GZF1:1.63750191134;FOX{I1,J2}:1.62282103579;GTF2A1,2:1.58431770983;PBX1:1.34378735214;GLI1..3:1.25376873606;NKX3-1:1.15186440892;XCPE1{core}:1.09992013701;ZNF238:1.07273769672;IKZF1:1.02742595874;NFE2L1:0.990620592241;PPARG:0.978784295557;ZNF423:0.930757182078;POU2F1..3:0.892618740704;HOX{A5,B5}:0.84927131626;TFAP4:0.82319091584;TLX1..3_NFIC{dimer}:0.820525088395;EBF1:0.813222328921;TBP:0.78294130712;POU6F1:0.778953552521;TAL1_TCF{3,4,12}:0.761353542078;HMX1:0.751607358433;ESR1:0.746662743918;TP53:0.729624876403;ZIC1..3:0.724652627074;ATF6:0.717008858244;GCM1,2:0.70674415486;AHR_ARNT_ARNT2:0.702288414189;NANOG{mouse}:0.698061068548;HIC1:0.68542507562;SRF:0.673876802747;HES1:0.660461234635;NFIX:0.658825583611;MAFB:0.63378380946;ZBTB6:0.628392099413;PAX1,9:0.59154804365;GTF2I:0.589717443507;CRX:0.557961399174;NFATC1..3:0.557771959506;NFE2L2:0.545025881683;PATZ1:0.543048283209;TFCP2:0.532917574847;RXRA_VDR{dimer}:0.52046590205;TFAP2B:0.516598024;HOX{A6,A7,B6,B7}:0.510153684848;BACH2:0.505803382643;MTE{core}:0.489639318052;TEAD1:0.486617102415;FOS_FOS{B,L1}_JUN{B,D}:0.481083416337;ALX4:0.475085148592;DBP:0.455176369815;ZNF148:0.446914231651;XBP1:0.441798537305;TBX4,5:0.436827157276;FOSL2:0.431453422843;SOX17:0.423971724953;EN1,2:0.412408521726;AR:0.396350065091;NANOG:0.393217377028;TFAP2{A,C}:0.385655177464;SMAD1..7,9:0.381730407784;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.359955348946;REST:0.356028532953;SPZ1:0.330599630563;MYBL2:0.326184120207;ONECUT1,2:0.309895574071;FOXQ1:0.304740280337;bHLH_family:0.293077737087;SOX{8,9,10}:0.292358432132;NR5A1,2:0.284909367275;LEF1_TCF7_TCF7L1,2:0.278571598029;MZF1:0.277855918534;GFI1:0.277758343466;ALX1:0.272892522843;PRRX1,2:0.268286004422;EGR1..3:0.264378072889;POU3F1..4:0.250207466015;HAND1,2:0.249304634986;POU1F1:0.2439651437;NFE2:0.224970147526;HSF1,2:0.219888563748;MTF1:0.208666554142;HLF:0.205483702399;PAX6:0.204691774667;NHLH1,2:0.19820444722;PAX5:0.165878451175;E2F1..5:0.161268235373;SOX2:0.154252331534;MED-1{core}:0.145085142658;TFDP1:0.128819743713;STAT5{A,B}:0.122418209941;VSX1,2:0.122242736948;ELK1,4_GABP{A,B1}:0.0994088842696;MAZ:0.0968749594776;ARID5B:0.093866740056;HOXA9_MEIS1:0.0917510956366;MYFfamily:0.0736594122008;JUN:0.055484562448;KLF4:0.0535465390285;LHX3,4:0.0530250201547;NR6A1:0.0465509812367;YY1:0.0384169195663;HNF1A:0.0376242415705;PAX8:0.0322581517213;GFI1B:0.0227942995407;RREB1:0.00527036784753;SP1:0.00433268394219;NFY{A,B,C}:0.00425211904223;POU5F1:0.00311772663494;ZFP161:0.000357185790636;UFEwm:-0.00143345692033;ZNF143:-0.0219901551569;RFX1:-0.0345034752963;EP300:-0.0568830179088;MYB:-0.103370716447;ZNF384:-0.104758967678;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.105610550374;RXR{A,B,G}:-0.112199024804;HOX{A4,D4}:-0.120349593374;CEBPA,B_DDIT3:-0.136446412785;NR3C1:-0.14750033482;NRF1:-0.148202310787;CREB1:-0.161171707086;ATF2:-0.187816928427;NKX6-1,2:-0.189172262291;EVI1:-0.190020609702;HBP1_HMGB_SSRP1_UBTF:-0.198504885573;NR1H4:-0.203979651351;RUNX1..3:-0.210735012333;FOXL1:-0.221687919524;NFIL3:-0.24570514449;STAT2,4,6:-0.247003732968;PAX3,7:-0.252827135872;GATA4:-0.271407341518;PAX2:-0.279175746008;CDC5L:-0.280969663229;NFKB1_REL_RELA:-0.288177490136;ADNP_IRX_SIX_ZHX:-0.292271476715;LMO2:-0.296769386603;HNF4A_NR2F1,2:-0.299551806113;PRDM1:-0.31088814729;ETS1,2:-0.313605527535;SOX5:-0.338420643786;MEF2{A,B,C,D}:-0.341181544005;HMGA1,2:-0.364218399549;GATA6:-0.368729022941;ATF5_CREB3:-0.378446601929;TOPORS:-0.387047637754;PDX1:-0.405435892893;ELF1,2,4:-0.418358681837;NKX2-3_NKX2-5:-0.443997300584;NKX3-2:-0.453770763314;FOXM1:-0.47524260625;SPIB:-0.491916787337;SPI1:-0.515484960637;DMAP1_NCOR{1,2}_SMARC:-0.521597541972;BREu{core}:-0.52814545792;TLX2:-0.5334480593;FOX{D1,D2}:-0.552500064427;TGIF1:-0.564768988164;NKX2-2,8:-0.62585483668;FOXN1:-0.654182288855;TEF:-0.697405974094;RORA:-0.722388363201;FOX{F1,F2,J1}:-0.723708916418;CUX2:-0.765404531645;SNAI1..3:-0.796516149535;T:-0.809210557681;IRF1,2:-0.810759839084;ESRRA:-0.864986750955;BPTF:-0.865995998587;IRF7:-0.90991309453;ATF4:-0.945866715655;SREBF1,2:-0.954312029268;FOXP3:-0.954427951079;OCT4_SOX2{dimer}:-0.961228042851;ZEB1:-0.993734535604;NKX2-1,4:-1.0043313653;STAT1,3:-1.01578054532;FOXA2:-1.04645223295;FOXO1,3,4:-1.0633400036;AIRE:-1.10133441986;RFX2..5_RFXANK_RFXAP:-1.20329362474;MYOD1:-1.23711814837;ZBTB16:-1.25225956272;PITX1..3:-1.32163801386;IKZF2:-1.48158612156;FOXP1:-1.50712457951;PAX4:-1.5515525447;FOXD3:-1.5558892206;RBPJ:-1.75417978175;CDX1,2,4:-1.81413989232 | |top_motifs=HIF1A:1.88352492585;GZF1:1.63750191134;FOX{I1,J2}:1.62282103579;GTF2A1,2:1.58431770983;PBX1:1.34378735214;GLI1..3:1.25376873606;NKX3-1:1.15186440892;XCPE1{core}:1.09992013701;ZNF238:1.07273769672;IKZF1:1.02742595874;NFE2L1:0.990620592241;PPARG:0.978784295557;ZNF423:0.930757182078;POU2F1..3:0.892618740704;HOX{A5,B5}:0.84927131626;TFAP4:0.82319091584;TLX1..3_NFIC{dimer}:0.820525088395;EBF1:0.813222328921;TBP:0.78294130712;POU6F1:0.778953552521;TAL1_TCF{3,4,12}:0.761353542078;HMX1:0.751607358433;ESR1:0.746662743918;TP53:0.729624876403;ZIC1..3:0.724652627074;ATF6:0.717008858244;GCM1,2:0.70674415486;AHR_ARNT_ARNT2:0.702288414189;NANOG{mouse}:0.698061068548;HIC1:0.68542507562;SRF:0.673876802747;HES1:0.660461234635;NFIX:0.658825583611;MAFB:0.63378380946;ZBTB6:0.628392099413;PAX1,9:0.59154804365;GTF2I:0.589717443507;CRX:0.557961399174;NFATC1..3:0.557771959506;NFE2L2:0.545025881683;PATZ1:0.543048283209;TFCP2:0.532917574847;RXRA_VDR{dimer}:0.52046590205;TFAP2B:0.516598024;HOX{A6,A7,B6,B7}:0.510153684848;BACH2:0.505803382643;MTE{core}:0.489639318052;TEAD1:0.486617102415;FOS_FOS{B,L1}_JUN{B,D}:0.481083416337;ALX4:0.475085148592;DBP:0.455176369815;ZNF148:0.446914231651;XBP1:0.441798537305;TBX4,5:0.436827157276;FOSL2:0.431453422843;SOX17:0.423971724953;EN1,2:0.412408521726;AR:0.396350065091;NANOG:0.393217377028;TFAP2{A,C}:0.385655177464;SMAD1..7,9:0.381730407784;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.359955348946;REST:0.356028532953;SPZ1:0.330599630563;MYBL2:0.326184120207;ONECUT1,2:0.309895574071;FOXQ1:0.304740280337;bHLH_family:0.293077737087;SOX{8,9,10}:0.292358432132;NR5A1,2:0.284909367275;LEF1_TCF7_TCF7L1,2:0.278571598029;MZF1:0.277855918534;GFI1:0.277758343466;ALX1:0.272892522843;PRRX1,2:0.268286004422;EGR1..3:0.264378072889;POU3F1..4:0.250207466015;HAND1,2:0.249304634986;POU1F1:0.2439651437;NFE2:0.224970147526;HSF1,2:0.219888563748;MTF1:0.208666554142;HLF:0.205483702399;PAX6:0.204691774667;NHLH1,2:0.19820444722;PAX5:0.165878451175;E2F1..5:0.161268235373;SOX2:0.154252331534;MED-1{core}:0.145085142658;TFDP1:0.128819743713;STAT5{A,B}:0.122418209941;VSX1,2:0.122242736948;ELK1,4_GABP{A,B1}:0.0994088842696;MAZ:0.0968749594776;ARID5B:0.093866740056;HOXA9_MEIS1:0.0917510956366;MYFfamily:0.0736594122008;JUN:0.055484562448;KLF4:0.0535465390285;LHX3,4:0.0530250201547;NR6A1:0.0465509812367;YY1:0.0384169195663;HNF1A:0.0376242415705;PAX8:0.0322581517213;GFI1B:0.0227942995407;RREB1:0.00527036784753;SP1:0.00433268394219;NFY{A,B,C}:0.00425211904223;POU5F1:0.00311772663494;ZFP161:0.000357185790636;UFEwm:-0.00143345692033;ZNF143:-0.0219901551569;RFX1:-0.0345034752963;EP300:-0.0568830179088;MYB:-0.103370716447;ZNF384:-0.104758967678;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.105610550374;RXR{A,B,G}:-0.112199024804;HOX{A4,D4}:-0.120349593374;CEBPA,B_DDIT3:-0.136446412785;NR3C1:-0.14750033482;NRF1:-0.148202310787;CREB1:-0.161171707086;ATF2:-0.187816928427;NKX6-1,2:-0.189172262291;EVI1:-0.190020609702;HBP1_HMGB_SSRP1_UBTF:-0.198504885573;NR1H4:-0.203979651351;RUNX1..3:-0.210735012333;FOXL1:-0.221687919524;NFIL3:-0.24570514449;STAT2,4,6:-0.247003732968;PAX3,7:-0.252827135872;GATA4:-0.271407341518;PAX2:-0.279175746008;CDC5L:-0.280969663229;NFKB1_REL_RELA:-0.288177490136;ADNP_IRX_SIX_ZHX:-0.292271476715;LMO2:-0.296769386603;HNF4A_NR2F1,2:-0.299551806113;PRDM1:-0.31088814729;ETS1,2:-0.313605527535;SOX5:-0.338420643786;MEF2{A,B,C,D}:-0.341181544005;HMGA1,2:-0.364218399549;GATA6:-0.368729022941;ATF5_CREB3:-0.378446601929;TOPORS:-0.387047637754;PDX1:-0.405435892893;ELF1,2,4:-0.418358681837;NKX2-3_NKX2-5:-0.443997300584;NKX3-2:-0.453770763314;FOXM1:-0.47524260625;SPIB:-0.491916787337;SPI1:-0.515484960637;DMAP1_NCOR{1,2}_SMARC:-0.521597541972;BREu{core}:-0.52814545792;TLX2:-0.5334480593;FOX{D1,D2}:-0.552500064427;TGIF1:-0.564768988164;NKX2-2,8:-0.62585483668;FOXN1:-0.654182288855;TEF:-0.697405974094;RORA:-0.722388363201;FOX{F1,F2,J1}:-0.723708916418;CUX2:-0.765404531645;SNAI1..3:-0.796516149535;T:-0.809210557681;IRF1,2:-0.810759839084;ESRRA:-0.864986750955;BPTF:-0.865995998587;IRF7:-0.90991309453;ATF4:-0.945866715655;SREBF1,2:-0.954312029268;FOXP3:-0.954427951079;OCT4_SOX2{dimer}:-0.961228042851;ZEB1:-0.993734535604;NKX2-1,4:-1.0043313653;STAT1,3:-1.01578054532;FOXA2:-1.04645223295;FOXO1,3,4:-1.0633400036;AIRE:-1.10133441986;RFX2..5_RFXANK_RFXAP:-1.20329362474;MYOD1:-1.23711814837;ZBTB16:-1.25225956272;PITX1..3:-1.32163801386;IKZF2:-1.48158612156;FOXP1:-1.50712457951;PAX4:-1.5515525447;FOXD3:-1.5558892206;RBPJ:-1.75417978175;CDX1,2,4:-1.81413989232 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11289-117A2;search_select_hide=table117:FF:11289-117A2 | |||
}} | }} | ||
Latest revision as of 16:31, 3 June 2020
| Name: | Smooth Muscle Cells - Subclavian Artery, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11090 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11090
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11090
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.158 |
| 10 | 10 | 0.0834 |
| 100 | 100 | 0.335 |
| 101 | 101 | 0.0533 |
| 102 | 102 | 0.767 |
| 103 | 103 | 0.86 |
| 104 | 104 | 0.263 |
| 105 | 105 | 0.973 |
| 106 | 106 | 0.961 |
| 107 | 107 | 0.652 |
| 108 | 108 | 0.866 |
| 109 | 109 | 0.8 |
| 11 | 11 | 0.874 |
| 110 | 110 | 0.924 |
| 111 | 111 | 0.028 |
| 112 | 112 | 0.399 |
| 113 | 113 | 0.0569 |
| 114 | 114 | 0.976 |
| 115 | 115 | 0.485 |
| 116 | 116 | 0.115 |
| 117 | 117 | 0.334 |
| 118 | 118 | 0.368 |
| 119 | 119 | 0.433 |
| 12 | 12 | 0.727 |
| 120 | 120 | 0.968 |
| 121 | 121 | 0.357 |
| 122 | 122 | 0.925 |
| 123 | 123 | 0.00132 |
| 124 | 124 | 0.682 |
| 125 | 125 | 0.608 |
| 126 | 126 | 0.433 |
| 127 | 127 | 0.621 |
| 128 | 128 | 0.674 |
| 129 | 129 | 0.832 |
| 13 | 13 | 0.0786 |
| 130 | 130 | 0.0236 |
| 131 | 131 | 0.36 |
| 132 | 132 | 0.913 |
| 133 | 133 | 0.344 |
| 134 | 134 | 0.696 |
| 135 | 135 | 0.844 |
| 136 | 136 | 0.817 |
| 137 | 137 | 0.483 |
| 138 | 138 | 0.321 |
| 139 | 139 | 0.827 |
| 14 | 14 | 0.312 |
| 140 | 140 | 0.0863 |
| 141 | 141 | 0.00673 |
| 142 | 142 | 0.974 |
| 143 | 143 | 0.126 |
| 144 | 144 | 0.964 |
| 145 | 145 | 0.367 |
| 146 | 146 | 0.113 |
| 147 | 147 | 0.23 |
| 148 | 148 | 0.116 |
| 149 | 149 | 0.635 |
| 15 | 15 | 0.279 |
| 150 | 150 | 0.442 |
| 151 | 151 | 0.835 |
| 152 | 152 | 0.0204 |
| 153 | 153 | 0.489 |
| 154 | 154 | 0.481 |
| 155 | 155 | 0.59 |
| 156 | 156 | 0.75 |
| 157 | 157 | 0.88 |
| 158 | 158 | 0.023 |
| 159 | 159 | 0.346 |
| 16 | 16 | 0.533 |
| 160 | 160 | 0.821 |
| 161 | 161 | 0.954 |
| 162 | 162 | 0.352 |
| 163 | 163 | 0.839 |
| 164 | 164 | 0.638 |
| 165 | 165 | 0.312 |
| 166 | 166 | 0.813 |
| 167 | 167 | 0.305 |
| 168 | 168 | 0.399 |
| 169 | 169 | 0.2 |
| 17 | 17 | 0.63 |
| 18 | 18 | 0.515 |
| 19 | 19 | 0.605 |
| 2 | 2 | 0.436 |
| 20 | 20 | 0.249 |
| 21 | 21 | 0.532 |
| 22 | 22 | 0.369 |
| 23 | 23 | 0.424 |
| 24 | 24 | 0.542 |
| 25 | 25 | 0.179 |
| 26 | 26 | 0.246 |
| 27 | 27 | 0.788 |
| 28 | 28 | 0.0595 |
| 29 | 29 | 0.257 |
| 3 | 3 | 0.544 |
| 30 | 30 | 0.217 |
| 31 | 31 | 0.919 |
| 32 | 32 | 6.66898e-6 |
| 33 | 33 | 0.817 |
| 34 | 34 | 0.358 |
| 35 | 35 | 0.454 |
| 36 | 36 | 0.0563 |
| 37 | 37 | 0.977 |
| 38 | 38 | 0.708 |
| 39 | 39 | 0.225 |
| 4 | 4 | 0.903 |
| 40 | 40 | 0.983 |
| 41 | 41 | 0.418 |
| 42 | 42 | 0.926 |
| 43 | 43 | 0.649 |
| 44 | 44 | 0.337 |
| 45 | 45 | 0.618 |
| 46 | 46 | 0.618 |
| 47 | 47 | 0.519 |
| 48 | 48 | 0.85 |
| 49 | 49 | 0.0622 |
| 5 | 5 | 0.657 |
| 50 | 50 | 0.592 |
| 51 | 51 | 0.7 |
| 52 | 52 | 0.525 |
| 53 | 53 | 0.0577 |
| 54 | 54 | 0.614 |
| 55 | 55 | 0.686 |
| 56 | 56 | 0.699 |
| 57 | 57 | 0.641 |
| 58 | 58 | 0.193 |
| 59 | 59 | 0.596 |
| 6 | 6 | 0.883 |
| 60 | 60 | 0.17 |
| 61 | 61 | 0.289 |
| 62 | 62 | 0.237 |
| 63 | 63 | 0.963 |
| 64 | 64 | 0.717 |
| 65 | 65 | 0.717 |
| 66 | 66 | 0.39 |
| 67 | 67 | 0.808 |
| 68 | 68 | 0.00748 |
| 69 | 69 | 0.321 |
| 7 | 7 | 0.269 |
| 70 | 70 | 0.422 |
| 71 | 71 | 0.85 |
| 72 | 72 | 0.658 |
| 73 | 73 | 0.0207 |
| 74 | 74 | 0.843 |
| 75 | 75 | 0.709 |
| 76 | 76 | 0.236 |
| 77 | 77 | 0.379 |
| 78 | 78 | 0.202 |
| 79 | 79 | 0.309 |
| 8 | 8 | 0.803 |
| 80 | 80 | 0.734 |
| 81 | 81 | 0.546 |
| 82 | 82 | 0.301 |
| 83 | 83 | 0.586 |
| 84 | 84 | 0.463 |
| 85 | 85 | 0.984 |
| 86 | 86 | 0.63 |
| 87 | 87 | 0.0831 |
| 88 | 88 | 0.111 |
| 89 | 89 | 0.544 |
| 9 | 9 | 0.378 |
| 90 | 90 | 0.213 |
| 91 | 91 | 0.888 |
| 92 | 92 | 0.175 |
| 93 | 93 | 0.661 |
| 94 | 94 | 0.523 |
| 95 | 95 | 0.492 |
| 96 | 96 | 0.596 |
| 97 | 97 | 0.365 |
| 98 | 98 | 0.612 |
| 99 | 99 | 0.0122 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11090
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000175 human smooth muscle cell of subclavian artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002595 (smooth muscle cell of the subclavian artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0004573 (systemic artery)
0003834 (thoracic segment blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0003513 (trunk blood vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001533 (subclavian artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0000915 (thoracic segment of trunk)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000175 (human smooth muscle cell of subclavian artery sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
