FF:11440-118H9: Difference between revisions

Latest revision as of 18:01, 4 June 2020

Name:	Synoviocyte, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12050
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	synovium
dev stage	61 years old adult
sex	male
age	61
cell type	synovial cell
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	2540
catalog number	CA408-R10a
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005569

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12050		CAGE		DRX008518		DRR009390

Accession ID Hg19

Library id		BAM		CTSS
CNhs12050		DRZ000815		DRZ002200

Accession ID Hg38

Library id		BAM		CTSS
CNhs12050		DRZ012165		DRZ013550

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005569

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10004.GGCTAC		sRNA-Seq		DRX037041		DRR041407

Accession ID Hg19

Library id		BAM		CTSS
SRhi10004.GGCTAC		DRZ007049

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.235
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.324
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.124
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.115
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.318
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.124
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.56
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0862
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.423
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0.22
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.417
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.298
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.158
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.948
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.474
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.45
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.723
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.167
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.124
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.665
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.474
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.474
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.808
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.22
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.723
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0839
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.869
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12050

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.102
MA0003.1	MA0003.1	0.22
MA0004.1	MA0004.1	0.156
MA0006.1	MA0006.1	0.329
MA0007.1	MA0007.1	0.684
MA0009.1	MA0009.1	0.803
MA0014.1	MA0014.1	0.306
MA0017.1	MA0017.1	0.355
MA0018.2	MA0018.2	3.29475e-5
MA0019.1	MA0019.1	0.999
MA0024.1	MA0024.1	1.09187e-4
MA0025.1	MA0025.1	0.00719
MA0027.1	MA0027.1	0.916
MA0028.1	MA0028.1	0.00437
MA0029.1	MA0029.1	0.499
MA0030.1	MA0030.1	0.0659
MA0031.1	MA0031.1	0.465
MA0035.2	MA0035.2	0.153
MA0038.1	MA0038.1	5.06239e-4
MA0039.2	MA0039.2	0.0329
MA0040.1	MA0040.1	0.79
MA0041.1	MA0041.1	0.935
MA0042.1	MA0042.1	0.473
MA0043.1	MA0043.1	4.06828e-4
MA0046.1	MA0046.1	0.00348
MA0047.2	MA0047.2	0.485
MA0048.1	MA0048.1	0.143
MA0050.1	MA0050.1	0.414
MA0051.1	MA0051.1	0.344
MA0052.1	MA0052.1	0.0857
MA0055.1	MA0055.1	0.922
MA0057.1	MA0057.1	0.29
MA0058.1	MA0058.1	0.0749
MA0059.1	MA0059.1	0.494
MA0060.1	MA0060.1	5.20979e-19
MA0061.1	MA0061.1	0.606
MA0062.2	MA0062.2	1.29664e-9
MA0065.2	MA0065.2	0.479
MA0066.1	MA0066.1	0.986
MA0067.1	MA0067.1	0.0317
MA0068.1	MA0068.1	0.108
MA0069.1	MA0069.1	0.197
MA0070.1	MA0070.1	0.99
MA0071.1	MA0071.1	0.337
MA0072.1	MA0072.1	0.271
MA0073.1	MA0073.1	0.885
MA0074.1	MA0074.1	0.136
MA0076.1	MA0076.1	2.50076e-4
MA0077.1	MA0077.1	0.0463
MA0078.1	MA0078.1	0.895
MA0079.2	MA0079.2	0.78
MA0080.2	MA0080.2	9.10965e-8
MA0081.1	MA0081.1	0.00107
MA0083.1	MA0083.1	0.273
MA0084.1	MA0084.1	0.397
MA0087.1	MA0087.1	0.239
MA0088.1	MA0088.1	0.643
MA0090.1	MA0090.1	0.00395
MA0091.1	MA0091.1	0.143
MA0092.1	MA0092.1	0.467
MA0093.1	MA0093.1	0.101
MA0099.2	MA0099.2	3.99725e-8
MA0100.1	MA0100.1	0.075
MA0101.1	MA0101.1	0.282
MA0102.2	MA0102.2	0.858
MA0103.1	MA0103.1	0.0412
MA0104.2	MA0104.2	0.0594
MA0105.1	MA0105.1	0.72
MA0106.1	MA0106.1	0.16
MA0107.1	MA0107.1	0.695
MA0108.2	MA0108.2	0.956
MA0111.1	MA0111.1	0.655
MA0112.2	MA0112.2	0.00655
MA0113.1	MA0113.1	0.53
MA0114.1	MA0114.1	0.441
MA0115.1	MA0115.1	0.768
MA0116.1	MA0116.1	0.0148
MA0117.1	MA0117.1	0.0988
MA0119.1	MA0119.1	0.168
MA0122.1	MA0122.1	0.66
MA0124.1	MA0124.1	0.2
MA0125.1	MA0125.1	0.0059
MA0131.1	MA0131.1	0.254
MA0135.1	MA0135.1	0.193
MA0136.1	MA0136.1	4.55614e-11
MA0137.2	MA0137.2	0.718
MA0138.2	MA0138.2	0.203
MA0139.1	MA0139.1	0.691
MA0140.1	MA0140.1	0.104
MA0141.1	MA0141.1	0.0254
MA0142.1	MA0142.1	0.0116
MA0143.1	MA0143.1	0.324
MA0144.1	MA0144.1	0.769
MA0145.1	MA0145.1	0.323
MA0146.1	MA0146.1	0.143
MA0147.1	MA0147.1	0.0938
MA0148.1	MA0148.1	0.542
MA0149.1	MA0149.1	0.545
MA0150.1	MA0150.1	0.0243
MA0152.1	MA0152.1	0.0474
MA0153.1	MA0153.1	0.632
MA0154.1	MA0154.1	0.211
MA0155.1	MA0155.1	0.2
MA0156.1	MA0156.1	6.62252e-13
MA0157.1	MA0157.1	0.914
MA0159.1	MA0159.1	0.0389
MA0160.1	MA0160.1	0.976
MA0162.1	MA0162.1	0.0282
MA0163.1	MA0163.1	0.00412
MA0164.1	MA0164.1	0.658
MA0258.1	MA0258.1	0.208
MA0259.1	MA0259.1	0.0706

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12050

Novel motif	Logo	P-value
1	1	0.603
10	10	0.221
100	100	0.6
101	101	0.729
102	102	0.0406
103	103	0.44
104	104	0.926
105	105	0.0903
106	106	0.457
107	107	0.206
108	108	0.111
109	109	0.473
11	11	0.231
110	110	0.205
111	111	0.455
112	112	0.293
113	113	0.261
114	114	0.119
115	115	0.0344
116	116	0.0108
117	117	0.913
118	118	0.48
119	119	0.444
12	12	0.169
120	120	0.746
121	121	0.0505
122	122	0.00742
123	123	0.103
124	124	0.395
125	125	0.824
126	126	0.498
127	127	0.772
128	128	0.174
129	129	0.879
13	13	0.628
130	130	0.205
131	131	0.41
132	132	0.0759
133	133	0.179
134	134	0.604
135	135	0.676
136	136	0.631
137	137	0.318
138	138	0.742
139	139	0.125
14	14	0.633
140	140	0.966
141	141	0.973
142	142	0.617
143	143	0.76
144	144	0.143
145	145	0.368
146	146	0.474
147	147	0.183
148	148	0.578
149	149	0.00335
15	15	0.981
150	150	0.477
151	151	0.323
152	152	0.0897
153	153	0.651
154	154	0.868
155	155	0.877
156	156	0.465
157	157	0.91
158	158	0.0719
159	159	0.992
16	16	0.0302
160	160	0.335
161	161	0.977
162	162	0.45
163	163	0.859
164	164	0.00896
165	165	0.737
166	166	0.103
167	167	0.614
168	168	0.177
169	169	0.00518
17	17	0.248
18	18	0.252
19	19	0.00232
2	2	0.182
20	20	0.681
21	21	0.128
22	22	0.117
23	23	0.211
24	24	0.0602
25	25	0.389
26	26	0.3
27	27	0.191
28	28	0.23
29	29	0.138
3	3	0.356
30	30	0.377
31	31	0.6
32	32	2.172e-14
33	33	0.848
34	34	0.49
35	35	0.995
36	36	0.0617
37	37	0.128
38	38	0.911
39	39	0.172
4	4	0.374
40	40	0.559
41	41	0.381
42	42	0.812
43	43	0.343
44	44	0.21
45	45	0.821
46	46	0.384
47	47	0.915
48	48	0.665
49	49	0.72
5	5	0.643
50	50	0.388
51	51	0.662
52	52	0.692
53	53	0.433
54	54	0.545
55	55	0.216
56	56	0.729
57	57	0.903
58	58	0.492
59	59	0.0516
6	6	0.511
60	60	0.36
61	61	0.636
62	62	0.897
63	63	0.141
64	64	0.918
65	65	0.328
66	66	0.0113
67	67	0.801
68	68	0.15
69	69	0.869
7	7	0.291
70	70	0.116
71	71	0.341
72	72	0.814
73	73	0.0513
74	74	0.16
75	75	0.456
76	76	0.459
77	77	3.25053e-4
78	78	0.191
79	79	3.02658e-4
8	8	0.0526
80	80	0.0637
81	81	0.61
82	82	0.322
83	83	0.0241
84	84	0.372
85	85	0.0486
86	86	0.495
87	87	0.795
88	88	0.0833
89	89	0.0108
9	9	0.311
90	90	0.339
91	91	0.697
92	92	0.104
93	93	0.723
94	94	0.343
95	95	0.734
96	96	0.673
97	97	0.448
98	98	0.426
99	99	0.023

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12050

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000187 human synovial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000499 (stromal cell)
0000153 (GAG secreting cell)
0000327 (extracellular matrix secreting cell)
0000447 (carbohydrate secreting cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000214 (synovial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0004457 (cavity lining)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0006914 (squamous epithelium)
0004905 (articulation)
0000486 (multilaminar epithelium)
0006915 (stratified squamous epithelium)
0007616 (layer of synovial tissue)
0000042 (serous membrane)
0000982 (skeletal joint)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002217 (synovial joint)
0002018 (synovial membrane of synovial joint)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0004770 (articular system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000187 (human synovial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005569
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005569
+|accession_numbers=CAGE;DRX008518;DRR009390;DRZ000815;DRZ002200;DRZ012165;DRZ013550
+|accession_numbers_RNASeq=sRNA-Seq;DRX037041;DRR041407;DRZ007049
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0004457,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0006914,UBERON:0004905,UBERON:0000486,UBERON:0006915,UBERON:0007616,UBERON:0000042,UBERON:0000982,UBERON:0004458,UBERON:0010317,UBERON:0002217,UBERON:0002018,UBERON:0002204,UBERON:0001434,UBERON:0004770
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000499,CL:0000153,CL:0000327,CL:0000447,CL:0000215,CL:0000255,CL:0000214
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.82!73.10!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.75!146.87!OSR1;;chr5:158526917..158526932,-!p1@EBF1!1.69!114.92!EBF1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.67!45.77!HOXC5;;chr9:132427972..132428056,+!p1@PRRX2!1.64!54.99!PRRX2;;chr9:132427883..132427951,+!p2@PRRX2!1.64!42.48!PRRX2;;chr6:85474299..85474324,-!p1@TBX18!1.61!70.14!TBX18;;chr10:131762504..131762555,-!p1@EBF3!1.47!28.65!EBF3;;chr8:25902876..25902936,-!p1@EBF2!1.32!20.09!EBF2;;chr5:158527104..158527135,-!p4@EBF1!1.32!19.76!EBF1;;chr2:239756671..239756732,+!p1@TWIST2!1.31!61.58!TWIST2;;chr7:19157248..19157268,-!p1@TWIST1!1.30!52.03!TWIST1;;chr17:48072574..48072597,-!p1@DLX3!1.30!19.10!DLX3;;chr1:170632477..170632506,+!p6@PRRX1!1.28!18.11!PRRX1;;chr8:72756667..72756736,-!p2@MSC!1.26!26.67!MSC;;chr12:53614115..53614154,-!p1@RARG!1.23!83.97!RARG;;chr14:61116183..61116208,-!p1@SIX1!1.23!59.60!SIX1;;chr20:51588873..51588953,+!p1@TSHZ2!1.23!21.07!TSHZ2;;chr19:13134772..13134822,+!p2@NFIX!1.22!22.72!NFIX;;chr8:72756637..72756664,-!p3@MSC!1.22!17.78!MSC;;chr7:44143925..44143970,+!p1@AEBP1!1.21!331.93!AEBP1;;chr16:54320617..54320643,-!p3@IRX3!1.19!18.44!IRX3;;chr2:239756739..239756755,+!p2@TWIST2!1.17!23.71!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.17!18.77!PRRX1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.16!13.50!HOXC5;;chr16:79634624..79634642,-!p1@MAF!1.15!51.04!MAF;;chr10:63809013..63809041,+!p3@ARID5B!1.14!71.13!ARID5B;;chr1:170632959..170632987,+!p4@PRRX1!1.14!14.16!PRRX1;;chr10:119303078..119303169,+!p2@EMX2!1.12!12.18!EMX2;;chr7:19157043..19157088,-!p2@TWIST1!1.10!29.31!TWIST1;;chr7:28448965..28448994,+!p2@CREB5!1.07!38.20!CREB5;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.07!10.87!SEBOX;;chr1:170632137..170632172,+!p10@PRRX1!1.05!10.21!PRRX1;;chr12:54378923..54378966,+!p1@HOXC10!1.04!9.88!HOXC10;;chr16:79633894..79633954,-!p3@MAF!1.02!18.44!MAF;;chr16:54320646..54320672,-!p2@IRX3!1.02!14.49!IRX3;;chr2:45236540..45236577,-!p1@SIX2!1.02!9.55!SIX2;;chr5:158527139..158527161,-!p5@EBF1!1.01!9.22!EBF1;;chr11:46299199..46299233,+!p1@CREB3L1!1.00!47.42!CREB3L1;;chr5:134369905..134369972,-!p1@PITX1!1.00!13.83!PITX1;;chr12:54410948..54410992,+!p3@HOXC5!1.00!8.89!HOXC5;;chrY:21906594..21906622,-!p1@KDM5D!1.00!8.89!KDM5D;;chr19:50432453..50432468,+!p1@ATF5!0.99!507.11!ATF5;;chr10:63853436..63853442,+!p4@ARID5B!0.98!47.42!ARID5B;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.98!8.56!SEBOX;;chr2:176994408..176994492,+!p1@HOXD8!0.98!8.56!HOXD8;;chr11:46299539..46299620,+!p2@CREB3L1!0.97!14.49!CREB3L1;;chr8:72756267..72756296,-!p4@MSC!0.97!12.51!MSC;;chr8:72756213..72756243,-!p5@MSC!0.97!10.87!MSC;;chr7:15726296..15726315,-!p1@MEOX2!0.97!8.23!MEOX2;;chr12:54393880..54393962,+!p1@HOXC9!0.97!8.23!HOXC9;;chr12:52445218..52445237,+!p1@NR4A1!0.96!106.36!NR4A1;;chr16:79634595..79634620,-!p2@MAF!0.96!15.15!MAF;;chr18:19749541..19749557,+!p1@GATA6!0.95!25.36!GATA6;;chr1:170632723..170632739,+!p8@PRRX1!0.95!7.90!PRRX1;;chr21:36260773..36260804,-!p7@RUNX1!0.93!10.21!RUNX1;;chr10:63851669..63851682,+!p10@ARID5B!0.93!8.23!ARID5B;;chr1:170632250..170632277,+!p7@PRRX1!0.93!7.57!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.93!7.57!PRRX1;;chr15:67430351..67430366,+!p10@SMAD3!0.93!7.57!SMAD3;;chr10:63809106..63809127,+!p1@ARID5B!0.92!102.08!ARID5B;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.92!76.73!GLIS2;;chr12:54772960..54773015,-!p3@ZNF385A!0.92!36.55!ZNF385A;;chr10:63809077..63809089,+!p5@ARID5B!0.92!16.46!ARID5B;;chr6:1610293..1610310,+!p1@FOXC1!0.92!12.51!FOXC1;;chr1:170633262..170633285,+!p3@PRRX1!0.91!8.23!PRRX1;;chr14:24837368..24837401,+!p1@NFATC4!0.90!16.79!NFATC4;;chr1:170632762..170632786,+!p13@PRRX1!0.90!6.92!PRRX1;;chr20:51589402..51589423,+!p6@TSHZ2!0.90!6.92!TSHZ2;;chr7:27213893..27213954,-!p1@HOXA10!0.90!6.92!HOXA10;;chr7:44143997..44144008,+!p3@AEBP1!0.88!8.56!AEBP1;;chr14:75894714..75894733,+!p1@JDP2!0.87!192.64!JDP2;;chr9:110252035..110252057,-!p1@KLF4!0.87!109.33!KLF4;;chr5:174151553..174151610,+!p1@MSX2!0.87!10.87!MSX2;;chr4:26322267..26322334,+!p3@RBPJ!0.86!15.81!RBPJ;;chr7:44143978..44143989,+!p2@AEBP1!0.86!11.85!AEBP1;;chr12:54402745..54402788,+!p1@HOXC8!0.86!6.26!HOXC8;;chr1:170632683..170632696,+!p12@PRRX1!0.86!6.26!PRRX1;;chr20:51589133..51589159,+!p2@TSHZ2!0.86!6.26!TSHZ2;;chr18:22932080..22932170,-!p1@ZNF521!0.84!26.67!ZNF521;;chr12:53625966..53626012,-!p2@RARG!0.84!16.46!RARG;;chr1:170632115..170632136,+!p9@PRRX1!0.84!5.93!PRRX1;;chr7:27192185..27192209,-!p1@HOXA3!0.84!5.93!HOXA3;;chr10:31607702..31607755,+!p3@ZEB1!0.82!6.59!ZEB1;;chr5:158527253..158527264,-!p10@EBF1!0.82!5.60!EBF1;;chr8:49833948..49833973,-!p2@SNAI2!0.81!37.21!SNAI2;;chr7:28725740..28725778,+!p1@CREB5!0.80!52.03!CREB5;;chr7:42276787..42276815,-!p1@GLI3!0.80!15.15!GLI3;;chr16:54320675..54320715,-!p1@IRX3!0.80!12.18!IRX3;;chr8:99956662..99956684,+!p1@OSR2!0.80!8.56!OSR2;;chr18:22932004..22932021,-!p2@ZNF521!0.80!5.27!ZNF521;;chr19:13106214..13106382,+!p1@NFIX!0.79!131.72!NFIX;;chr3:157823517..157823562,-!p1@SHOX2!0.79!5.60!SHOX2;;chr1:158969752..158969780,+!p6@IFI16!0.78!9.22!IFI16;;chr16:79634581..79634592,-!p4@MAF!0.77!4.94!MAF;;chr8:93074803..93074845,-!p1@RUNX1T1!0.77!4.94!RUNX1T1;;chr3:71007344..71007348,-!p6@FOXP1!0.75!20.42!FOXP1;;chr4:26322673..26322684,+!p11@RBPJ!0.75!4.61!RBPJ;;chr5:174151612..174151633,+!p2@MSX2!0.75!4.61!MSX2;;chr7:15725757..15725828,-!p5@MEOX2!0.75!4.61!MEOX2;;chr7:27196267..27196311,-!p1@HOXA7!0.75!4.61!HOXA7;;chr7:28452130..28452154,+!p10@CREB5!0.75!4.61!CREB5;;chr10:131762410..131762436,-!p2@EBF3!0.75!4.61!EBF3;;chr8:49833978..49833996,-!p1@SNAI2!0.74!102.74!SNAI2;;chr7:28448995..28449011,+!p4@CREB5!0.74!6.59!CREB5;;chr2:8822176..8822196,+!p1@ID2!0.73!698.11!ID2;;chr16:54320158..54320200,-!p5@IRX3!0.73!6.59!IRX3;;chr19:50435736..50435781,+!p3@ATF5!0.73!6.26!ATF5;;chr1:23885981..23886002,-!p1@ID3!0.72!848.59!ID3;;chr8:48650715..48650735,-!p1@CEBPD!0.72!611.50!CEBPD;;chr17:46126136..46126152,+!p1@NFE2L1!0.72!247.63!NFE2L1;;chr15:67458491..67458505,+!p18@SMAD3!0.72!4.28!SMAD3;;chr17:46132044..46132080,+!p4@NFE2L1!0.72!4.28!NFE2L1;;chr1:44513995..44514031,+!p1@KLF17!0.72!4.28!KLF17;;chr11:125034640..125034655,+!p1@PKNOX2!0.72!4.28!PKNOX2;;chr2:119605214..119605230,-!p1@EN1!0.72!4.28!EN1;;chr17:1959369..1959388,+!p2@HIC1!0.71!11.85!HIC1;;chr1:23696308..23696339,-!p2@ZNF436!0.71!9.55!ZNF436;;chr2:145277882..145277967,-!p3@ZEB2!0.71!7.57!ZEB2;;chr9:110250697..110250738,-!p2@KLF4!0.71!4.94!KLF4;;chr10:114710244..114710257,+!p3@TCF7L2!0.70!11.85!TCF7L2;;chr15:66994561..66994597,+!p2@SMAD6!0.70!10.54!SMAD6;;chr8:72756063..72756125,-!p1@MSC!0.70!8.89!MSC;;chr11:706938..707008,-!p3@DEAF1!0.70!5.27!DEAF1;;chr2:85980919..85980942,+!p4@ATOH8!0.70!4.28!ATOH8;;chr6:144329384..144329405,-!p1@PLAGL1!0.69!51.37!PLAGL1;;chr9:4300050..4300118,-!p1@GLIS3!0.69!28.65!GLIS3;;chr4:26323764..26323821,+!p15@RBPJ!0.69!3.95!RBPJ;;chr1:170632439..170632465,+!p11@PRRX1!0.69!3.95!PRRX1;;chr1:170633194..170633205,+!p18@PRRX1!0.69!3.95!PRRX1;;chr6:1612300..1612324,+!p3@FOXC1!0.69!3.95!FOXC1;;chr8:72756380..72756427,-!p8@MSC!0.69!3.95!MSC;;chr15:66995062..66995065,+!p8@SMAD6!0.69!3.95!SMAD6;;chr10:77161504..77161530,-!p1@ZNF503!0.68!58.61!ZNF503;;chr7:17338266..17338282,+!p1@AHR!0.68!46.76!AHR;;chr3:69788576..69788648,+!p1@MITF!0.68!23.05!MITF;;chr19:45504688..45504782,+!p1@RELB!0.67!25.69!RELB;;chr18:19749386..19749404,+!p2@GATA6!0.67!5.60!GATA6;;chr9:16870659..16870675,-!p2@BNC2!0.67!4.61!BNC2;;chr4:38665883..38665922,+!p3@KLF3!0.66!15.15!KLF3;;chr1:158979872..158979898,+!p3@IFI16!0.66!12.51!IFI16;;chr10:63809090..63809097,+!p7@ARID5B!0.66!5.27!ARID5B;;chr19:13136130..13136165,+!p6@NFIX!0.66!4.94!NFIX;;chr3:71179785..71179810,-!p23@FOXP1!0.66!3.95!FOXP1;;chr6:1612248..1612281,+!p2@FOXC1!0.66!3.95!FOXC1;;chr7:15726243..15726293,-!p2@MEOX2!0.66!3.62!MEOX2;;chr10:114886551..114886601,+!p11@TCF7L2!0.66!3.62!TCF7L2;;chr12:53625846..53625861,-!p6@RARG!0.66!3.62!RARG;;chr14:37131058..37131139,+!p1@PAX9!0.66!3.62!PAX9;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!0.66!3.62!SMARCE1;;chr1:170633021..170633028,+!p27@PRRX1!0.66!3.62!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.66!3.62!ZFY;;chr6:19837592..19837621,+!p1@ID4!0.64!24.04!ID4;;chr5:321810..321877,+!p1@AHRR!0.64!12.18!AHRR;;chr15:66994663..66994680,+!p1@SMAD6!0.64!8.89!SMAD6;;chr2:28618532..28618610,+!p4@FOSL2!0.64!6.26!FOSL2;;chr6:1389789..1389821,+!p1@FOXF2!0.64!4.94!FOXF2;;chr14:61116168..61116180,-!p2@SIX1!0.64!3.95!SIX1;;chr3:178789522..178789564,-!p2@ZMAT3!0.63!27.99!ZMAT3;;chr9:102584262..102584276,+!p1@NR4A3!0.63!8.23!NR4A3;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.63!5.93!MEIS3P1;;chr19:13136241..13136258,+!p7@NFIX!0.63!4.61!NFIX;;chr14:95236440..95236465,-!p1@GSC!0.63!3.29!GSC;;chr7:27205106..27205134,-!p2@HOXA9!0.63!3.29!HOXA9;;chr7:27205136..27205164,-!p1@HOXA9!0.63!3.29!HOXA9;;chr8:77593750..77593757,+!p3@ZFHX4!0.63!3.29!ZFHX4;;chr10:63853479..63853496,+!p21@ARID5B!0.63!3.29!ARID5B;;chr12:54380404..54380433,+!p3@HOXC10!0.63!3.29!HOXC10;;chr19:56154958..56155027,+!p1@ZNF581!0.62!124.47!ZNF581;;chr22:38598086..38598105,+!p1@MAFF!0.62!39.84!MAFF;;chr6:144289132..144289134,-!p3@PLAGL1!0.62!8.23!PLAGL1;;chr18:3449720..3449749,+!p2@TGIF1!0.62!7.57!TGIF1;;chr16:54964740..54964789,+!p1@IRX5!0.62!4.94!IRX5;;chr3:21792585..21792625,-!p2@ZNF385D!0.62!3.62!ZNF385D;;chr3:71114066..71114114,-!p1@FOXP1!0.61!76.40!FOXP1;;chr17:1958388..1958404,+!p1@HIC1!0.61!23.38!HIC1;;chr11:65687362..65687436,+!p3@DRAP1!0.61!16.46!DRAP1;;chr3:71007886..71007887,-!p8@FOXP1!0.61!11.53!FOXP1;;chr15:67358163..67358192,+!p1@SMAD3!0.60!84.30!SMAD3;;chr4:4861385..4861398,+!p1@MSX1!0.60!10.21!MSX1;;chr2:45236579..45236596,-!p2@SIX2!0.60!2.96!SIX2;;chr6:85474198..85474212,-!p3@TBX18!0.60!2.96!TBX18;;chr16:67198633..67198671,+!p1@HSF4!0.60!2.96!HSF4;;chr10:63816978..63816993,+!p12@ARID5B!0.60!2.96!ARID5B;;chr12:54379029..54379057,+!p2@HOXC10!0.60!2.96!HOXC10;;chr12:54394309..54394336,+!p2@HOXC9!0.60!2.96!HOXC9;;chr11:65686732..656867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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000214;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000327;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000982;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914
+|ffid_belonging_in_development=CL:0000134,CL:0000222
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 37: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor3.CNhs12050.11440-118H9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor3.CNhs12050.11440-118H9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor3.CNhs12050.11440-118H9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor3.CNhs12050.11440-118H9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor3.CNhs12050.11440-118H9.hg38.nobarcode.ctss.bed.gz
 |id=FF:11440-118H9
 |is_a=EFO:0002091;;FF:0000187
 |is_obsolete=
+|library_id=CNhs12050
+|library_id_phase_based=2:CNhs12050
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11440
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.GGCTAC.11440
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11440
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.GGCTAC.11440
 |name=Synoviocyte, donor3
 |namespace=FANTOM5
@@ Line 45: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12050,LSID838,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10004,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=118
 |rna_catalog_number=CA408-R10a
@@ Line 59: / Line 82: @@
 |rna_tube_id=118H9
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10004.GGCTAC
 |sample_age=61
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 81: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11440-118H9;search_select_hide=table117:FF:11440-118H9
 }}

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FF:11440-118H9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:01, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0