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{{f5samples
{{f5samples
|id=FF:11352-117H2
|DRA_sample_Accession=CAGE@SAMD00005458
|name=Neural stem cells, donor2
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005458
|sample_id=11352
|accession_numbers=CAGE;DRX008374;DRR009246;DRZ000671;DRZ002056;DRZ012021;DRZ013406
|rna_tube_id=117H2
|accession_numbers_RNASeq=sRNA-Seq;DRX037243;DRR041609;DRZ007251
|rna_box=117
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004121,UBERON:0011216,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016
|rna_position=H2
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000047,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002371,CL:0002319,CL:0000255,CL:0000034
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Cell Applications
|rna_lot_number=2649
|rna_catalog_number=custom
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=18 weeks old fetus
|sample_tissue=brain
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=embryo 18week
|sample_ethnicity=U
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=neural stem cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10
|rna_concentration=1
|sample_note=
|profile_hcage=CNhs11384,LSID771,release012,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10014,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000047,CL:0000048,CL:0000133,CL:0000144,CL:0000220,CL:0000221,CL:0000255,CL:0000548,CL:0000723,CL:0002319,CL:0002321,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000073,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0001016,UBERON:0001017,UBERON:0001062,UBERON:0002050,UBERON:0002532,UBERON:0004121,UBERON:0005423,UBERON:0005743
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000120
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr14:29235961..29236008,+!p1@FOXG1!2.55!357.88!FOXG1;;chr17:37764128..37764258,-!p1@NEUROD2!2.47!294.12!NEUROD2;;chr7:31380292..31380351,-!p1@NEUROD6!2.38!238.16!NEUROD6;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.37!232.95!POU3F3;;chrX:25034067..25034088,-!p1@ARX!2.17!148.36!ARX;;chr14:29236269..29236285,+!p3@FOXG1!2.10!123.63!FOXG1;;chr14:29236301..29236317,+!p5@FOXG1!2.10!123.63!FOXG1;;chr2:162272785..162272836,+!p1@TBR1!2.04!108.02!TBR1;;chr1:244214577..244214593,+!p1@ZNF238!2.01!101.51!ZNF238;;chr1:151032922..151032951,+!p2@MLLT11!1.98!152.26!MLLT11;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.95!88.50!POU3F3;;chr3:181429704..181429722,+!p1@SOX2!1.95!87.19!SOX2;;chr2:200322229..200322251,-!p3@SATB2!1.94!85.89!SATB2;;chr14:29234581..29234601,+!p2@FOXG1!1.94!85.89!FOXG1;;chr19:13134772..13134822,+!p2@NFIX!1.92!118.43!NFIX;;chr7:100065686..100065701,-!p2@TSC22D4!1.91!79.39!TSC22D4;;chr4:81118647..81118666,+!p1@PRDM8!1.86!93.70!PRDM8;;chr2:162272889..162272915,+!p2@TBR1!1.84!68.97!TBR1;;chr16:51185172..51185197,-!p1@SALL1!1.82!65.07!SALL1;;chr9:126774018..126774055,+!p1@LHX2!1.81!63.77!LHX2;;chr4:113437332..113437337,-!p1@NEUROG2!1.79!61.17!NEUROG2;;chr4:57547454..57547469,-!p1@HOPX!1.78!59.86!HOPX;;chr20:20348740..20348757,+!p1@INSM1!1.78!59.86!INSM1;;chr3:181429741..181429767,+!p2@SOX2!1.77!57.26!SOX2;;chr14:33403881..33403924,+!p1@NPAS3!1.72!52.06!NPAS3;;chr11:31832658..31832681,-!p1@PAX6!1.70!49.45!PAX6;;chr2:200322723..200322739,-!p6@SATB2!1.70!49.45!SATB2;;chr2:5832508..5832524,+!p1@SOX11!1.67!45.55!SOX11;;chr9:14308004..14308041,-!p14@NFIB!1.67!45.55!NFIB;;chr2:16080659..16080685,+!p1@MYCN!1.66!44.25!MYCN;;chr9:126773880..126773895,+!p2@LHX2!1.64!42.95!LHX2;;chr1:151032860..151032918,+!p1@MLLT11!1.63!472.41!MLLT11;;chr2:166326200..166326216,+!p1@CSRNP3!1.63!59.86!CSRNP3;;chr2:2334997..2335053,-!p1@MYT1L!1.62!40.34!MYT1L;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.62!40.34!PEG3;;chr12:103351444..103351461,+!p1@ASCL1!1.60!39.04!ASCL1;;chr5:88178983..88179012,-!p1@MEF2C!1.58!271.99!MEF2C;;chr7:96654133..96654150,-!p1@DLX5!1.57!36.44!DLX5;;chr2:182545234..182545252,-!p1@NEUROD1!1.57!36.44!NEUROD1;;chrX:84498989..84499003,+!p1@ZNF711!1.56!48.15!ZNF711;;chr2:172967621..172967637,-!p1@DLX2!1.54!87.19!DLX2;;chr9:126774058..126774081,+!p3@LHX2!1.54!33.84!LHX2;;chr19:38720294..38720348,-!p1@DPF1!1.51!39.04!DPF1;;chr8:40755333..40755352,-!p1@ZMAT4!1.51!31.23!ZMAT4;;chr11:31832862..31832884,-!p2@PAX6!1.49!29.93!PAX6;;chr12:24102576..24102623,-!p2@SOX5!1.49!29.93!SOX5;;chr14:73360799..73360817,-!p1@DPF3!1.48!97.60!DPF3;;chr9:77112244..77112262,+!p1@RORB!1.48!32.53!RORB;;chrX:82763292..82763317,+!p1@POU3F4!1.47!28.63!POU3F4;;chr14:29237009..29237049,+!p4@FOXG1!1.47!28.63!FOXG1;;chr6:21594206..21594221,+!p15@SOX4!1.47!28.63!SOX4;;chr19:13135582..13135600,+!p3@NFIX!1.45!27.33!NFIX;;chr2:166428839..166428859,+!p2@CSRNP3!1.45!27.33!CSRNP3;;chr2:5832493..5832507,+!p2@SOX11!1.45!27.33!SOX11;;chr9:14314131..14314147,-!p2@NFIB!1.44!144.46!NFIB;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!1.43!26.03!POU3F3;;chr2:200322259..200322280,-!p5@SATB2!1.43!26.03!SATB2;;chr1:151032957..151032968,+!p7@MLLT11!1.43!26.03!MLLT11;;chr6:99282592..99282616,+!p3@POU3F2!1.41!24.73!POU3F2;;chr2:200322654..200322707,-!p2@SATB2!1.40!35.14!SATB2;;chr17:70117153..70117174,+!p1@SOX9!1.39!235.55!SOX9;;chr18:56532100..56532130,+!p1@ZNF532!1.39!42.95!ZNF532;;chr1:214161272..214161322,+!p1@PROX1!1.39!32.53!PROX1;;chr15:80696703..80696754,+!p1@ARNT2!1.39!31.23!ARNT2;;chr2:145275982..145276003,-!p7@ZEB2!1.39!23.43!ZEB2;;chr13:72441315..72441454,-!p1@DACH1!1.36!42.95!DACH1;;chr1:2461692..2461710,-!p1@HES5!1.36!22.12!HES5;;chr2:2335109..2335134,-!p2@MYT1L!1.36!22.12!MYT1L;;chr6:19837592..19837621,+!p1@ID4!1.35!126.24!ID4;;chr5:178368186..178368238,+!p1@ZNF454!1.35!37.74!ZNF454;;chrX:84499081..84499115,+!p2@ZNF711!1.35!31.23!ZNF711;;chr15:57511609..57511651,+!p2@TCF12!1.34!35.14!TCF12;;chr18:53068911..53068935,-!p4@TCF4!1.34!23.43!TCF4;;chr2:63277948..63277974,+!p1@OTX1!1.34!20.82!OTX1;;chr1:244214611..244214624,+!p4@ZNF238!1.34!20.82!ZNF238;;chr9:109625401..109625458,+!p1@ZNF462!1.32!52.06!ZNF462;;chr1:23696348..23696363,-!p4@ZNF436!1.32!22.12!ZNF436;;chr14:58798013..58798071,+!p2@ARID4A!1.31!19.52!ARID4A;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!1.31!19.52!POU3F3;;chr2:200320768..200320800,-!p4@SATB2!1.31!19.52!SATB2;;chr15:37392724..37392757,-!p1@MEIS2!1.28!81.99!MEIS2;;chr9:14313893..14313908,-!p7@NFIB!1.28!26.03!NFIB;;chr2:162272716..162272753,+!p3@TBR1!1.28!18.22!TBR1;;chr18:53069419..53069450,-!p34@TCF4!1.28!18.22!TCF4;;chr2:145277882..145277967,-!p3@ZEB2!1.27!29.93!ZEB2;;chr2:63277978..63277995,+!p2@OTX1!1.25!16.92!OTX1;;chr8:65492756..65492768,+!p2@BHLHE22!1.25!16.92!BHLHE22;;chr18:53089453..53089482,-!p11@TCF4!1.25!16.92!TCF4;;chr10:119302232..119302265,+!p1@EMX2!1.25!16.92!EMX2;;chr3:141105705..141105770,+!p4@ZBTB38!1.23!19.52!ZBTB38;;chr2:166428861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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000047;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002319;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016
|ffid_belonging_in_development=CL:0000133,CL:0000221
|fonse_cell_line=
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|fonse_cell_line_closure=
Line 66: Line 43:
|fonse_treatment=
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|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor2.CNhs11384.11352-117H2.hg19.nobarcode.rdna.fa.gz
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|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neural%2520stem%2520cells%252c%2520donor2.CNhs11384.11352-117H2.hg38.nobarcode.ctss.bed.gz
|id=FF:11352-117H2
|is_a=EFO:0002091;;FF:0000120
|is_obsolete=
|library_id=CNhs11384
|library_id_phase_based=2:CNhs11384
|microRNAs=
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11352
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.GTTTCG.11352
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11352
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.GTTTCG.11352
|name=Neural stem cells, donor2
|namespace=FANTOM5
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|profile_hcage=CNhs11384,LSID771,release012,COMPLETED
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|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=117
|rna_catalog_number=custom
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=2649
|rna_od260/230=
|rna_od260/280=
|rna_position=H2
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=117H2
|rna_weight_ug=10
|rnaseq_library_id=SRhi10014.GTTTCG
|sample_age=embryo 18week
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=neural stem cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=18 weeks old fetus
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=U
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.37214964257319e-224!GO:0043226;organelle;2.8018477259432e-184!GO:0043229;intracellular organelle;1.54595646680265e-183!GO:0043227;membrane-bound organelle;1.5383418982945e-178!GO:0043231;intracellular membrane-bound organelle;1.5383418982945e-178!GO:0005737;cytoplasm;8.11277693024042e-124!GO:0044422;organelle part;7.93015208886131e-105!GO:0044446;intracellular organelle part;1.21955661030048e-103!GO:0005634;nucleus;1.75297846179965e-101!GO:0005515;protein binding;1.3628392455185e-79!GO:0043170;macromolecule metabolic process;1.7707067407021e-78!GO:0044238;primary metabolic process;1.72131896470637e-76!GO:0032991;macromolecular complex;3.16946197627685e-75!GO:0044237;cellular metabolic process;5.28576852381905e-73!GO:0044444;cytoplasmic part;5.14675000353744e-71!GO:0043283;biopolymer metabolic process;6.62162333011391e-66!GO:0016043;cellular component organization and biogenesis;2.4976600961104e-64!GO:0044428;nuclear part;1.82726070576525e-63!GO:0003723;RNA binding;1.69584798659292e-59!GO:0030529;ribonucleoprotein complex;2.40733491331201e-58!GO:0010467;gene expression;4.07855521730786e-56!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.84539587663958e-53!GO:0043233;organelle lumen;4.05684503782887e-52!GO:0031974;membrane-enclosed lumen;4.05684503782887e-52!GO:0033036;macromolecule localization;3.84242139610071e-42!GO:0006396;RNA processing;8.3887550536823e-42!GO:0015031;protein transport;1.91257163842716e-40!GO:0016071;mRNA metabolic process;3.13969286062803e-39!GO:0003676;nucleic acid binding;4.69392361165544e-39!GO:0043234;protein complex;5.42212829144443e-39!GO:0031981;nuclear lumen;4.04305956884164e-38!GO:0008104;protein localization;2.03446749243053e-37!GO:0008380;RNA splicing;1.55547203372617e-36!GO:0045184;establishment of protein localization;1.83788612188064e-36!GO:0016070;RNA metabolic process;3.59327246233308e-36!GO:0006996;organelle organization and biogenesis;4.17012166282389e-36!GO:0006397;mRNA processing;2.57011532186961e-34!GO:0046907;intracellular transport;9.97253254370413e-33!GO:0031090;organelle membrane;1.69609295582616e-31!GO:0043228;non-membrane-bound organelle;2.96942357154238e-29!GO:0043232;intracellular non-membrane-bound organelle;2.96942357154238e-29!GO:0019538;protein metabolic process;3.44879607462097e-29!GO:0005840;ribosome;2.80536374571781e-28!GO:0006259;DNA metabolic process;2.9400006017109e-28!GO:0005739;mitochondrion;4.4162122573466e-27!GO:0006886;intracellular protein transport;3.93657306261499e-26!GO:0065003;macromolecular complex assembly;6.2008055867922e-26!GO:0006412;translation;7.03960634571689e-26!GO:0051649;establishment of cellular localization;1.0220348611625e-25!GO:0044267;cellular protein metabolic process;1.27634881201744e-25!GO:0044260;cellular macromolecule metabolic process;1.69049976078104e-25!GO:0051641;cellular localization;2.22862564936558e-25!GO:0005654;nucleoplasm;3.32568970964312e-24!GO:0005681;spliceosome;8.19440105182089e-24!GO:0000166;nucleotide binding;8.65265705621363e-24!GO:0003735;structural constituent of ribosome;3.63077601798944e-23!GO:0022607;cellular component assembly;4.31468871436203e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.23003137922561e-21!GO:0031967;organelle envelope;2.78589466209223e-21!GO:0031975;envelope;3.14356079764533e-21!GO:0017111;nucleoside-triphosphatase activity;4.77409233185561e-21!GO:0044451;nucleoplasm part;1.8120342439899e-20!GO:0016462;pyrophosphatase activity;1.83975727496187e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.3394793597791e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;4.30016307246767e-20!GO:0005829;cytosol;5.3969392487874e-20!GO:0044429;mitochondrial part;7.72060729366439e-20!GO:0007049;cell cycle;1.83031266829283e-19!GO:0006512;ubiquitin cycle;3.42341786054679e-19!GO:0033279;ribosomal subunit;2.09293322165938e-18!GO:0051276;chromosome organization and biogenesis;5.29251840479936e-18!GO:0050794;regulation of cellular process;9.68836057601263e-18!GO:0009059;macromolecule biosynthetic process;1.45026639493456e-17!GO:0008134;transcription factor binding;3.50191771147678e-17!GO:0016874;ligase activity;1.09378029423331e-16!GO:0032553;ribonucleotide binding;2.18759641561105e-16!GO:0032555;purine ribonucleotide binding;2.18759641561105e-16!GO:0016192;vesicle-mediated transport;4.37838082850354e-16!GO:0006325;establishment and/or maintenance of chromatin architecture;5.53425497369675e-16!GO:0006119;oxidative phosphorylation;5.53425497369675e-16!GO:0005794;Golgi apparatus;1.0734771604743e-15!GO:0009058;biosynthetic process;1.26926263911495e-15!GO:0019222;regulation of metabolic process;3.29054898429313e-15!GO:0050789;regulation of biological process;3.58365892588541e-15!GO:0022618;protein-RNA complex assembly;3.86128567920693e-15!GO:0006323;DNA packaging;3.99118482361227e-15!GO:0043412;biopolymer modification;5.5803616804631e-15!GO:0044249;cellular biosynthetic process;5.70740012540646e-15!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.92794132263159e-15!GO:0017076;purine nucleotide binding;1.11069274653738e-14!GO:0012505;endomembrane system;1.28746213051108e-14!GO:0006974;response to DNA damage stimulus;1.77728120891591e-14!GO:0005694;chromosome;2.12249528269207e-14!GO:0008135;translation factor activity, nucleic acid binding;5.31766239817971e-14!GO:0048770;pigment granule;1.50405814250007e-13!GO:0042470;melanosome;1.50405814250007e-13!GO:0006511;ubiquitin-dependent protein catabolic process;2.38148983624423e-13!GO:0006464;protein modification process;2.45701769769222e-13!GO:0022402;cell cycle process;2.86020120568017e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;3.09618088137408e-13!GO:0019941;modification-dependent protein catabolic process;3.91852378895442e-13!GO:0043632;modification-dependent macromolecule catabolic process;3.91852378895442e-13!GO:0043687;post-translational protein modification;4.16112384053053e-13!GO:0005730;nucleolus;4.19189221963901e-13!GO:0015630;microtubule cytoskeleton;4.26118603825379e-13!GO:0006350;transcription;5.15288434662944e-13!GO:0044445;cytosolic part;6.27095463369051e-13!GO:0044257;cellular protein catabolic process;6.27095463369051e-13!GO:0000278;mitotic cell cycle;6.82476521604898e-13!GO:0048193;Golgi vesicle transport;1.31357395339898e-12!GO:0006605;protein targeting;1.47723850922032e-12!GO:0019866;organelle inner membrane;1.89175896320855e-12!GO:0005740;mitochondrial envelope;2.05641500421213e-12!GO:0044427;chromosomal part;2.49715995368702e-12!GO:0006457;protein folding;3.37537776868335e-12!GO:0031323;regulation of cellular metabolic process;4.0432178338882e-12!GO:0031966;mitochondrial membrane;6.563221112529e-12!GO:0044265;cellular macromolecule catabolic process;8.15248449223865e-12!GO:0006281;DNA repair;8.90529143326479e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.03176275713804e-11!GO:0000375;RNA splicing, via transesterification reactions;1.03176275713804e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.03176275713804e-11!GO:0005524;ATP binding;1.13045018754184e-11!GO:0032559;adenyl ribonucleotide binding;1.63554774364458e-11!GO:0010468;regulation of gene expression;1.97838216390231e-11!GO:0006366;transcription from RNA polymerase II promoter;2.97397210743403e-11!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.5154496918682e-11!GO:0032774;RNA biosynthetic process;3.79606540700001e-11!GO:0006351;transcription, DNA-dependent;4.33175668507217e-11!GO:0043285;biopolymer catabolic process;4.35827631324207e-11!GO:0031965;nuclear membrane;4.37811689528748e-11!GO:0005743;mitochondrial inner membrane;4.66571500241695e-11!GO:0003712;transcription cofactor activity;6.66924903101441e-11!GO:0000502;proteasome complex (sensu Eukaryota);6.9788208232182e-11!GO:0006913;nucleocytoplasmic transport;9.44632942372572e-11!GO:0016887;ATPase activity;1.53083664223422e-10!GO:0042623;ATPase activity, coupled;1.68110232687786e-10!GO:0030163;protein catabolic process;1.68110232687786e-10!GO:0006403;RNA localization;1.88071778150621e-10!GO:0051169;nuclear transport;1.95050384540598e-10!GO:0044455;mitochondrial membrane part;1.96814290248154e-10!GO:0016604;nuclear body;2.26738309523336e-10!GO:0004386;helicase activity;3.12245500187412e-10!GO:0003743;translation initiation factor activity;3.46643294559866e-10!GO:0050657;nucleic acid transport;4.09138173455307e-10!GO:0051236;establishment of RNA localization;4.09138173455307e-10!GO:0050658;RNA transport;4.09138173455307e-10!GO:0015935;small ribosomal subunit;4.09138173455307e-10!GO:0006333;chromatin assembly or disassembly;4.09514274945906e-10!GO:0044453;nuclear membrane part;4.10878717871247e-10!GO:0008639;small protein conjugating enzyme activity;4.48902006303989e-10!GO:0006446;regulation of translational initiation;4.69127444733248e-10!GO:0006413;translational initiation;5.3390136118917e-10!GO:0005635;nuclear envelope;6.17199080100098e-10!GO:0030554;adenyl nucleotide binding;6.32400506017343e-10!GO:0004842;ubiquitin-protein ligase activity;7.05891230328313e-10!GO:0000087;M phase of mitotic cell cycle;7.64058937758057e-10!GO:0045449;regulation of transcription;7.88205451069015e-10!GO:0019787;small conjugating protein ligase activity;1.14319227828323e-09!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.30559389490875e-09!GO:0016607;nuclear speck;1.41448663943656e-09!GO:0007067;mitosis;1.54965197965318e-09!GO:0051301;cell division;1.63113880797795e-09!GO:0031980;mitochondrial lumen;1.69848390102539e-09!GO:0005759;mitochondrial matrix;1.69848390102539e-09!GO:0003924;GTPase activity;1.78619521283856e-09!GO:0009057;macromolecule catabolic process;1.99123090462023e-09!GO:0005746;mitochondrial respiratory chain;2.11786644753341e-09!GO:0065007;biological regulation;2.34816918890487e-09!GO:0016568;chromatin modification;2.39884322968612e-09!GO:0050136;NADH dehydrogenase (quinone) activity;2.82211819752444e-09!GO:0003954;NADH dehydrogenase activity;2.82211819752444e-09!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.82211819752444e-09!GO:0031988;membrane-bound vesicle;3.30022626727819e-09!GO:0009719;response to endogenous stimulus;3.52482173833282e-09!GO:0006355;regulation of transcription, DNA-dependent;3.81749740441618e-09!GO:0015934;large ribosomal subunit;3.81749740441618e-09!GO:0008565;protein transporter activity;3.82849903933668e-09!GO:0051082;unfolded protein binding;4.75105738678771e-09!GO:0005643;nuclear pore;4.94713525127498e-09!GO:0022403;cell cycle phase;6.58649169811101e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.5666058622895e-09!GO:0016023;cytoplasmic membrane-bound vesicle;8.19048397550736e-09!GO:0000785;chromatin;1.45829020412824e-08!GO:0006260;DNA replication;1.59303642550437e-08!GO:0031982;vesicle;1.71222442280812e-08!GO:0042775;organelle ATP synthesis coupled electron transport;3.10188183844958e-08!GO:0042773;ATP synthesis coupled electron transport;3.10188183844958e-08!GO:0065004;protein-DNA complex assembly;3.43878468156826e-08!GO:0044431;Golgi apparatus part;3.57921352169463e-08!GO:0016881;acid-amino acid ligase activity;3.77862399514443e-08!GO:0051028;mRNA transport;4.06618363774899e-08!GO:0031410;cytoplasmic vesicle;4.17439890828193e-08!GO:0008026;ATP-dependent helicase activity;4.6220888408832e-08!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.75224609305684e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.87614874603904e-08!GO:0031252;leading edge;6.2093172341037e-08!GO:0007010;cytoskeleton organization and biogenesis;6.2442528961635e-08!GO:0019829;cation-transporting ATPase activity;6.25093627087858e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.53126632559321e-08!GO:0030964;NADH dehydrogenase complex (quinone);9.39316771992194e-08!GO:0045271;respiratory chain complex I;9.39316771992194e-08!GO:0005747;mitochondrial respiratory chain complex I;9.39316771992194e-08!GO:0051726;regulation of cell cycle;1.1315255833933e-07!GO:0000074;regulation of progression through cell cycle;1.31399944335649e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.37127729541017e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.4494732501278e-07!GO:0048523;negative regulation of cellular process;2.27678869305254e-07!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.61077040435054e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.81796338191207e-07!GO:0003677;DNA binding;2.90081137737299e-07!GO:0005525;GTP binding;2.92398833170833e-07!GO:0015986;ATP synthesis coupled proton transport;2.94701880082915e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.94701880082915e-07!GO:0006793;phosphorus metabolic process;3.26000620363807e-07!GO:0006796;phosphate metabolic process;3.26000620363807e-07!GO:0017038;protein import;3.28518853116135e-07!GO:0005761;mitochondrial ribosome;4.43780602440768e-07!GO:0000313;organellar ribosome;4.43780602440768e-07!GO:0009259;ribonucleotide metabolic process;4.59374598452863e-07!GO:0006163;purine nucleotide metabolic process;6.31608295117623e-07!GO:0042254;ribosome biogenesis and assembly;6.38210637816733e-07!GO:0000279;M phase;8.21281841946691e-07!GO:0009150;purine ribonucleotide metabolic process;9.19946343879193e-07!GO:0006461;protein complex assembly;1.00901811134134e-06!GO:0065002;intracellular protein transport across a membrane;1.03176049247245e-06!GO:0045045;secretory pathway;1.04595149567225e-06!GO:0048475;coated membrane;1.05707864006024e-06!GO:0030117;membrane coat;1.05707864006024e-06!GO:0009060;aerobic respiration;1.13406435045737e-06!GO:0032446;protein modification by small protein conjugation;1.21790392583152e-06!GO:0044248;cellular catabolic process;1.30063050859273e-06!GO:0051186;cofactor metabolic process;1.34174375633063e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.41333843843336e-06!GO:0005874;microtubule;1.51807241895538e-06!GO:0046930;pore complex;1.59397933747708e-06!GO:0006164;purine nucleotide biosynthetic process;1.6018577805511e-06!GO:0043566;structure-specific DNA binding;1.68987953467649e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.80019017385722e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.80019017385722e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.99724101569944e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.99724101569944e-06!GO:0009260;ribonucleotide biosynthetic process;2.17930486511729e-06!GO:0009152;purine ribonucleotide biosynthetic process;2.28099661668073e-06!GO:0005768;endosome;2.29897924354642e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.37938166993334e-06!GO:0009141;nucleoside triphosphate metabolic process;2.38815784443027e-06!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.43919640485809e-06!GO:0032561;guanyl ribonucleotide binding;2.4719750402291e-06!GO:0019001;guanyl nucleotide binding;2.4719750402291e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.51188458758344e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.51188458758344e-06!GO:0006334;nucleosome assembly;2.71386392313634e-06!GO:0045333;cellular respiration;2.7701653692417e-06!GO:0005783;endoplasmic reticulum;3.23061079592633e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.33633349135858e-06!GO:0016567;protein ubiquitination;3.35978976174179e-06!GO:0000139;Golgi membrane;3.42563815062118e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.49697950604488e-06!GO:0006754;ATP biosynthetic process;4.21317492677848e-06!GO:0006753;nucleoside phosphate metabolic process;4.21317492677848e-06!GO:0046034;ATP metabolic process;4.29025071337082e-06!GO:0000902;cell morphogenesis;4.60147686430274e-06!GO:0032989;cellular structure morphogenesis;4.60147686430274e-06!GO:0016363;nuclear matrix;4.77096183174372e-06!GO:0008270;zinc ion binding;4.91357265823385e-06!GO:0003713;transcription coactivator activity;4.93781735129057e-06!GO:0016310;phosphorylation;5.34345455198576e-06!GO:0003729;mRNA binding;5.35322925246546e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.42937059393728e-06!GO:0015631;tubulin binding;5.6062858715587e-06!GO:0031497;chromatin assembly;5.7382896882694e-06!GO:0016564;transcription repressor activity;5.81249354078957e-06!GO:0007017;microtubule-based process;6.50784213588592e-06!GO:0003697;single-stranded DNA binding;6.50784213588592e-06!GO:0031324;negative regulation of cellular metabolic process;6.65676791011466e-06!GO:0005813;centrosome;7.91789186102177e-06!GO:0009892;negative regulation of metabolic process;8.93879591885946e-06!GO:0048519;negative regulation of biological process;1.06802176666942e-05!GO:0044432;endoplasmic reticulum part;1.13548251871079e-05!GO:0008092;cytoskeletal protein binding;1.55800406777244e-05!GO:0000245;spliceosome assembly;1.57788654925866e-05!GO:0030120;vesicle coat;1.67452448222081e-05!GO:0030662;coated vesicle membrane;1.67452448222081e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.86810500756592e-05!GO:0006613;cotranslational protein targeting to membrane;1.88470363627672e-05!GO:0006732;coenzyme metabolic process;2.08263019479753e-05!GO:0003682;chromatin binding;2.38595590757397e-05!GO:0019899;enzyme binding;2.38891182615906e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.54939736789431e-05!GO:0004812;aminoacyl-tRNA ligase activity;2.54939736789431e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.54939736789431e-05!GO:0003724;RNA helicase activity;2.59029365352537e-05!GO:0051170;nuclear import;2.62004147205989e-05!GO:0030532;small nuclear ribonucleoprotein complex;2.75427784568305e-05!GO:0006606;protein import into nucleus;2.79669750554921e-05!GO:0051427;hormone receptor binding;2.81613291590418e-05!GO:0016481;negative regulation of transcription;2.86268115073678e-05!GO:0005815;microtubule organizing center;2.88804237835081e-05!GO:0003714;transcription corepressor activity;2.90531306955899e-05!GO:0005793;ER-Golgi intermediate compartment;3.45307072244075e-05!GO:0006099;tricarboxylic acid cycle;3.6335161636152e-05!GO:0046356;acetyl-CoA catabolic process;3.6335161636152e-05!GO:0044440;endosomal part;3.6335161636152e-05!GO:0010008;endosome membrane;3.6335161636152e-05!GO:0007399;nervous system development;3.76841973668021e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.98345085806952e-05!GO:0006399;tRNA metabolic process;4.39657506987152e-05!GO:0043038;amino acid activation;4.67722942398411e-05!GO:0006418;tRNA aminoacylation for protein translation;4.67722942398411e-05!GO:0043039;tRNA aminoacylation;4.67722942398411e-05!GO:0006084;acetyl-CoA metabolic process;4.94649792234449e-05!GO:0015078;hydrogen ion transmembrane transporter activity;5.630177616367e-05!GO:0035257;nuclear hormone receptor binding;5.65217909968237e-05!GO:0045259;proton-transporting ATP synthase complex;6.23167635250592e-05!GO:0048471;perinuclear region of cytoplasm;6.85507670548622e-05!GO:0005798;Golgi-associated vesicle;7.34325043950024e-05!GO:0030027;lamellipodium;8.58483023568838e-05!GO:0005667;transcription factor complex;8.97997255820726e-05!GO:0051168;nuclear export;9.62034804668634e-05!GO:0005905;coated pit;0.000106042250706189!GO:0045786;negative regulation of progression through cell cycle;0.000110575346721061!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000143374243027336!GO:0051329;interphase of mitotic cell cycle;0.00019000071869228!GO:0006752;group transfer coenzyme metabolic process;0.00019550100324789!GO:0016563;transcription activator activity;0.000223642851976884!GO:0006364;rRNA processing;0.000231002840960374!GO:0007264;small GTPase mediated signal transduction;0.000232193224585154!GO:0005819;spindle;0.000243964779906243!GO:0009109;coenzyme catabolic process;0.000248461129885975!GO:0016044;membrane organization and biogenesis;0.000252015408565308!GO:0005875;microtubule associated complex;0.00025356691876535!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000270885924114456!GO:0051246;regulation of protein metabolic process;0.000273122180802174!GO:0043623;cellular protein complex assembly;0.000298135705534807!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000302379514077739!GO:0032940;secretion by cell;0.000316992772906377!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000325374063929127!GO:0016072;rRNA metabolic process;0.000378223914928356!GO:0005769;early endosome;0.00039382527214087!GO:0051188;cofactor biosynthetic process;0.000485648625686599!GO:0008017;microtubule binding;0.000501927417417134!GO:0051128;regulation of cellular component organization and biogenesis;0.000509779341701405!GO:0000151;ubiquitin ligase complex;0.000517384724564249!GO:0005789;endoplasmic reticulum membrane;0.000527031734705698!GO:0051325;interphase;0.000562006743199394!GO:0051187;cofactor catabolic process;0.000563909900485164!GO:0030036;actin cytoskeleton organization and biogenesis;0.000622532199647872!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000646287638411553!GO:0006891;intra-Golgi vesicle-mediated transport;0.000652556968958733!GO:0031124;mRNA 3'-end processing;0.000654524372407465!GO:0008186;RNA-dependent ATPase activity;0.0006937220398629!GO:0000776;kinetochore;0.000744331414359586!GO:0001726;ruffle;0.000748700656487583!GO:0008361;regulation of cell size;0.000785280951248028!GO:0003690;double-stranded DNA binding;0.000788493190430748!GO:0043069;negative regulation of programmed cell death;0.000806292301470703!GO:0005770;late endosome;0.000843322839665831!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000904927739543547!GO:0043066;negative regulation of apoptosis;0.00107430829403868!GO:0005839;proteasome core complex (sensu Eukaryota);0.00112242105892947!GO:0050767;regulation of neurogenesis;0.00117767005847938!GO:0008287;protein serine/threonine phosphatase complex;0.00125631767671156!GO:0007051;spindle organization and biogenesis;0.00134446835611044!GO:0004674;protein serine/threonine kinase activity;0.00141139070184598!GO:0045892;negative regulation of transcription, DNA-dependent;0.00147670222933448!GO:0051087;chaperone binding;0.00156716458677023!GO:0045893;positive regulation of transcription, DNA-dependent;0.00161054291135126!GO:0016049;cell growth;0.00164299388361736!GO:0012501;programmed cell death;0.0016981766261419!GO:0046914;transition metal ion binding;0.00172738125733313!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00172738125733313!GO:0015399;primary active transmembrane transporter activity;0.00172738125733313!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00178444716733257!GO:0006405;RNA export from nucleus;0.0018139323648001!GO:0006414;translational elongation;0.00190582130563297!GO:0030521;androgen receptor signaling pathway;0.00192538748353099!GO:0006916;anti-apoptosis;0.0019386055124516!GO:0004004;ATP-dependent RNA helicase activity;0.00196785267855439!GO:0009056;catabolic process;0.00211492922707995!GO:0005657;replication fork;0.00211538264503012!GO:0000075;cell cycle checkpoint;0.00211569714572249!GO:0000775;chromosome, pericentric region;0.00215936311476575!GO:0006261;DNA-dependent DNA replication;0.00221130325277275!GO:0030137;COPI-coated vesicle;0.00222374138570615!GO:0006612;protein targeting to membrane;0.00228956627753473!GO:0006915;apoptosis;0.00249495005613742!GO:0008219;cell death;0.00277017543243137!GO:0016265;death;0.00277017543243137!GO:0009108;coenzyme biosynthetic process;0.0029472809379313!GO:0031901;early endosome membrane;0.00314610894527858!GO:0031123;RNA 3'-end processing;0.00319708197235426!GO:0030029;actin filament-based process;0.00319708197235426!GO:0000904;cellular morphogenesis during differentiation;0.00332492700639754!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00338122856345208!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00343834633295826!GO:0016585;chromatin remodeling complex;0.00351025340473485!GO:0009055;electron carrier activity;0.00351325990021339!GO:0008654;phospholipid biosynthetic process;0.00352273652573774!GO:0006402;mRNA catabolic process;0.00362148195117786!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00371122852038766!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00371705273596497!GO:0000209;protein polyubiquitination;0.00380208982911259!GO:0043021;ribonucleoprotein binding;0.00391511647509772!GO:0004298;threonine endopeptidase activity;0.00400885200949521!GO:0007005;mitochondrion organization and biogenesis;0.00404585430088216!GO:0001558;regulation of cell growth;0.00425245973217203!GO:0008250;oligosaccharyl transferase complex;0.00431983809700992!GO:0030118;clathrin coat;0.00432317735634488!GO:0016740;transferase activity;0.00460779135777522!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00462786485400002!GO:0000059;protein import into nucleus, docking;0.00466418304529935!GO:0005048;signal sequence binding;0.00466418304529935!GO:0022406;membrane docking;0.00466418304529935!GO:0048278;vesicle docking;0.00466418304529935!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00466418304529935!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00466418304529935!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00466418304529935!GO:0016126;sterol biosynthetic process;0.00466418304529935!GO:0051252;regulation of RNA metabolic process;0.00475492165452462!GO:0007050;cell cycle arrest;0.00497084419891511!GO:0048500;signal recognition particle;0.00512562689970206!GO:0030030;cell projection organization and biogenesis;0.00530039732290005!GO:0048858;cell projection morphogenesis;0.00530039732290005!GO:0032990;cell part morphogenesis;0.00530039732290005!GO:0005869;dynactin complex;0.00538528851094842!GO:0045941;positive regulation of transcription;0.00547174133720333!GO:0030867;rough endoplasmic reticulum membrane;0.00553638104612829!GO:0007052;mitotic spindle organization and biogenesis;0.00556071114747384!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00581855475962531!GO:0003711;transcription elongation regulator activity;0.00600159869761401!GO:0048468;cell development;0.00602504589794024!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00623949702276637!GO:0030133;transport vesicle;0.00628829515160282!GO:0019887;protein kinase regulator activity;0.00628829515160282!GO:0016197;endosome transport;0.00628829515160282!GO:0048667;neuron morphogenesis during differentiation;0.00631584622316684!GO:0048812;neurite morphogenesis;0.00631584622316684!GO:0035258;steroid hormone receptor binding;0.00634989056953632!GO:0006897;endocytosis;0.00636334995266842!GO:0010324;membrane invagination;0.00636334995266842!GO:0008139;nuclear localization sequence binding;0.0063910960714765!GO:0006338;chromatin remodeling;0.00641529513587469!GO:0022008;neurogenesis;0.0064305637326652!GO:0003746;translation elongation factor activity;0.00655789290185574!GO:0030663;COPI coated vesicle membrane;0.00661312565532191!GO:0030126;COPI vesicle coat;0.00661312565532191!GO:0043492;ATPase activity, coupled to movement of substances;0.00665525712904308!GO:0030182;neuron differentiation;0.00673700794215113!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00705770921405595!GO:0045047;protein targeting to ER;0.00705770921405595!GO:0016311;dephosphorylation;0.00705770921405595!GO:0051920;peroxiredoxin activity;0.00714240824658836!GO:0008601;protein phosphatase type 2A regulator activity;0.00715588557782202!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00726410062454755!GO:0007059;chromosome segregation;0.00727246430753388!GO:0006607;NLS-bearing substrate import into nucleus;0.00727901654786476!GO:0003678;DNA helicase activity;0.00730831421790132!GO:0004576;oligosaccharyl transferase activity;0.00732585674323982!GO:0006378;mRNA polyadenylation;0.00738671227659861!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00739651263245623!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00743611767114896!GO:0033673;negative regulation of kinase activity;0.00746905510766753!GO:0006469;negative regulation of protein kinase activity;0.00746905510766753!GO:0015980;energy derivation by oxidation of organic compounds;0.00747998380370736!GO:0000159;protein phosphatase type 2A complex;0.00751004708445716!GO:0040029;regulation of gene expression, epigenetic;0.00762506925749505!GO:0043488;regulation of mRNA stability;0.00842093039988326!GO:0043487;regulation of RNA stability;0.00842093039988326!GO:0006302;double-strand break repair;0.00842513948962343!GO:0048489;synaptic vesicle transport;0.00850999470566214!GO:0048699;generation of neurons;0.00853266210317841!GO:0019207;kinase regulator activity;0.00853266210317841!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00869319930556722!GO:0016584;nucleosome positioning;0.00878149962757492!GO:0006383;transcription from RNA polymerase III promoter;0.00878149962757492!GO:0006595;polyamine metabolic process;0.00896459533231368!GO:0006904;vesicle docking during exocytosis;0.0091258134896349!GO:0030134;ER to Golgi transport vesicle;0.00983160671339691!GO:0030127;COPII vesicle coat;0.0100196609453851!GO:0012507;ER to Golgi transport vesicle membrane;0.0100196609453851!GO:0030518;steroid hormone receptor signaling pathway;0.0103050429245509!GO:0006376;mRNA splice site selection;0.0103331409509922!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0103331409509922!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0105270068879082!GO:0030427;site of polarized growth;0.0106182671272962!GO:0051789;response to protein stimulus;0.0106182671272962!GO:0006986;response to unfolded protein;0.0106182671272962!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0108202963096624!GO:0008094;DNA-dependent ATPase activity;0.0108202963096624!GO:0051348;negative regulation of transferase activity;0.0108314423706456!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0109082500095922!GO:0043414;biopolymer methylation;0.0109082500095922!GO:0005876;spindle microtubule;0.0109966510242657!GO:0016251;general RNA polymerase II transcription factor activity;0.0111272380174707!GO:0008022;protein C-terminus binding;0.0112464248260045!GO:0006695;cholesterol biosynthetic process;0.0113682607565284!GO:0003684;damaged DNA binding;0.0115418646798378!GO:0043681;protein import into mitochondrion;0.0121188048202463!GO:0008312;7S RNA binding;0.0121834240062347!GO:0007409;axonogenesis;0.0122856404640157!GO:0030426;growth cone;0.0126162757332894!GO:0007019;microtubule depolymerization;0.0126808623668621!GO:0050681;androgen receptor binding;0.0127027769799144!GO:0000339;RNA cap binding;0.0130307288776898!GO:0005885;Arp2/3 protein complex;0.0131697042333134!GO:0007004;telomere maintenance via telomerase;0.0133045348349959!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0136189991544217!GO:0005788;endoplasmic reticulum lumen;0.0136601323359296!GO:0031072;heat shock protein binding;0.0137357738472251!GO:0030658;transport vesicle membrane;0.0142957042815653!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0146359286188034!GO:0006352;transcription initiation;0.0149660643794248!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0151979598747725!GO:0005083;small GTPase regulator activity;0.0152805365344078!GO:0008286;insulin receptor signaling pathway;0.0158622680186545!GO:0008180;signalosome;0.0159411975213603!GO:0048487;beta-tubulin binding;0.0162278772110658!GO:0001725;stress fiber;0.0162726193078662!GO:0032432;actin filament bundle;0.0162726193078662!GO:0018196;peptidyl-asparagine modification;0.0170066617476538!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0170066617476538!GO:0030660;Golgi-associated vesicle membrane;0.0170286924565716!GO:0006818;hydrogen transport;0.017249815846188!GO:0000082;G1/S transition of mitotic cell cycle;0.0174420653931276!GO:0005637;nuclear inner membrane;0.0174420653931276!GO:0046467;membrane lipid biosynthetic process;0.0174843716185974!GO:0000792;heterochromatin;0.0176941218410426!GO:0005684;U2-dependent spliceosome;0.0179297221046922!GO:0043086;negative regulation of catalytic activity;0.0180321029929342!GO:0005832;chaperonin-containing T-complex;0.0184537264941415!GO:0006470;protein amino acid dephosphorylation;0.0184778036642061!GO:0015992;proton transport;0.0185213206839906!GO:0030320;cellular monovalent inorganic anion homeostasis;0.01956743905192!GO:0055083;monovalent inorganic anion homeostasis;0.01956743905192!GO:0055064;chloride ion homeostasis;0.01956743905192!GO:0030644;cellular chloride ion homeostasis;0.01956743905192!GO:0016859;cis-trans isomerase activity;0.0196887902685903!GO:0043005;neuron projection;0.0198928157135563!GO:0019208;phosphatase regulator activity;0.0203963308413058!GO:0031175;neurite development;0.0204103931736291!GO:0032259;methylation;0.0209013604219236!GO:0051052;regulation of DNA metabolic process;0.0211699994734864!GO:0003730;mRNA 3'-UTR binding;0.0216639009035285!GO:0042026;protein refolding;0.0217366060950452!GO:0006310;DNA recombination;0.0221397837665752!GO:0016779;nucleotidyltransferase activity;0.0228944340533889!GO:0012506;vesicle membrane;0.0235589848518817!GO:0005762;mitochondrial large ribosomal subunit;0.0236448127539588!GO:0000315;organellar large ribosomal subunit;0.0236448127539588!GO:0017166;vinculin binding;0.0236609972068972!GO:0008276;protein methyltransferase activity;0.0236609972068972!GO:0032200;telomere organization and biogenesis;0.023761169327208!GO:0000723;telomere maintenance;0.023761169327208!GO:0007093;mitotic cell cycle checkpoint;0.0240054220496443!GO:0048666;neuron development;0.0243360658186389!GO:0043624;cellular protein complex disassembly;0.0245663526815608!GO:0032984;macromolecular complex disassembly;0.0246122683335382!GO:0000781;chromosome, telomeric region;0.0248138967172824!GO:0030135;coated vesicle;0.0251654198471186!GO:0006892;post-Golgi vesicle-mediated transport;0.0256897246684965!GO:0045502;dynein binding;0.0257369946308376!GO:0065009;regulation of a molecular function;0.0265223607355639!GO:0044452;nucleolar part;0.0270337666217517!GO:0003702;RNA polymerase II transcription factor activity;0.0271992544893004!GO:0031902;late endosome membrane;0.0277265283705045!GO:0033116;ER-Golgi intermediate compartment membrane;0.0277566435350595!GO:0007021;tubulin folding;0.0280913238544784!GO:0019783;small conjugating protein-specific protease activity;0.0290645726683414!GO:0047485;protein N-terminus binding;0.0291893191986921!GO:0044433;cytoplasmic vesicle part;0.0299519811928362!GO:0003779;actin binding;0.0308043033262411!GO:0032508;DNA duplex unwinding;0.0314129501658992!GO:0032392;DNA geometric change;0.0314129501658992!GO:0022890;inorganic cation transmembrane transporter activity;0.0314129501658992!GO:0007265;Ras protein signal transduction;0.0316916440843351!GO:0004843;ubiquitin-specific protease activity;0.0316916440843351!GO:0051338;regulation of transferase activity;0.0317103926383688!GO:0042585;germinal vesicle;0.0318553565005377!GO:0003899;DNA-directed RNA polymerase activity;0.0318553565005377!GO:0050770;regulation of axonogenesis;0.0324013282080186!GO:0006611;protein export from nucleus;0.0337923704499454!GO:0004221;ubiquitin thiolesterase activity;0.0346557798939765!GO:0046474;glycerophospholipid biosynthetic process;0.0354082729441282!GO:0009117;nucleotide metabolic process;0.0357211829167646!GO:0000049;tRNA binding;0.0357749069228855!GO:0005938;cell cortex;0.0358059586852366!GO:0031114;regulation of microtubule depolymerization;0.0358837806811675!GO:0007026;negative regulation of microtubule depolymerization;0.0358837806811675!GO:0006289;nucleotide-excision repair;0.0358957677872237!GO:0005881;cytoplasmic microtubule;0.0358957677872237!GO:0031529;ruffle organization and biogenesis;0.0362073360473164!GO:0007006;mitochondrial membrane organization and biogenesis;0.0366432279007369!GO:0000314;organellar small ribosomal subunit;0.0368178143267899!GO:0005763;mitochondrial small ribosomal subunit;0.0368178143267899!GO:0043631;RNA polyadenylation;0.0372338343443404!GO:0022415;viral reproductive process;0.0372740606096198!GO:0019717;synaptosome;0.0377240373895892!GO:0032594;protein transport within lipid bilayer;0.0377240373895892!GO:0032907;transforming growth factor-beta3 production;0.0377240373895892!GO:0032596;protein transport into lipid raft;0.0377240373895892!GO:0032910;regulation of transforming growth factor-beta3 production;0.0377240373895892!GO:0032595;B cell receptor transport within lipid bilayer;0.0377240373895892!GO:0033606;chemokine receptor transport within lipid bilayer;0.0377240373895892!GO:0032600;chemokine receptor transport out of lipid raft;0.0377240373895892!GO:0032599;protein transport out of lipid raft;0.0377240373895892!GO:0032597;B cell receptor transport into lipid raft;0.0377240373895892!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0377240373895892!GO:0008154;actin polymerization and/or depolymerization;0.0383580446761732!GO:0030516;regulation of axon extension;0.0385634473887389!GO:0051287;NAD binding;0.0390553199503469!GO:0006401;RNA catabolic process;0.0395150011000039!GO:0030880;RNA polymerase complex;0.0397366829852317!GO:0043241;protein complex disassembly;0.0397366829852317!GO:0030176;integral to endoplasmic reticulum membrane;0.0398255833111517!GO:0043407;negative regulation of MAP kinase activity;0.0402343711488482!GO:0008097;5S rRNA binding;0.0405385530698185!GO:0030175;filopodium;0.0408478009334243!GO:0043130;ubiquitin binding;0.0414579938368703!GO:0032182;small conjugating protein binding;0.0414579938368703!GO:0004860;protein kinase inhibitor activity;0.0424476088567408!GO:0004721;phosphoprotein phosphatase activity;0.0425967932115159!GO:0017134;fibroblast growth factor binding;0.0427541620998824!GO:0030522;intracellular receptor-mediated signaling pathway;0.0430125776876526!GO:0000228;nuclear chromosome;0.0431250697464651!GO:0005856;cytoskeleton;0.0434091110325026!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0441860363060468!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0441860363060468!GO:0031371;ubiquitin conjugating enzyme complex;0.0448771285358582!GO:0007243;protein kinase cascade;0.0450338778987136!GO:0005521;lamin binding;0.046096244369458!GO:0000786;nucleosome;0.046096244369458!GO:0005862;muscle thin filament tropomyosin;0.0474679570218922!GO:0006665;sphingolipid metabolic process;0.0474679570218922!GO:0042981;regulation of apoptosis;0.0476956655622096!GO:0043549;regulation of kinase activity;0.0477719128485381!GO:0043067;regulation of programmed cell death;0.0478317421221922!GO:0031628;opioid receptor binding;0.0481181874414251!GO:0031852;mu-type opioid receptor binding;0.0481181874414251!GO:0019902;phosphatase binding;0.0499391434434697
|sample_id=11352
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=brain
|top_motifs=SOX2:3.89532743069;NANOG:3.86562177497;PRRX1,2:3.02229238963;NKX2-3_NKX2-5:2.93608032689;MZF1:2.75785011343;ZFP161:2.70250762991;MED-1{core}:2.55112286491;SOX17:2.45834408644;LEF1_TCF7_TCF7L1,2:2.44911135189;TFDP1:2.40393904883;POU5F1:2.40015993043;JUN:2.3503285681;CUX2:2.32130075503;OCT4_SOX2{dimer}:2.30369422105;ADNP_IRX_SIX_ZHX:2.27314120814;MTE{core}:2.25633918385;EGR1..3:2.14312080109;PAX4:2.12086804123;FOXM1:2.10336280256;SMAD1..7,9:1.94347644055;T:1.9042822883;ALX1:1.89102213707;SOX{8,9,10}:1.86539263606;GFI1:1.7549590933;NHLH1,2:1.73728499255;MAZ:1.73237297933;PRDM1:1.72978280624;ATF2:1.68447798261;RFX1:1.67494616892;LHX3,4:1.66478119337;BREu{core}:1.61873263585;GTF2I:1.60754581537;PAX5:1.56790741158;STAT1,3:1.55204813783;MYFfamily:1.54235173415;ZBTB6:1.53369890057;HOXA9_MEIS1:1.52906243508;PAX8:1.50540379204;PBX1:1.50272673774;POU3F1..4:1.49872518879;AHR_ARNT_ARNT2:1.48750736987;PPARG:1.43084659642;ZIC1..3:1.36349230618;TGIF1:1.36151251531;NRF1:1.35960111091;PATZ1:1.34751136791;POU6F1:1.31621374371;NR1H4:1.294288309;CDC5L:1.28945303172;RREB1:1.22347504599;RORA:1.21935459737;REST:1.18128884319;RBPJ:1.17434059131;CRX:1.17207245755;TFAP2B:1.14358776878;ATF4:1.13673748093;SPZ1:1.13538976528;YY1:1.07777122731;VSX1,2:1.06108682969;PAX3,7:1.02718362512;RFX2..5_RFXANK_RFXAP:1.01575402743;NFY{A,B,C}:1.0058591315;ONECUT1,2:0.984646187788;GCM1,2:0.972036255873;POU1F1:0.970293934363;HIC1:0.936794341438;STAT5{A,B}:0.920637236285;NKX6-1,2:0.916160158798;PAX6:0.793442846435;ZNF143:0.744514304042;AR:0.729313861067;GFI1B:0.709957551361;E2F1..5:0.700504526516;ATF5_CREB3:0.687916794277;CDX1,2,4:0.637588758059;FOXQ1:0.610309168564;XBP1:0.606017694629;MYB:0.544746943499;FOXP1:0.536625321496;MAFB:0.488036266218;EP300:0.484830172524;FOXD3:0.445918121307;GATA4:0.43197645216;GZF1:0.429014756177;TLX2:0.375374586549;FOXN1:0.329350259662;CREB1:0.313922089067;ARID5B:0.307710495254;LMO2:0.303874781117;PAX1,9:0.292732775177;HOX{A5,B5}:0.280895739668;FOXP3:0.278815905096;SOX5:0.269320143037;DBP:0.242670812159;NKX2-1,4:0.240395278653;PDX1:0.221342920392;NANOG{mouse}:0.217130921397;GTF2A1,2:0.168039893924;KLF4:0.165652950405;HBP1_HMGB_SSRP1_UBTF:0.157038651883;HAND1,2:0.153148184671;ELK1,4_GABP{A,B1}:0.149404362312;ZNF384:0.14626835017;NKX3-2:0.122205423564;ZNF423:0.0849873806541;TEF:0.0843071721304;GATA6:0.0757241975373;EN1,2:0.0511699730798;TLX1..3_NFIC{dimer}:0.0329695644344;SP1:0.0067832774803;MYOD1:0.00677742775098;FOXA2:-0.00448574448143;MEF2{A,B,C,D}:-0.00746846006284;MTF1:-0.00786718487272;XCPE1{core}:-0.0121508141535;BPTF:-0.0124535322381;NR3C1:-0.023523168426;EVI1:-0.0349228088781;NFE2L2:-0.0374995243061;HMGA1,2:-0.0445937573065;HOX{A4,D4}:-0.0623196810324;TBX4,5:-0.0669163980557;HNF1A:-0.0727541436544;ESRRA:-0.0758526147622;FOX{F1,F2,J1}:-0.0973984067615;ZBTB16:-0.123993029896;TOPORS:-0.154518882907;IKZF1:-0.156181156105;EBF1:-0.22401642899;FOS_FOS{B,L1}_JUN{B,D}:-0.225488178386;POU2F1..3:-0.260563387977;NFATC1..3:-0.265668627844;TBP:-0.28173888614;SREBF1,2:-0.289954490977;NKX2-2,8:-0.300756378165;TFAP4:-0.307870219376;NKX3-1:-0.316958844953;NR6A1:-0.344475036056;NFIL3:-0.347022907347;RUNX1..3:-0.347231716152;BACH2:-0.36258300423;STAT2,4,6:-0.388519467142;TP53:-0.389897598193;FOSL2:-0.405106877863;NFE2:-0.406053970267;NFIX:-0.420214036958;HNF4A_NR2F1,2:-0.441244203162;FOX{D1,D2}:-0.475586365474;PAX2:-0.477640525152;PITX1..3:-0.509111730063;SPI1:-0.518972544718;NFKB1_REL_RELA:-0.519955665234;SPIB:-0.525620534267;DMAP1_NCOR{1,2}_SMARC:-0.544031929252;TFCP2:-0.575391138202;ZEB1:-0.579624705296;IRF7:-0.592872755219;HSF1,2:-0.607828367729;NFE2L1:-0.610716679512;CEBPA,B_DDIT3:-0.631734742722;IKZF2:-0.663314655958;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.6653405199;UFEwm:-0.671904073111;SNAI1..3:-0.682166000565;HLF:-0.700778437799;MYBL2:-0.741972682551;ATF6:-0.752101169013;SRF:-0.773124096682;TEAD1:-0.78414328288;TAL1_TCF{3,4,12}:-0.788619399407;bHLH_family:-0.841068120708;IRF1,2:-0.844820528744;HMX1:-0.865260004987;ETS1,2:-0.917555166953;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.99559681899;GLI1..3:-1.11042753387;ELF1,2,4:-1.13794872178;ZNF238:-1.15167902807;FOXL1:-1.15804039861;ZNF148:-1.18568835706;HOX{A6,A7,B6,B7}:-1.19548215292;HES1:-1.25720889452;AIRE:-1.28817781688;HIF1A:-1.29822021531;RXR{A,B,G}:-1.30942310671;FOXO1,3,4:-1.36027548755;NR5A1,2:-1.36324883575;TFAP2{A,C}:-1.4572478032;ESR1:-1.48177961464;RXRA_VDR{dimer}:-1.69116839591;ALX4:-1.70066992331;FOX{I1,J2}:-1.78279984029
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11352-117H2;search_select_hide=table117:FF:11352-117H2
}}
}}

Latest revision as of 17:54, 4 June 2020

Name:Neural stem cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11384
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebrain
dev stage18 weeks old fetus
sexunknown
ageembryo 18week
cell typeneural stem cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2649
catalog numbercustom
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005458
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11384 CAGE DRX008374 DRR009246
Accession ID Hg19

Library idBAMCTSS
CNhs11384 DRZ000671 DRZ002056
Accession ID Hg38

Library idBAMCTSS
CNhs11384 DRZ012021 DRZ013406
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005458
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10014.GTTTCG sRNA-Seq DRX037243 DRR041609
Accession ID Hg19

Library idBAMCTSS
SRhi10014.GTTTCG DRZ007251


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.362
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0367
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.288
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.226
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.338
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain1.185
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.375
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.168
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0901
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.142
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.326
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.362
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11384

Jaspar motifP-value
MA0002.29.23419e-4
MA0003.10.188
MA0004.10.442
MA0006.10.476
MA0007.10.0806
MA0009.10.107
MA0014.10.465
MA0017.10.00388
MA0018.20.005
MA0019.10.991
MA0024.10.00918
MA0025.10.626
MA0027.10.28
MA0028.10.675
MA0029.10.563
MA0030.10.394
MA0031.10.584
MA0035.20.423
MA0038.11.98879e-5
MA0039.20.198
MA0040.10.949
MA0041.10.316
MA0042.10.564
MA0043.10.0889
MA0046.10.632
MA0047.20.0955
MA0048.10.415
MA0050.11.84303e-6
MA0051.10.00706
MA0052.10.586
MA0055.10.0682
MA0057.10.425
MA0058.10.385
MA0059.10.14
MA0060.12.9585e-7
MA0061.10.0738
MA0062.20.178
MA0065.20.00116
MA0066.10.109
MA0067.10.784
MA0068.10.0128
MA0069.10.926
MA0070.10.0198
MA0071.10.0289
MA0072.10.769
MA0073.10.467
MA0074.10.184
MA0076.10.957
MA0077.10.115
MA0078.10.238
MA0079.20.799
MA0080.22.35073e-8
MA0081.10.151
MA0083.10.56
MA0084.10.415
MA0087.10.446
MA0088.10.225
MA0090.10.0681
MA0091.10.465
MA0092.10.48
MA0093.10.515
MA0099.24.72777e-6
MA0100.10.322
MA0101.10.099
MA0102.20.0472
MA0103.10.0363
MA0104.20.716
MA0105.10.0205
MA0106.10.0999
MA0107.10.121
MA0108.20.239
MA0111.10.536
MA0112.22.48492e-4
MA0113.10.0421
MA0114.10.0215
MA0115.10.0865
MA0116.10.013
MA0117.10.8
MA0119.10.158
MA0122.10.604
MA0124.10.366
MA0125.10.0325
MA0131.10.882
MA0135.10.0714
MA0136.13.18955e-5
MA0137.20.687
MA0138.20.615
MA0139.10.383
MA0140.10.0492
MA0141.10.00214
MA0142.10.0538
MA0143.10.0226
MA0144.10.315
MA0145.10.188
MA0146.10.0117
MA0147.10.572
MA0148.10.105
MA0149.10.0176
MA0150.10.00215
MA0152.10.964
MA0153.10.797
MA0154.10.0352
MA0155.10.473
MA0156.11.11616e-4
MA0157.10.0674
MA0159.10.00285
MA0160.10.0245
MA0162.10.129
MA0163.14.01391e-5
MA0164.10.476
MA0258.10.0108
MA0259.10.886



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11384

Novel motifP-value
10.0579
100.0838
1000.406
1010.571
1020.808
1030.341
1040.153
1050.792
1060.0363
1070.114
1080.615
1099.12025e-4
110.015
1100.167
1110.114
1120.0826
1130.758
1140.00589
1150.723
1160.262
1170.0213
1180.154
1190.12
120.938
1200.643
1210.493
1220.935
1230.556
1240.0331
1250.93
1260.0328
1270.324
1280.248
1290.8
130.015
1300.66
1310.749
1320.862
1330.417
1340.765
1350.567
1360.00654
1370.394
1380.558
1390.177
140.679
1400.131
1410.45
1420.657
1430.0188
1440.731
1450.366
1460.88
1470.938
1480.0686
1490.0333
150.119
1500.219
1510.434
1520.0333
1530.725
1540.699
1550.31
1560.247
1570.271
1580.773
1590.723
160.0273
1600.108
1610.243
1620.794
1630.728
1640.0108
1650.639
1660.925
1670.188
1680.438
1690.0122
170.0757
180.387
190.159
20.697
200.301
210.0211
220.132
230.23
240.142
250.633
260.00837
270.506
280.922
290.0244
30.0288
300.843
310.831
320.0119
330.305
340.747
350.65
360.182
370.0268
380.214
390.2
40.529
400.0457
410.938
420.196
430.163
440.0129
450.752
460.127
470.0539
480.0516
490.245
50.274
500.332
510.598
520.639
530.888
540.464
550.264
560.335
570.477
580.196
590.04
60.445
600.0862
610.0194
620.156
630.0989
640.29
650.143
660.992
670.692
680.545
690.247
70.269
700.00985
710.0095
720.3
730.00944
740.131
750.0327
760.266
770.0851
780.0119
790.00711
80.0481
800.802
810.375
820.136
830.157
840.668
850.0615
860.332
870.0236
880.543
890.571
90.46
900.763
910.877
920.28
930.738
940.118
950.00183
960.978
970.912
980.359
990.348



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11384


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000047 (neuronal stem cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000255 (eukaryotic cell)
0000034 (stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000120 (human neural stem cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

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